mRNA_P-wetherbeei_contig19157.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19157.1.1
Unique NamemRNA_P-wetherbeei_contig19157.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19157.1.1 vs. uniprot
Match: UPI001FB87F17 (LuxR family transcriptional regulator n=1 Tax=Rhizomicrobium electricum TaxID=480070 RepID=UPI001FB87F17)

HSP 1 Score: 52.4 bits (124), Expect = 1.690e-5
Identity = 30/119 (25.21%), Postives = 50/119 (42.02%), Query Frame = 1 
Query:   22 FRFAETAQRAETLDQIDDALLKILSRFGIGHFVLYQATDRGRRPTGARIAGPMHREWRKHYVENGMANYDELLSYGLGTVAPTTWTKFKAETAMSDGQKLLFDEAGSFGLQDGFYLPIH 378
            F + +  QR +    +  A    ++  G+  F L +            I   M   W++ Y E   A  D  +     +V P  W++  A +     Q+ ++DEAGSFGL  G  +PI+
Sbjct:    6 FEYIDRLQRLDEPQAVRAAFADAITALGVTSFALLEVNPNPEAFQRTVIDDTMPVGWKERYFEQKYAAIDPCVRAIASSVEPFLWSEALARSRREKPQRRIYDEAGSFGLNQGLCVPIY 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19157.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FB87F171.690e-525.21LuxR family transcriptional regulator n=1 Tax=Rhiz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19157contigP-wetherbeei_contig19157:925..1302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog990285.RGCCGE502_16805
PFAMsAutoind_bind,GerE
Model size378
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.48e-09
EggNOG OGsCOG2771@1|root,COG2771@2|Bacteria,1N6UR@1224|Proteobacteria,2V8KR@28211|Alphaproteobacteria,4BE51@82115|Rhizobiaceae
DescriptionCOG2771 DNA-binding HTH domain-containing proteins
Cds size378
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186165.1122246-CDS-P-wetherbeei_contig19157:924..13021683186165.1122246-CDS-P-wetherbeei_contig19157:924..1302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19157 925..1302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19157.1.1prot_P-wetherbeei_contig19157.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19157 925..1302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19157.1.1

>prot_P-wetherbeei_contig19157.1.1 ID=prot_P-wetherbeei_contig19157.1.1|Name=mRNA_P-wetherbeei_contig19157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
AIVAEPVFRFAETAQRAETLDQIDDALLKILSRFGIGHFVLYQATDRGRR
PTGARIAGPMHREWRKHYVENGMANYDELLSYGLGTVAPTTWTKFKAETA
MSDGQKLLFDEAGSFGLQDGFYLPIH
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mRNA from alignment at P-wetherbeei_contig19157:925..1302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19157.1.1 ID=mRNA_P-wetherbeei_contig19157.1.1|Name=mRNA_P-wetherbeei_contig19157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig19157:925..1302+ (Phaeothamnion wetherbeei SAG_119_79)
GCCATCGTCGCCGAGCCTGTGTTTCGCTTTGCCGAGACGGCGCAGCGGGC
GGAGACGCTGGACCAGATCGACGACGCGCTGCTGAAAATCCTGTCGCGGT
TCGGCATCGGCCACTTCGTCCTCTACCAGGCGACGGACCGCGGCCGCAGG
CCGACGGGCGCACGCATCGCCGGCCCGATGCATCGCGAATGGCGCAAGCA
CTATGTCGAGAACGGCATGGCGAACTATGATGAGCTGCTGAGCTATGGGC
TCGGCACTGTCGCGCCGACGACGTGGACGAAATTCAAGGCCGAGACAGCG
ATGTCGGACGGACAGAAGCTGCTGTTCGACGAGGCTGGCTCCTTCGGACT
GCAGGATGGCTTCTACCTTCCGATCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19157:925..1302+

>mRNA_P-wetherbeei_contig19157.1.1 ID=mRNA_P-wetherbeei_contig19157.1.1|Name=mRNA_P-wetherbeei_contig19157.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig19157:925..1302+ (Phaeothamnion wetherbeei SAG_119_79)
GCCATCGTCGCCGAGCCTGTGTTTCGCTTTGCCGAGACGGCGCAGCGGGC
GGAGACGCTGGACCAGATCGACGACGCGCTGCTGAAAATCCTGTCGCGGT
TCGGCATCGGCCACTTCGTCCTCTACCAGGCGACGGACCGCGGCCGCAGG
CCGACGGGCGCACGCATCGCCGGCCCGATGCATCGCGAATGGCGCAAGCA
CTATGTCGAGAACGGCATGGCGAACTATGATGAGCTGCTGAGCTATGGGC
TCGGCACTGTCGCGCCGACGACGTGGACGAAATTCAAGGCCGAGACAGCG
ATGTCGGACGGACAGAAGCTGCTGTTCGACGAGGCTGGCTCCTTCGGACT
GCAGGATGGCTTCTACCTTCCGATCCAC
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