mRNA_P-wetherbeei_contig19181.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19181.2.1
Unique NamemRNA_P-wetherbeei_contig19181.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19181.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19181contigP-wetherbeei_contig19181:324..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size447
Hectar predicted targeting categoryother localisation
Exons2
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.6505532-CDS-P-wetherbeei_contig19181:323..6451683186165.6505532-CDS-P-wetherbeei_contig19181:323..645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19181 324..645 +
1683186165.6583517-CDS-P-wetherbeei_contig19181:1058..11831683186165.6583517-CDS-P-wetherbeei_contig19181:1058..1183Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19181 1059..1183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19181.2.1prot_P-wetherbeei_contig19181.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19181 324..1183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19181.2.1

>prot_P-wetherbeei_contig19181.2.1 ID=prot_P-wetherbeei_contig19181.2.1|Name=mRNA_P-wetherbeei_contig19181.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
EKDNDATTVTLLAKGDYDGWMAQQAAPVQACEKRIRVLCDGRQSRRRAGR
RLDENPPYRVRMQRRCGNPESNVFYVFSLDRDGLILSVTPNTRVAAYQCF
QRSAAPTARAARWAQQPSAWRRTRGRRSRCAPSSTASRRENTSWRPQR*
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mRNA from alignment at P-wetherbeei_contig19181:324..1183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19181.2.1 ID=mRNA_P-wetherbeei_contig19181.2.1|Name=mRNA_P-wetherbeei_contig19181.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=860bp|location=Sequence derived from alignment at P-wetherbeei_contig19181:324..1183+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAAGACAACGACGCTACCACCGTGACGCTGCTCGCAAAGGGCGATTA
CGATGGCTGGATGGCGCAGCAAGCTGCACCCGTACAGGCATGCGAGAAAA
GGATTCGGGTGCTGTGTGATGGAAGACAGAGTCGACGAAGGGCAGGAAGG
AGGCTCGATGAGAACCCGCCGTATAGAGTAAGAATGCAACGTCGCTGTGG
TAACCCCGAGAGTAACGTGTTTTACGTCTTCTCCTTGGACAGGGATGGCT
TAATTCTATCGGTCACGCCAAACACAAGGGTGGCCGCCTATCAATGCTTC
CAGCGTTCAGCGGCACCGACAGGCAAGTGCAAACAAAATCTCTTGATATC
ATCCGCAGTTTTCAGATCTTTTCTTTTGGTGCTGCAGCTAGGGCAGAGCT
GTTTAAGAGCATTGCGCTTCCGTCTCTCACAAACAAGAATGCTTTTGAGT
GTGGGTATTGAGGAAAGTGTTGCTTCGATCTCTGCAGGCGCCAAAAACTG
TTAGCATGCGAAATTGCCGGCCTTTGGTCGCTGGCGGCGGCTCTGCCTGC
TCCTCGTTTTCGCGTCTGGCGGTGTTCTTAGCTCGTGTGACCATTATCTA
CGCACCCTCCAACTGCTGTTGTCTTGGCCTTAGCGTCAATTCGAAGTTGC
TGCAGCGGAATTCATAGTCTGATGCTCACGCGTCGCCCTTCATTCCCCAA
TCAAACCGTTGTGGTGCACCGCGGATACCTAGCAGCGCGGGCGGCGCGCT
GGGCGCAGCAGCCTTCTGCCTGGAGGAGGACGCGGGGTCGCCGTTCGCGT
TGTGCTCCCTCTTCGACAGCCTCCCGCCGGGAAAATACAAGCTGGCGTCC
GCAGAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19181:324..1183+

>mRNA_P-wetherbeei_contig19181.2.1 ID=mRNA_P-wetherbeei_contig19181.2.1|Name=mRNA_P-wetherbeei_contig19181.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig19181:324..1183+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAAGACAACGACGCTACCACCGTGACGCTGCTCGCAAAGGGCGATTA
CGATGGCTGGATGGCGCAGCAAGCTGCACCCGTACAGGCATGCGAGAAAA
GGATTCGGGTGCTGTGTGATGGAAGACAGAGTCGACGAAGGGCAGGAAGG
AGGCTCGATGAGAACCCGCCGTATAGAGTAAGAATGCAACGTCGCTGTGG
TAACCCCGAGAGTAACGTGTTTTACGTCTTCTCCTTGGACAGGGATGGCT
TAATTCTATCGGTCACGCCAAACACAAGGGTGGCCGCCTATCAATGCTTC
CAGCGTTCAGCGGCACCGACAGCGCGGGCGGCGCGCTGGGCGCAGCAGCC
TTCTGCCTGGAGGAGGACGCGGGGTCGCCGTTCGCGTTGTGCTCCCTCTT
CGACAGCCTCCCGCCGGGAAAATACAAGCTGGCGTCCGCAGAGGTGA
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