mRNA_P-wetherbeei_contig19116.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19116.1.1
Unique NamemRNA_P-wetherbeei_contig19116.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19116.1.1 vs. uniprot
Match: A0A836CHB2_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.650e-10
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   49 PPAEGWVRVPSREREGGISYENIWTGERVAERPRAPA 159
            PP EGWVRV S  R GG SYENIWTGERVA+ PRAPA
Sbjct:  235 PPPEGWVRVESTLRAGGWSYENIWTGERVADAPRAPA 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19116.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CHB2_9STRA2.650e-1078.38Ras family-domain-containing protein n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19116contigP-wetherbeei_contig19116:930..1088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog81824.XP_001746841.1
PFAMsSH3_1,SH3_9
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K06086
KEGG Pathwayko03320,ko04520,ko04910,map03320,map04520,map04910
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515
Exons1
Evalue0.000288
EggNOG OGsKOG4225@1|root,KOG4225@2759|Eukaryota
Descriptionsuperoxide-generating NADPH oxidase activator activity
Cds size159
COG categoryS
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186164.3500962-CDS-P-wetherbeei_contig19116:929..10881683186164.3500962-CDS-P-wetherbeei_contig19116:929..1088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19116 930..1088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19116.1.1prot_P-wetherbeei_contig19116.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19116 930..1088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19116.1.1

>prot_P-wetherbeei_contig19116.1.1 ID=prot_P-wetherbeei_contig19116.1.1|Name=mRNA_P-wetherbeei_contig19116.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=53bp
AATAGAAATDNFEADLPPAEGWVRVPSREREGGISYENIWTGERVAERPR
APA
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mRNA from alignment at P-wetherbeei_contig19116:930..1088+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19116.1.1 ID=mRNA_P-wetherbeei_contig19116.1.1|Name=mRNA_P-wetherbeei_contig19116.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig19116:930..1088+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGACTGCCGGCGCTGCCGCCACCGACAATTTTGAGGCGGACTTGCC
GCCCGCAGAGGGGTGGGTTCGGGTTCCGAGCCGCGAGCGCGAGGGCGGCA
TAAGCTACGAGAACATCTGGACCGGGGAGCGTGTCGCCGAGCGGCCCAGG
GCGCCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19116:930..1088+

>mRNA_P-wetherbeei_contig19116.1.1 ID=mRNA_P-wetherbeei_contig19116.1.1|Name=mRNA_P-wetherbeei_contig19116.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=159bp|location=Sequence derived from alignment at P-wetherbeei_contig19116:930..1088+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGACTGCCGGCGCTGCCGCCACCGACAATTTTGAGGCGGACTTGCC
GCCCGCAGAGGGGTGGGTTCGGGTTCCGAGCCGCGAGCGCGAGGGCGGCA
TAAGCTACGAGAACATCTGGACCGGGGAGCGTGTCGCCGAGCGGCCCAGG
GCGCCGGCG
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