mRNA_P-wetherbeei_contig19119.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19119.1.1
Unique NamemRNA_P-wetherbeei_contig19119.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A4U6BNP5_9BRAD (DNA ligase (ATP) n=11 Tax=Proteobacteria TaxID=1224 RepID=A0A4U6BNP5_9BRAD)

HSP 1 Score: 668 bits (1724), Expect = 5.400e-233
Identity = 328/407 (80.59%), Postives = 362/407 (88.94%), Query Frame = 1
Query:    1 TIRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTS-KPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLAK 1218
            T+++I PEL+  AAAKNPFGGENAPKKT++VHWLKP+LVAEIEFAGWTGDNMVRQAAFKGLRKDK  S+VT DKP +T +A      ++  KT+ K  +TR  S++S  +T++ V IS P+KA+WPDGGDGEPVTKLDLAHYMEQVGDWLI HIKGRPCSIIRAPDGIGGETFFQRH M GMS L+ LVKVSGDRKPYVQIDRVEGLVA AQIGGLE HPWNCAP+EPDVPGRLVFDLDP+PD+ FSAVVDAARE+RERLT +GLESFCKTTGGKGLHVVTPLKDAKKDK+DWK AK FAQAVCQ+MA  SPEHYLLNMSKKQR GKIFLDYLRNDR STAVAPLSPRARDGAPVSMP+TWAQVRSDLDPMK+TLRTVP LL ++KAW DYD AARSIKAA+AKLAK
Sbjct:  490 TVKRIMPELRATAAAKNPFGGENAPKKTADVHWLKPELVAEIEFAGWTGDNMVRQAAFKGLRKDKPASDVTADKPARTHVA------ALSPKTNGKAPATRIVSSRSNDNTIMDVTISNPDKAMWPDGGDGEPVTKLDLAHYMEQVGDWLIAHIKGRPCSIIRAPDGIGGETFFQRHAMAGMSKLLDLVKVSGDRKPYVQIDRVEGLVAVAQIGGLELHPWNCAPDEPDVPGRLVFDLDPSPDVAFSAVVDAAREMRERLTDLGLESFCKTTGGKGLHVVTPLKDAKKDKIDWKTAKTFAQAVCQQMAADSPEHYLLNMSKKQREGKIFLDYLRNDRMSTAVAPLSPRARDGAPVSMPMTWAQVRSDLDPMKYTLRTVPALLAKTKAWADYDSAARSIKAAIAKLAK 890          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: UPI001F443739 (DNA ligase D n=1 Tax=Bradyrhizobium sp. G127 TaxID=2904800 RepID=UPI001F443739)

HSP 1 Score: 665 bits (1715), Expect = 1.930e-231
Identity = 324/405 (80.00%), Postives = 363/405 (89.63%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLAK 1218
            +++I PELK NAA K+PFGG+N P++TSE+HWLKP+LVAEIEFAG+TG+ MVRQAAFKGLRKDK  SEV  DKPVK +IA+P AK S  +KTSK  + + +S KSG+STV+GV ISKP+K LWPDGGDGEPVTKLDLA YMEQVGDWLI HIKGRPCSIIRAPDGI GE FFQRH M GMSNLI LVKVSGDRKPYVQIDRVEGL+AAAQIGGLE HPWNCAP EPDVPGRLVFDLDP+PD+ F+AVVDAARE+RERLTA+GLESFCKTTGGKGLH+VTPLKDAKKDK++WKAAKAFAQ VCQ+M   SPEHYLLNMSKKQR GKIFLDYLRNDR +TAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVP L+ ++KAW DY+ +ARS+K+A+AKL K
Sbjct:  501 VKRIMPELKANAATKSPFGGQNVPRQTSEMHWLKPELVAEIEFAGFTGEGMVRQAAFKGLRKDKPASEVIADKPVKIKIAEPSAKSS-RQKTSKAAAAKSSSIKSGSSTVMGVVISKPDKTLWPDGGDGEPVTKLDLAQYMEQVGDWLITHIKGRPCSIIRAPDGINGEKFFQRHAMAGMSNLIDLVKVSGDRKPYVQIDRVEGLIAAAQIGGLELHPWNCAPGEPDVPGRLVFDLDPSPDVAFTAVVDAAREMRERLTALGLESFCKTTGGKGLHIVTPLKDAKKDKINWKAAKAFAQEVCQQMTTDSPEHYLLNMSKKQRKGKIFLDYLRNDRMATAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPGLIGKAKAWADYEKSARSLKSAIAKLTK 904          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: F7QJS4_9BRAD (DNA ligase (ATP) n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=F7QJS4_9BRAD)

HSP 1 Score: 648 bits (1672), Expect = 3.700e-225
Identity = 319/405 (78.77%), Postives = 351/405 (86.67%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLAK 1218
            ++++ PELK +AAAKNPFGGENAPKKT EVHWLKP LVAEIEFAGWTGDNMVRQAAFKGLRKDK  SEVT DKP  T +A   AK S  + T  P +T         +TV+GV IS P+KA+WPDGGDGEPVTKLDLAHYMEQ GDWLI HIKGRPCSI+RAPDGIGGETFFQRH M GMS LI +VKVSGDRKPYVQIDRV+GLVA AQIGGLE HPWNCAP EPDVPGRLVFDLDP+PD+ FSAVVDAARE+RERL  +GLESFCKTTGGKGLHVVTPLKDAKKD++DWK AKAFAQAVCQ+MA  SPEHYLLNMSKKQR GKIFLDYLRND+TSTAVAPLSPRARDGA VSMP+TW QVRSDLDP ++T+RTVP+LL R+KAW DYD AARSI+AA+ K+AK
Sbjct:  492 VKRLMPELKSHAAAKNPFGGENAPKKTPEVHWLKPDLVAEIEFAGWTGDNMVRQAAFKGLRKDKPASEVTPDKPSSTHVANLSAKASA-KATKTPRTTAN-------NTVMGVTISHPDKAMWPDGGDGEPVTKLDLAHYMEQAGDWLIAHIKGRPCSILRAPDGIGGETFFQRHAMPGMSKLIDVVKVSGDRKPYVQIDRVDGLVAVAQIGGLELHPWNCAPGEPDVPGRLVFDLDPSPDVAFSAVVDAAREMRERLADLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKTAKAFAQAVCQQMAADSPEHYLLNMSKKQREGKIFLDYLRNDKTSTAVAPLSPRARDGATVSMPLTWTQVRSDLDPKRYTVRTVPSLLARTKAWSDYDAAARSIRAAIGKIAK 888          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A8I1RR00_9BRAD (DNA ligase (ATP) n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A8I1RR00_9BRAD)

HSP 1 Score: 644 bits (1661), Expect = 3.280e-223
Identity = 316/405 (78.02%), Postives = 359/405 (88.64%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLAK 1218
            +++I PELK  AA+ +PFGG+N PKKTS++HW+KP+LVAEIEFAG+TGD MVRQAAFKGLRKDK  SEVT D+PVKT+IA+P AK S   K +K  + + ++T SG +TV+GV ISKP+KA+WPDGGDG+PVTKLDLA YME+VGDWLIEHIKGRPCSIIRAPDGI GE FFQRH M GMSNLIGLV+VSGDRKPYVQIDRVEGL AAAQIGGLE HPWNCAP+EPDVPGRLVFDLDP+PD+ FSAVVDAARE+R+RLTA+GLESFCKTTGGKGLHVV+PLKDAKKD++DWK AKAFAQ VCQ+MA  SPE YLLNMSKKQR GKIFLDYLRNDR +TAVAPLSPRAR GA VSMP+TW QVRSDLDP K+TLRT P L+ +SKAW DYD AARSIK+A+AKLAK
Sbjct:  507 VKRIMPELKTVAASDSPFGGKNVPKKTSDMHWVKPELVAEIEFAGFTGDGMVRQAAFKGLRKDKPASEVTTDEPVKTEIAEPSAKSSGKPK-AKTAAAKSSAT-SGTATVMGVVISKPDKAMWPDGGDGKPVTKLDLAQYMEEVGDWLIEHIKGRPCSIIRAPDGIDGEKFFQRHAMTGMSNLIGLVRVSGDRKPYVQIDRVEGLAAAAQIGGLELHPWNCAPDEPDVPGRLVFDLDPSPDVAFSAVVDAAREMRDRLTALGLESFCKTTGGKGLHVVSPLKDAKKDRIDWKTAKAFAQGVCQQMAADSPELYLLNMSKKQRQGKIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVRSDLDPKKYTLRTTPALIAKSKAWADYDSAARSIKSAIAKLAK 909          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A5C8CQJ5_9BRAD (DNA ligase (ATP) n=1 Tax=Afipia sp. TaxID=1871052 RepID=A0A5C8CQJ5_9BRAD)

HSP 1 Score: 640 bits (1650), Expect = 1.510e-221
Identity = 313/404 (77.48%), Postives = 356/404 (88.12%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLA 1215
            ++++ PELK  AA+++PFGG NAP+KT+++HWLKP+LV+EIEFAG+TGD MVRQAAFKGLRKDK  S+V  D+PVKT IA+P  K SV R  ++  + + A+T SG +TV+G+ ISKP KA+WPDGGDGEPVTKLDLAHYMEQVGDWLIEHI+GRPCSIIRAPDGIGGETFFQRH M GMSNLI +VKVSGDRKPYVQIDR+EGL+A AQIGGLE HPWNCAP+EPDVPGRLVFDLDP+PD+ F+AV+DAARE+RERLTA+GLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQ VCQ+MA  SPE YLLNMSKKQR GKIFLDYLRNDR +TAVAPLSPRAR GA VSMP+TWAQVRSDLDP KFTLRT P L+ +SKAW DY  AARSIK A+ K A
Sbjct:  507 VKRLMPELKAMAASESPFGGTNAPRKTADIHWLKPELVSEIEFAGFTGDGMVRQAAFKGLRKDKPASDVMADEPVKTGIAKPSVKSSV-RLRARAAAAKPAAT-SGTATVMGIVISKPGKAMWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIRGRPCSIIRAPDGIGGETFFQRHAMPGMSNLIDVVKVSGDRKPYVQIDRIEGLIAVAQIGGLELHPWNCAPDEPDVPGRLVFDLDPSPDVAFTAVIDAAREMRERLTALGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQGVCQQMAADSPELYLLNMSKKQRQGKIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVRSDLDPKKFTLRTTPALIAKSKAWADYGRAARSIKTAIGKFA 908          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A1Q3W0Z2_9BRAD (DNA ligase (ATP) n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3W0Z2_9BRAD)

HSP 1 Score: 617 bits (1591), Expect = 6.810e-213
Identity = 299/404 (74.01%), Postives = 341/404 (84.41%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTRGASTKSG-ASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKL 1212
            ++QI P LK  AA +NPFGG+NAPKKT+ VHWLKP+LVAEIEFAGWTGD+MVRQA+FKGLRKDK+P EV VD+P    +A+P ++    +  +K  +   AS  SG  + V+GV ISKP+KALWPDGGDGEPVTKLDLAHY E VG+W+I+HIKGRPCSI+RAPDGI GETFFQRH   GMSNL   V VSGDRKPYVQIDR+EGL+AAAQIGGLE HPWNCA +EP+VPGR VFDLDPAPD+ F AVVD ARE+RERL AVGLESFCKTTGGKG+HVV PLKDAKKD++DWK AKAFAQA+CQ+MA  +PE YLLNMSKKQR GKIFLDYLRNDR STAVAPLSPRAR+GA VSMP+TWAQVR  LDP  +T+RT P LLR+SKAW DYD AARS+KAAMAKL
Sbjct:  485 VKQIMPALKAAAAKQNPFGGKNAPKKTTGVHWLKPELVAEIEFAGWTGDSMVRQASFKGLRKDKTPDEVVVDEPSNAPVAEPASRGKAAKGIAKRTTRARASRTSGNGAAVMGVVISKPDKALWPDGGDGEPVTKLDLAHYFESVGEWMIDHIKGRPCSIVRAPDGIHGETFFQRHVSAGMSNLFEQVTVSGDRKPYVQIDRIEGLIAAAQIGGLELHPWNCAQDEPEVPGRFVFDLDPAPDVDFDAVVDTAREMRERLAAVGLESFCKTTGGKGIHVVAPLKDAKKDRIDWKRAKAFAQAICQQMAVDNPERYLLNMSKKQRKGKIFLDYLRNDRMSTAVAPLSPRAREGATVSMPLTWAQVRRGLDPKTYTIRTAPALLRKSKAWADYDRAARSLKAAMAKL 888          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A0Q6Z004_9BRAD (DNA ligase (ATP) n=1 Tax=Afipia sp. Root123D2 TaxID=1736436 RepID=A0A0Q6Z004_9BRAD)

HSP 1 Score: 617 bits (1590), Expect = 1.270e-212
Identity = 304/411 (73.97%), Postives = 343/411 (83.45%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQP-PAKQSVLRKTSKPVS-----TRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLAK 1218
            I++I P+LK  A++ NPFGG NAPKKTSE+HWLKP LVAEIEFAGWTGD MVRQAAFKGLRKDKS  EVTVDKPVK  IA P P K+     T    S     TR A +   ++ V+GVAISKP+KA+WPDGGDGEPVTK DLA Y+E V  W++ HI+GRPCSIIRAPDGI GETFFQRH M GMS L+ L KVSGDRKPY+QIDR EGL+A AQIGGLEFHPWNCAPNEPDVPG+LVFDLDPAP++ F+AVVDAARE+ +RL  +GLE+FCKTTGGKGLHVV PLKDAKKDK+DWK AKAFAQ VCQ+MA  SPE YLLNMSK+QR GKIFLDYLRNDR +TAVAPLSPRAR GAPVSMP+TW QVRSDLDPMK+T+RTVP LL+ SKAW DYD AAR +KAA+AK+ K
Sbjct:  489 IKRIMPDLKAAASSTNPFGGTNAPKKTSEIHWLKPTLVAEIEFAGWTGDGMVRQAAFKGLRKDKSAREVTVDKPVKAGIAAPKPGKKDRSHATEASGSKVRGVTRTAKSTDSSAEVMGVAISKPDKAMWPDGGDGEPVTKRDLAQYLESVSGWMLRHIEGRPCSIIRAPDGIDGETFFQRHAMAGMSKLLDLKKVSGDRKPYLQIDRAEGLIAVAQIGGLEFHPWNCAPNEPDVPGQLVFDLDPAPEVAFNAVVDAAREMSDRLKELGLETFCKTTGGKGLHVVAPLKDAKKDKIDWKTAKAFAQKVCQQMAADSPERYLLNMSKQQRKGKIFLDYLRNDRMATAVAPLSPRARAGAPVSMPLTWMQVRSDLDPMKYTVRTVPALLKTSKAWADYDRAARPLKAAIAKIGK 899          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A090N7M3_AFIFE (DNA ligase (ATP) n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A090N7M3_AFIFE)

HSP 1 Score: 593 bits (1529), Expect = 1.330e-203
Identity = 288/404 (71.29%), Postives = 334/404 (82.67%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQP-PAKQSVLRKTSKPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKL 1212
            +++I PELK  A+  NPFGG+NAPKK ++VHW+KP+LVAEIEFAGWTGD+MVRQAAFKGLRKDKS  EV VD+P  T +A+P P K    +  S P          G + V+G+ ISKP+K LWPD G GEP+TKLDLA YME +GD+L+ HI+GRPCSIIRAPDGI GETFFQRH M GMSNLI  V+VSGDRKPY+QIDRVEGLVAAAQIGG+EFHPWNCA  EPDVPGRLVFDLDPAPD+ F+ V+ AAR+L ERL+++GLESFCKTTGGKGLHVVTPLKDAKKD++DWK AKAFAQAVCQ MA   PE YLLNMSKK+R GKIFLDYLRNDR STAVAP SPR R  APVSMP+TWAQVR  LDP+KFTLRTVP L+++SKAW DYD AA S+++A+ K+
Sbjct:  488 VKRIMPELKKAASTTNPFGGKNAPKKATDVHWVKPELVAEIEFAGWTGDSMVRQAAFKGLRKDKSADEVQVDEPTVTTVAKPAPRKIRAAKSASAP--------SKGNAIVMGLTISKPDKPLWPDDGKGEPITKLDLARYMESIGDYLLPHIEGRPCSIIRAPDGINGETFFQRHAMAGMSNLINEVRVSGDRKPYIQIDRVEGLVAAAQIGGVEFHPWNCAEGEPDVPGRLVFDLDPAPDVAFTDVIKAARDLHERLSSLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKGAKAFAQAVCQTMAADDPERYLLNMSKKKRDGKIFLDYLRNDRMSTAVAPFSPRGRKFAPVSMPLTWAQVRPGLDPLKFTLRTVPALVKKSKAWTDYDRAASSLRSAIKKI 883          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: B6JFK1_AFIC5 (DNA ligase (ATP) n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=B6JFK1_AFIC5)

HSP 1 Score: 583 bits (1504), Expect = 8.880e-200
Identity = 287/406 (70.69%), Postives = 335/406 (82.51%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKP---VSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKL 1212
            +++I PELK  A+  NPFGG+NAP+KT+ VHW+KP+LVAEIEFAGWTGDNMVRQAAFKGLRKDKS  EV VD+PV T IA+P                 +TR +S  SG + V+G+ ISKP+K LWPD G GEPVTKLDLA YME +G++L+ HI+GRPCSIIRAPDGI GE FFQRH   GMSNLI  V+VSGDRKPY+QIDR+EGLVAAAQIGG+EFHPWNCAPNEPDVPGRLVFDLDPAP + F+ V+ AAR+L +RL+++GLESFCKTTGGKGLHVVTPLKDAKKD++DWKAAKAFAQAVCQ MA  +PE YL+NMSKK+R GKIFLDYLRNDR STAVAP SPR RD APV+ P+TWAQ R+ LDP+KFTLRTVP L++ SKAW  YD AARS+K A+ K+
Sbjct:  484 VKRIMPELKKVASTTNPFGGKNAPRKTTGVHWVKPELVAEIEFAGWTGDNMVRQAAFKGLRKDKSADEVQVDEPVVTPIAEPAXXXXXXXXXXXXXXXAATRTSS--SGNAVVMGLTISKPDKPLWPDDGKGEPVTKLDLARYMETMGEYLLPHIEGRPCSIIRAPDGIEGEKFFQRHATAGMSNLIDQVRVSGDRKPYIQIDRIEGLVAAAQIGGVEFHPWNCAPNEPDVPGRLVFDLDPAPGVNFTDVITAARDLHDRLSSLGLESFCKTTGGKGLHVVTPLKDAKKDRIDWKAAKAFAQAVCQAMAADAPERYLINMSKKKREGKIFLDYLRNDRMSTAVAPFSPRGRDFAPVAWPITWAQARTGLDPLKFTLRTVPALVKTSKAWAGYDRAARSLKDAIRKM 887          
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Match: A0A380W9P9_AFIFE (DNA ligase (ATP) n=1 Tax=Afipia felis TaxID=1035 RepID=A0A380W9P9_AFIFE)

HSP 1 Score: 583 bits (1502), Expect = 1.730e-199
Identity = 277/405 (68.40%), Postives = 334/405 (82.47%), Query Frame = 1
Query:    4 IRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGDNMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTRGASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLIEHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQIDRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVDAARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQAVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARDGAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAAMAKLAK 1218
            ++QI PELK  A+  NPFGG+NAP+KT+ +HW+KP+LVAEIEFAGWTGDNMVRQAAFKGLRKDKS  EV VD+P  T +A+P  +++  +K++   S   A +    + V+G+ ISKP+K LWPD G GEP+TKLDLA YME +G+ L+ HI+GRPCSIIRAPDGI GETFFQRH M GMSNLI  V+VSGDRKPY+QIDR+EGLVAAAQIGG+EFHPWNCA  EP+VPGRLVFDLDPAPD+ F+ V+ AAR++ +RL+++GLESFCKTTGGKGLHVV PLKD KKD++DWK AKAFAQAVCQ MA   P+ YLLNMSK +R G+IFLDYLRNDR STAVAP SPR R  APVSMP+TW QVR  LDP+KF LRTVP L+++SKAW DYD AARS+K+A+ K+ +
Sbjct:  484 VKQIMPELKKVASTTNPFGGKNAPRKTTGIHWVKPELVAEIEFAGWTGDNMVRQAAFKGLRKDKSAGEVQVDEPFATTVAEPAPRKTRAKKSASTSSKGSAVSSKSNAVVMGLTISKPDKPLWPDDGKGEPITKLDLARYMEDIGEHLLPHIEGRPCSIIRAPDGIDGETFFQRHAMAGMSNLIDEVRVSGDRKPYIQIDRIEGLVAAAQIGGVEFHPWNCAEGEPEVPGRLVFDLDPAPDVAFTEVIKAARDMHDRLSSLGLESFCKTTGGKGLHVVAPLKDTKKDRIDWKTAKAFAQAVCQAMAADDPKRYLLNMSKAKREGRIFLDYLRNDRMSTAVAPFSPRGRKFAPVSMPLTWTQVRPGLDPVKFRLRTVPPLVKKSKAWADYDRAARSLKSAIKKIGR 888          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19119.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4U6BNP5_9BRAD5.400e-23380.59DNA ligase (ATP) n=11 Tax=Proteobacteria TaxID=122... [more]
UPI001F4437391.930e-23180.00DNA ligase D n=1 Tax=Bradyrhizobium sp. G127 TaxID... [more]
F7QJS4_9BRAD3.700e-22578.77DNA ligase (ATP) n=2 Tax=Bradyrhizobiaceae TaxID=4... [more]
A0A8I1RR00_9BRAD3.280e-22378.02DNA ligase (ATP) n=1 Tax=Afipia sp. TaxID=1871052 ... [more]
A0A5C8CQJ5_9BRAD1.510e-22177.48DNA ligase (ATP) n=1 Tax=Afipia sp. TaxID=1871052 ... [more]
A0A1Q3W0Z2_9BRAD6.810e-21374.01DNA ligase (ATP) n=1 Tax=Afipia sp. 64-13 TaxID=18... [more]
A0A0Q6Z004_9BRAD1.270e-21273.97DNA ligase (ATP) n=1 Tax=Afipia sp. Root123D2 TaxI... [more]
A0A090N7M3_AFIFE1.330e-20371.29DNA ligase (ATP) n=3 Tax=Bradyrhizobiaceae TaxID=4... [more]
B6JFK1_AFIC58.880e-20070.69DNA ligase (ATP) n=1 Tax=Afipia carboxidovorans (s... [more]
A0A380W9P9_AFIFE1.730e-19968.40DNA ligase (ATP) n=1 Tax=Afipia felis TaxID=1035 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19119contigP-wetherbeei_contig19119:3..1223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog883078.HMPREF9695_00374
Preferred nameligD
PFAMsDNA_ligase_A_C,DNA_ligase_A_M,LigD_N
Model size1221
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00005
KEGG koko:K01971
KEGG ReactionR00381
KEGG Pathwayko03450,map03450
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.31e-238
EggNOG OGsCOG1793@1|root,COG3285@1|root,COG1793@2|Bacteria,COG3285@2|Bacteria,1MVWY@1224|Proteobacteria,2TRSZ@28211|Alphaproteobacteria,3JR3Z@41294|Bradyrhizobiaceae
EC6.5.1.1
DescriptionDNA ligase
Cds size1221
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186164.4080887-CDS-P-wetherbeei_contig19119:2..12231683186164.4080887-CDS-P-wetherbeei_contig19119:2..1223Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19119 3..1223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19119.1.1prot_P-wetherbeei_contig19119.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19119 3..1223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19119.1.1

>prot_P-wetherbeei_contig19119.1.1 ID=prot_P-wetherbeei_contig19119.1.1|Name=mRNA_P-wetherbeei_contig19119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=407bp
TIRQITPELKINAAAKNPFGGENAPKKTSEVHWLKPKLVAEIEFAGWTGD
NMVRQAAFKGLRKDKSPSEVTVDKPVKTQIAQPPAKQSVLRKTSKPVSTR
GASTKSGASTVLGVAISKPEKALWPDGGDGEPVTKLDLAHYMEQVGDWLI
EHIKGRPCSIIRAPDGIGGETFFQRHGMVGMSNLIGLVKVSGDRKPYVQI
DRVEGLVAAAQIGGLEFHPWNCAPNEPDVPGRLVFDLDPAPDLPFSAVVD
AARELRERLTAVGLESFCKTTGGKGLHVVTPLKDAKKDKVDWKAAKAFAQ
AVCQKMAEGSPEHYLLNMSKKQRGGKIFLDYLRNDRTSTAVAPLSPRARD
GAPVSMPVTWAQVRSDLDPMKFTLRTVPTLLRRSKAWVDYDGAARSIKAA
MAKLAK*
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mRNA from alignment at P-wetherbeei_contig19119:3..1223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19119.1.1 ID=mRNA_P-wetherbeei_contig19119.1.1|Name=mRNA_P-wetherbeei_contig19119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1221bp|location=Sequence derived from alignment at P-wetherbeei_contig19119:3..1223+ (Phaeothamnion wetherbeei SAG_119_79)
ACGATCAGGCAGATCACGCCCGAATTGAAGATCAACGCAGCCGCCAAAAA CCCATTCGGAGGTGAAAACGCACCAAAAAAAACATCCGAGGTGCATTGGC TGAAGCCAAAGCTTGTCGCAGAAATCGAATTTGCCGGCTGGACCGGTGAC AACATGGTGAGACAGGCTGCGTTCAAGGGACTACGCAAGGACAAGTCGCC GAGCGAGGTGACCGTGGACAAGCCGGTCAAAACGCAGATCGCGCAACCGC CTGCCAAGCAGTCGGTTCTCAGGAAGACCAGTAAACCTGTATCGACGAGA GGCGCATCCACGAAAAGCGGCGCTTCAACCGTACTGGGCGTCGCCATCTC CAAACCCGAGAAGGCGCTGTGGCCTGACGGTGGCGACGGCGAGCCCGTTA CCAAGCTCGATCTCGCACACTACATGGAGCAGGTCGGCGACTGGTTGATC GAACATATCAAGGGTCGCCCCTGCTCAATCATCCGTGCGCCGGACGGCAT CGGCGGTGAGACGTTTTTCCAGCGTCATGGCATGGTCGGCATGTCCAACC TGATCGGCCTCGTGAAGGTTTCCGGCGACCGCAAACCCTACGTGCAGATC GATCGCGTGGAAGGACTCGTCGCCGCCGCGCAGATCGGCGGGCTCGAATT TCATCCCTGGAATTGCGCGCCGAATGAGCCCGATGTGCCGGGCCGGCTGG TGTTCGATCTGGACCCTGCCCCGGATCTGCCATTCTCCGCCGTGGTCGAT GCCGCACGCGAACTACGGGAGCGATTGACCGCAGTTGGATTGGAGAGCTT CTGCAAAACGACCGGTGGCAAGGGCCTTCACGTCGTCACCCCGTTGAAGG ATGCGAAGAAAGACAAGGTCGACTGGAAAGCCGCAAAGGCGTTCGCGCAA GCCGTTTGCCAGAAAATGGCTGAAGGCAGCCCCGAACACTACCTGCTCAA CATGTCGAAGAAACAACGCGGTGGAAAAATCTTTCTCGACTATCTGCGCA ACGACCGCACATCGACCGCCGTTGCACCGCTATCGCCGCGCGCACGCGAT GGCGCGCCGGTTTCGATGCCTGTCACATGGGCGCAGGTCCGTAGCGACCT CGATCCGATGAAGTTTACACTGCGCACGGTCCCCACGCTGTTGCGCAGGA GCAAGGCGTGGGTGGATTACGACGGCGCCGCGCGATCGATCAAGGCGGCG ATGGCGAAGCTCGCAAAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19119:3..1223+

>mRNA_P-wetherbeei_contig19119.1.1 ID=mRNA_P-wetherbeei_contig19119.1.1|Name=mRNA_P-wetherbeei_contig19119.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1221bp|location=Sequence derived from alignment at P-wetherbeei_contig19119:3..1223+ (Phaeothamnion wetherbeei SAG_119_79)
ACGATCAGGCAGATCACGCCCGAATTGAAGATCAACGCAGCCGCCAAAAA
CCCATTCGGAGGTGAAAACGCACCAAAAAAAACATCCGAGGTGCATTGGC
TGAAGCCAAAGCTTGTCGCAGAAATCGAATTTGCCGGCTGGACCGGTGAC
AACATGGTGAGACAGGCTGCGTTCAAGGGACTACGCAAGGACAAGTCGCC
GAGCGAGGTGACCGTGGACAAGCCGGTCAAAACGCAGATCGCGCAACCGC
CTGCCAAGCAGTCGGTTCTCAGGAAGACCAGTAAACCTGTATCGACGAGA
GGCGCATCCACGAAAAGCGGCGCTTCAACCGTACTGGGCGTCGCCATCTC
CAAACCCGAGAAGGCGCTGTGGCCTGACGGTGGCGACGGCGAGCCCGTTA
CCAAGCTCGATCTCGCACACTACATGGAGCAGGTCGGCGACTGGTTGATC
GAACATATCAAGGGTCGCCCCTGCTCAATCATCCGTGCGCCGGACGGCAT
CGGCGGTGAGACGTTTTTCCAGCGTCATGGCATGGTCGGCATGTCCAACC
TGATCGGCCTCGTGAAGGTTTCCGGCGACCGCAAACCCTACGTGCAGATC
GATCGCGTGGAAGGACTCGTCGCCGCCGCGCAGATCGGCGGGCTCGAATT
TCATCCCTGGAATTGCGCGCCGAATGAGCCCGATGTGCCGGGCCGGCTGG
TGTTCGATCTGGACCCTGCCCCGGATCTGCCATTCTCCGCCGTGGTCGAT
GCCGCACGCGAACTACGGGAGCGATTGACCGCAGTTGGATTGGAGAGCTT
CTGCAAAACGACCGGTGGCAAGGGCCTTCACGTCGTCACCCCGTTGAAGG
ATGCGAAGAAAGACAAGGTCGACTGGAAAGCCGCAAAGGCGTTCGCGCAA
GCCGTTTGCCAGAAAATGGCTGAAGGCAGCCCCGAACACTACCTGCTCAA
CATGTCGAAGAAACAACGCGGTGGAAAAATCTTTCTCGACTATCTGCGCA
ACGACCGCACATCGACCGCCGTTGCACCGCTATCGCCGCGCGCACGCGAT
GGCGCGCCGGTTTCGATGCCTGTCACATGGGCGCAGGTCCGTAGCGACCT
CGATCCGATGAAGTTTACACTGCGCACGGTCCCCACGCTGTTGCGCAGGA
GCAAGGCGTGGGTGGATTACGACGGCGCCGCGCGATCGATCAAGGCGGCG
ATGGCGAAGCTCGCAAAATAA
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