mRNA_P-wetherbeei_contig19122.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19122.1.1
Unique NamemRNA_P-wetherbeei_contig19122.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19122.1.1 vs. uniprot
Match: D8LS59_ECTSI (Dynein intermediate chain family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS59_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.110e-26
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 VPIGLSETPTEMLLCLRSSVVATDFRDYDKFQREKAEYERRCAERAGSERSVEQHAQTTNWALKNKEVMAATPATKDMSCAVNTWEIFD 267
            + IGL ETPT MLL +R S VATD RD+ ++Q+EK +YE+R  E+ GS+R   +HAQT NWALK KEV AA  ATKD SCA  TWEIFD
Sbjct:  167 ITIGLCETPTMMLLEIRGSAVATDLRDFGRYQQEKQDYEKRVQEKIGSDRFASRHAQTVNWALKTKEVTAAAAATKDASCAATTWEIFD 255
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BLAST of mRNA_P-wetherbeei_contig19122.1.1 vs. uniprot
Match: A0A835YZL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.750e-22
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:    1 VPIGLSETPTEMLLCLRSSVVATDFRDYDKFQREKAEYERRCAERAGSERSVEQHAQTTNWALKNKEVMAATPATKDMSCAVNTWEIFD 267
            V + L ETPT MLL +R S VATDFRDYDK+QREK EY+RR A + GSE + E+H QT NW  K+KE MA    TKD + +V  WEI+D
Sbjct:  245 VTLLLQETPTIMLLEIRGSAVATDFRDYDKYQREKQEYDRRVAAKQGSETAQERHTQTLNWPPKHKEAMAVPAPTKDAAASVLPWEIYD 333
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BLAST of mRNA_P-wetherbeei_contig19122.1.1 vs. uniprot
Match: A0A7S2BXC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BXC5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.940e-9
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  112 YERRCAERAGSERSVEQHAQTTNWALKNKEVMAATPATKDMSCAVNTWEIFD 267
            Y+  CAER  S++ V++HAQT N  LK+K+V+AA P T+D+ C+  TW I+D
Sbjct:    6 YKALCAERESSDKYVDRHAQTINLQLKDKQVLAAPPPTRDVGCSAETWSIYD 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19122.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS59_ECTSI2.110e-2661.80Dynein intermediate chain family n=1 Tax=Ectocarpu... [more]
A0A835YZL2_9STRA1.750e-2258.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BXC5_9STRA3.940e-950.00Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19122contigP-wetherbeei_contig19122:440..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LS59
Preferred nameWDR78
PFAMsWD40
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K22001
KEGG Pathwayko04926,map04926
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0007276,GO:0007283,GO:0008150,GO:0009987,GO:0015630,GO:0019953,GO:0022414,GO:0030286,GO:0032501,GO:0032504,GO:0032838,GO:0032991,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0045503,GO:0045504,GO:0048232,GO:0048609,GO:0051704,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
Exons1
Evalue3.47e-27
EggNOG OGsKOG1587@1|root,KOG1587@2759|Eukaryota
Ec32 ortholog descriptiondynein intermediate chain family
Ec32 orthologEc-12_004730.1
Descriptiondynein heavy chain binding
Cds size267
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186164.580645-CDS-P-wetherbeei_contig19122:439..7061683186164.580645-CDS-P-wetherbeei_contig19122:439..706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19122 440..706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19122.1.1prot_P-wetherbeei_contig19122.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19122 440..706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19122.1.1

>prot_P-wetherbeei_contig19122.1.1 ID=prot_P-wetherbeei_contig19122.1.1|Name=mRNA_P-wetherbeei_contig19122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
VPIGLSETPTEMLLCLRSSVVATDFRDYDKFQREKAEYERRCAERAGSER
SVEQHAQTTNWALKNKEVMAATPATKDMSCAVNTWEIFD
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mRNA from alignment at P-wetherbeei_contig19122:440..706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19122.1.1 ID=mRNA_P-wetherbeei_contig19122.1.1|Name=mRNA_P-wetherbeei_contig19122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig19122:440..706+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCATCGGTCTCAGCGAGACCCCGACCGAGATGCTCCTCTGCCTGCG
CAGCTCCGTCGTGGCCACCGACTTTCGTGACTATGACAAGTTCCAGCGAG
AAAAGGCCGAGTACGAAAGGCGCTGCGCCGAGCGGGCCGGGAGCGAGCGG
TCCGTAGAGCAGCACGCGCAGACGACAAATTGGGCACTCAAGAACAAGGA
GGTCATGGCGGCGACGCCGGCGACCAAGGACATGAGCTGCGCTGTCAACA
CGTGGGAGATCTTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19122:440..706+

>mRNA_P-wetherbeei_contig19122.1.1 ID=mRNA_P-wetherbeei_contig19122.1.1|Name=mRNA_P-wetherbeei_contig19122.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig19122:440..706+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCCCATCGGTCTCAGCGAGACCCCGACCGAGATGCTCCTCTGCCTGCG
CAGCTCCGTCGTGGCCACCGACTTTCGTGACTATGACAAGTTCCAGCGAG
AAAAGGCCGAGTACGAAAGGCGCTGCGCCGAGCGGGCCGGGAGCGAGCGG
TCCGTAGAGCAGCACGCGCAGACGACAAATTGGGCACTCAAGAACAAGGA
GGTCATGGCGGCGACGCCGGCGACCAAGGACATGAGCTGCGCTGTCAACA
CGTGGGAGATCTTCGAC
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