mRNA_P-wetherbeei_contig1915.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1915.1.1
Unique NamemRNA_P-wetherbeei_contig1915.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A482SGX8_9ARCH (NAGPA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGX8_9ARCH)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-17
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIMCVR 219
            L ++DG+EDI  G  L E+A++   +G  SAVN+DGGGSSV+V A G V+ +PTC DT  +CERAVANI CVR
Sbjct:    3 LLEIDGEEDINYGPDLFEIAEIWVSVGALSAVNIDGGGSSVSV-AEGKVVSQPTCNDTPEICERAVANIACVR 74          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A6B2LEU8_9EUKA (NAGPA domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LEU8_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-16
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIMCVR 219
            L QVDG+EDI +G  L ELA++   +G+ SAVNLDGGGSSV+V  G VV   PTC DT  +CERAVA+I CV+
Sbjct:  172 LLQVDGEEDIKAGPDLFELAELFVSVGIHSAVNLDGGGSSVSVFEGKVV-NSPTCHDTPQICERAVASITCVK 243          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A7S3GR75_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR75_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.020e-15
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIMCVR 219
            L +VDG+EDI +G  L E+A++   +GV+SAVN+DGGGSSV+V  G ++   PTC DT  VCERAVANI CV+
Sbjct:  222 LLEVDGEEDINAGPDLWEMAELFVSLGVQSAVNIDGGGSSVSVYKGEII-DVPTCNDTPEVCERAVANIACVK 293          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A5A8CTG8_CAFRO (NAGPA domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTG8_CAFRO)

HSP 1 Score: 70.9 bits (172), Expect = 7.620e-13
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   10 VDGQEDIASGLSLSELADVLAG-MGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTAT-VCERAVANIMCVR 219
            VDG E I +GL L E A+VLA  +GV+ AVN+DGGGSSVAV   G +  +PTC+DT + +CERA+  IMC R
Sbjct:  225 VDGAETIRAGLDLFEFAEVLAAQVGVQHAVNIDGGGSSVAV-VNGKIASKPTCVDTPSPICERAMPTIMCAR 295          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A7S2S3U9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3U9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.000e-12
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIMCVR 219
            L  VDG E  + G++++ELA   A +G + AVNLDGGGS+VA    G V+  PTC D+   CERAVA+I+CV+
Sbjct:   61 LLTVDGIEGGSRGMNMTELAAAFAELGAQQAVNLDGGGSTVAW-YDGEVIDHPTCTDSLVKCERAVASIICVK 132          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A7S0Q146_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q146_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 2.140e-10
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAV----GAGGVVLGRPTCLDTATVCERAVANIMCV 216
            L  VDG ED   G++++ELA     +G   A+NLDGGGS+ A     G    ++ +PTC D  T+CERAVA ++CV
Sbjct:  185 LLTVDGAEDEKLGMNITELAAAFQRLGAHHALNLDGGGSTAAWWKGHGTADGIIDKPTCNDNTTICERAVATVLCV 260          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: X6MSI3_RETFI (NAGPA domain-containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MSI3_RETFI)

HSP 1 Score: 60.8 bits (146), Expect = 4.330e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCER 192
            L QVDG+EDI SGL L E  ++   + V+SAVN+DGGGSS +V     V+ +PTC D + +C+R
Sbjct:  149 LLQVDGEEDIKSGLDLFEFTELFTYLKVDSAVNIDGGGSSTSV-YNDEVINKPTCSDNSDICQR 211          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A1W1YDH1_9FIRM (Exopolysaccharide biosynthesis protein n=1 Tax=Papillibacter cinnamivorans DSM 12816 TaxID=1122930 RepID=A0A1W1YDH1_9FIRM)

HSP 1 Score: 51.6 bits (122), Expect = 7.450e-6
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   13 DGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIM 210
            DG+   + GL+L ELA  L G+GV++A NLDGGGSS  V  G V+   PT  D  T+ ER+V++I+
Sbjct:  248 DGRTSESEGLTLYELASFLQGLGVQTAYNLDGGGSSTMVFCGSVI-NNPTT-DGKTIRERSVSDIV 311          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: A0A4S2TFM7_9ACTN (Phosphodiester glycosidase family protein n=1 Tax=Streptomyces sp. A1136 TaxID=2563102 RepID=A0A4S2TFM7_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 7.800e-6
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 LQQVDGQED-IASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIM 210
            L  VDG+E  +++G +LSE AD++A +G E+AV LDGGGS+  V  GG +  RP       V ER VAN +
Sbjct:  346 LVTVDGRESRVSAGATLSEAADLMASLGAENAVGLDGGGSTTMV-VGGKLRNRPRETAGQPVTERPVANAL 415          
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Match: UPI0019AEB9CE (Uncharacterized protein n=2 Tax=Streptomyces cirratus TaxID=68187 RepID=UPI0019AEB9CE)

HSP 1 Score: 51.6 bits (122), Expect = 7.800e-6
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    1 LQQVDGQED-IASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVLGRPTCLDTATVCERAVANIM 210
            L  +DG+E  +++G +L E AD++A +G E+AV LDGGGS+  V  GG +  RP   +   V ER VAN +
Sbjct:  349 LVTIDGRESGVSAGATLGEAADLMASLGAENAVGLDGGGSTTVV-VGGKLRNRPRETEGQPVTERPVANAL 418          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1915.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A482SGX8_9ARCH1.250e-1757.53NAGPA domain-containing protein n=1 Tax=archaeon T... [more]
A0A6B2LEU8_9EUKA1.380e-1660.27NAGPA domain-containing protein n=1 Tax=Arcella in... [more]
A0A7S3GR75_9STRA1.020e-1557.53Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5A8CTG8_CAFRO7.620e-1356.94NAGPA domain-containing protein n=4 Tax=Cafeteria ... [more]
A0A7S2S3U9_9STRA8.000e-1250.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0Q146_9EUKA2.140e-1044.74Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
X6MSI3_RETFI4.330e-950.00NAGPA domain-containing protein (Fragment) n=1 Tax... [more]
A0A1W1YDH1_9FIRM7.450e-648.48Exopolysaccharide biosynthesis protein n=1 Tax=Pap... [more]
A0A4S2TFM7_9ACTN7.800e-646.48Phosphodiester glycosidase family protein n=1 Tax=... [more]
UPI0019AEB9CE7.800e-643.66Uncharacterized protein n=2 Tax=Streptomyces cirra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1915contigP-wetherbeei_contig1915:49..270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15725180
PFAMsNAGPA
Model size222
Max annot lvl33154|Opisthokonta
KEGG koko:K01125
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-14
EggNOG OGs2CF2M@1|root,2S3HR@2759|Eukaryota,3A56R@33154|Opisthokonta
EC3.1.4.45
DescriptionPfam:DUF2233
Cds size222
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186164.9107993-CDS-P-wetherbeei_contig1915:48..2701683186164.9107993-CDS-P-wetherbeei_contig1915:48..270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1915 49..270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1915.1.1prot_P-wetherbeei_contig1915.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1915 49..270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1915.1.1

>prot_P-wetherbeei_contig1915.1.1 ID=prot_P-wetherbeei_contig1915.1.1|Name=mRNA_P-wetherbeei_contig1915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
LQQVDGQEDIASGLSLSELADVLAGMGVESAVNLDGGGSSVAVGAGGVVL
GRPTCLDTATVCERAVANIMCVR*
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mRNA from alignment at P-wetherbeei_contig1915:49..270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1915.1.1 ID=mRNA_P-wetherbeei_contig1915.1.1|Name=mRNA_P-wetherbeei_contig1915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig1915:49..270+ (Phaeothamnion wetherbeei SAG_119_79)
CTACAACAGGTGGACGGCCAAGAAGACATTGCCAGCGGCCTGAGCCTCTC GGAGCTAGCCGACGTTTTGGCTGGCATGGGAGTTGAGTCGGCCGTCAATC TGGACGGCGGCGGAAGCAGCGTCGCCGTCGGGGCGGGCGGGGTCGTGTTG GGGCGGCCGACGTGCCTCGACACTGCTACGGTGTGCGAGCGGGCCGTCGC CAACATTATGTGTGTTCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1915:49..270+

>mRNA_P-wetherbeei_contig1915.1.1 ID=mRNA_P-wetherbeei_contig1915.1.1|Name=mRNA_P-wetherbeei_contig1915.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig1915:49..270+ (Phaeothamnion wetherbeei SAG_119_79)
CTACAACAGGTGGACGGCCAAGAAGACATTGCCAGCGGCCTGAGCCTCTC
GGAGCTAGCCGACGTTTTGGCTGGCATGGGAGTTGAGTCGGCCGTCAATC
TGGACGGCGGCGGAAGCAGCGTCGCCGTCGGGGCGGGCGGGGTCGTGTTG
GGGCGGCCGACGTGCCTCGACACTGCTACGGTGTGCGAGCGGGCCGTCGC
CAACATTATGTGTGTTCGTTGA
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