mRNA_P-wetherbeei_contig19120.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19120.1.1
Unique NamemRNA_P-wetherbeei_contig19120.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19120.1.1 vs. uniprot
Match: A0A812WCG2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WCG2_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 4.520e-12
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:    1 DGSLPSRDRSQYTSSTWWSAPERVLLRPEDDAFREACGASVRACRIRAAVYGFVETEYSITAGTAAAAVTLLGGRPVAAVVAEGKYEYFDITQRDPGEVSIAVTPSSGDVRLFVGCGPSFAFPNA 375
            D  +P+RD +QY S++  +  E VL++  DDA++ +C    R C +  AVYG+  ++Y+ITA  +    TL    P    V  G YEYF  T  +   V  ++TP SGD  LFV    S   P A
Sbjct:  420 DDKVPNRDNAQYRSNSV-AGEEVVLIKKTDDAYKNSCAGKDR-CHVYIAVYGYDNSQYTITAAKSDGITTLRENVPARENVDAGHYEYFKFTSTEHLNVLFSLTPLSGDPDLFVSTTVSHLAPRA 542
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19120.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812WCG2_9DINO4.520e-1236.80Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19120contigP-wetherbeei_contig19120:24..1109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size801
Hectar predicted targeting categoryother localisation
Exons2
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186164.5433176-CDS-P-wetherbeei_contig19120:23..6531683186164.5433176-CDS-P-wetherbeei_contig19120:23..653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19120 24..653 -
1683186164.5533953-CDS-P-wetherbeei_contig19120:938..11091683186164.5533953-CDS-P-wetherbeei_contig19120:938..1109Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19120 939..1109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19120.1.1prot_P-wetherbeei_contig19120.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19120 24..1109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19120.1.1

>prot_P-wetherbeei_contig19120.1.1 ID=prot_P-wetherbeei_contig19120.1.1|Name=mRNA_P-wetherbeei_contig19120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
DGSLPSRDRSQYTSSTWWSAPERVLLRPEDDAFREACGASVRACRIRAAV
YGFVETEYSITAGTAAAAVTLLGGRPVAAVVAEGKYEYFDITQRDPGEVS
IAVTPSSGDVRLFVGCGPSFAFPNATHHTWRLHANDGGDGGGGDSGGGGD
GGGDGGGMLVLSTGARDTCTPPTTYHASVYGLTLATFTIVAGVSGAGWSG
GGGNSTGPGDVVVLLPGLSQTGTAGYGEFRYFEVRRRAGDGPVRVRAAAT
GGGAVGLYVSASWETRP
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mRNA from alignment at P-wetherbeei_contig19120:24..1109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19120.1.1 ID=mRNA_P-wetherbeei_contig19120.1.1|Name=mRNA_P-wetherbeei_contig19120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-wetherbeei_contig19120:24..1109- (Phaeothamnion wetherbeei SAG_119_79)
GACGGGTCGCTTCCGTCGCGAGACCGCAGCCAGTACACGAGCTCGACGTG
GTGGTCTGCGCCGGAGCGGGTGTTGCTCCGCCCGGAGGACGACGCCTTTC
GGGAGGCCTGCGGGGCGTCGGTGCGGGCCTGCCGGATCCGTGCGGCCGTC
TATGGCTTTGTTGAGACAGAGGTTAGATATTTTGAGAGAGGATAGGATGG
CGGCGATGGAAACGGCAGCAGCGGCAGCGGTGGCGGCGTCAGCGACAGCG
GCATTATGAACGCGGACGAGGTGTTGCTTCTGTGTCAGCTGCTGTTCGGG
GATGGCTGTGAAGGATGCTTTTGCGGCGAAGGAGTTTACTTTCTTGGATT
TGTTTCCCTGTTTAAGTAACGCTGAAAGAATCTGGTAACCTGACTATTTG
CTTGGTTGTTGCCTCTGTGCCTCGCGTCGTTCGTCCACTTCACTACCCGG
CAACAGTACTCGATCACGGCGGGCACTGCGGCCGCCGCCGTGACGCTGTT
GGGCGGCCGCCCAGTCGCGGCGGTCGTGGCGGAAGGCAAGTACGAATACT
TTGACATCACCCAGCGGGACCCCGGCGAAGTCAGCATCGCCGTCACGCCA
TCGTCGGGCGACGTGCGGCTCTTCGTCGGCTGCGGCCCGTCCTTCGCCTT
CCCCAACGCCACCCATCACACGTGGCGGCTGCACGCTAACGACGGCGGCG
ACGGCGGCGGGGGGGACAGCGGCGGCGGCGGGGATGGCGGCGGCGACGGC
GGCGGTATGCTGGTGCTATCGACAGGGGCCCGCGACACGTGCACGCCGCC
GACGACGTACCACGCCTCCGTCTACGGGCTGACACTGGCGACTTTCACAA
TCGTTGCCGGCGTCTCCGGGGCCGGCTGGAGCGGCGGCGGCGGCAACTCC
ACCGGCCCCGGGGACGTAGTAGTCTTGCTACCGGGCCTGTCTCAGACGGG
GACGGCAGGGTACGGCGAGTTCCGTTACTTTGAGGTCCGGCGGAGGGCTG
GCGATGGTCCTGTGCGGGTCCGGGCAGCCGCGACAGGCGGCGGCGCCGTC
GGGCTCTACGTGTCTGCATCATGGGAGACGCGGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19120:24..1109-

>mRNA_P-wetherbeei_contig19120.1.1 ID=mRNA_P-wetherbeei_contig19120.1.1|Name=mRNA_P-wetherbeei_contig19120.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig19120:24..1109- (Phaeothamnion wetherbeei SAG_119_79)
GACGGGTCGCTTCCGTCGCGAGACCGCAGCCAGTACACGAGCTCGACGTG
GTGGTCTGCGCCGGAGCGGGTGTTGCTCCGCCCGGAGGACGACGCCTTTC
GGGAGGCCTGCGGGGCGTCGGTGCGGGCCTGCCGGATCCGTGCGGCCGTC
TATGGCTTTGTTGAGACAGAGTACTCGATCACGGCGGGCACTGCGGCCGC
CGCCGTGACGCTGTTGGGCGGCCGCCCAGTCGCGGCGGTCGTGGCGGAAG
GCAAGTACGAATACTTTGACATCACCCAGCGGGACCCCGGCGAAGTCAGC
ATCGCCGTCACGCCATCGTCGGGCGACGTGCGGCTCTTCGTCGGCTGCGG
CCCGTCCTTCGCCTTCCCCAACGCCACCCATCACACGTGGCGGCTGCACG
CTAACGACGGCGGCGACGGCGGCGGGGGGGACAGCGGCGGCGGCGGGGAT
GGCGGCGGCGACGGCGGCGGTATGCTGGTGCTATCGACAGGGGCCCGCGA
CACGTGCACGCCGCCGACGACGTACCACGCCTCCGTCTACGGGCTGACAC
TGGCGACTTTCACAATCGTTGCCGGCGTCTCCGGGGCCGGCTGGAGCGGC
GGCGGCGGCAACTCCACCGGCCCCGGGGACGTAGTAGTCTTGCTACCGGG
CCTGTCTCAGACGGGGACGGCAGGGTACGGCGAGTTCCGTTACTTTGAGG
TCCGGCGGAGGGCTGGCGATGGTCCTGTGCGGGTCCGGGCAGCCGCGACA
GGCGGCGGCGCCGTCGGGCTCTACGTGTCTGCATCATGGGAGACGCGGCC
G
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