mRNA_P-wetherbeei_contig19107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A2E0RW76_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RW76_9ACTN) HSP 1 Score: 67.8 bits (164), Expect = 1.610e-11 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 214 AIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
A D DEL D + L +RQ+A +V+RY LDL+EADIA AL+CRP TV+S+ R L +RKE+
Sbjct: 105 ASDPVDELIDIIADLSYRQRAVVVMRYWLDLSEADIAQALECRPGTVKSLHSRALAAIRKEL 166
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A7K1B8P8_9ACTN (Sigma-70 family RNA polymerase sigma factor n=2 Tax=root TaxID=1 RepID=A0A7K1B8P8_9ACTN) HSP 1 Score: 67.0 bits (162), Expect = 2.750e-11 Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 232 ELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
EL DAL+ LP RQ+ A+VLRY DL EA+IA LDCRP+TVR+++ RGL LR +
Sbjct: 104 ELRDALQQLPARQRTAIVLRYLCDLPEAEIADILDCRPTTVRTLVHRGLADLRTRI 159
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A538IX50_9ACTN (SigE family RNA polymerase sigma factor n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538IX50_9ACTN) HSP 1 Score: 67.0 bits (162), Expect = 3.550e-11 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 196 IAAQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEVVS 405
I A +++ L ALR LP RQ+AALVLR++ D +EA A + CRP TV+S++ R L+TLRKE+ S
Sbjct: 101 IGAPAHSVEDRQALAAALRKLPQRQRAALVLRFYEDQSEAQTADLIGCRPGTVKSLVSRALETLRKEIGS 170
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A542DXX0_9MICO (RNA polymerase sigma-70 factor (Sigma-E family) n=1 Tax=Lapillicoccus jejuensis TaxID=402171 RepID=A0A542DXX0_9MICO) HSP 1 Score: 66.6 bits (161), Expect = 5.070e-11 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 217 IDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKE 396
+D L L LP RQ+AALVLRY+LDL E +IATA+ CRP+TVRS++ RGL LR +
Sbjct: 103 LDDRSALWLMLLTLPERQRAALVLRYYLDLPETEIATAIGCRPATVRSLVSRGLAALRTQ 162
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A1H0TQV6_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=2 Tax=Klenkia soli TaxID=1052260 RepID=A0A1H0TQV6_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 5.760e-11 Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 223 VHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLR 390
V D+L L GLP RQ+AALVLRY+ DL + +IA L CRP TVRS++ RGL TLR
Sbjct: 112 VDDQLWHRLPGLPARQRAALVLRYYEDLDDDEIAECLACRPGTVRSLVSRGLATLR 167
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A1M5GG82_9ACTN (RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Jatrophihabitans endophyticus TaxID=1206085 RepID=A0A1M5GG82_9ACTN) HSP 1 Score: 66.6 bits (161), Expect = 7.200e-11 Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 229 DELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLR 390
D+L D L GLP RQ+AALVLR+ DL +AD A AL CR TVRS+I RGL TLR
Sbjct: 129 DQLRDVLAGLPDRQRAALVLRFFEDLDDADTADALGCRVGTVRSLISRGLATLR 182
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A538B126_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538B126_9ACTN) HSP 1 Score: 65.1 bits (157), Expect = 1.690e-10 Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 244 ALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
AL LP RQ+AA+VLR++LDL+EA+ A AL CRP T +S++ RGL TLR E+
Sbjct: 112 ALLRLPHRQRAAIVLRFYLDLSEAETAEALRCRPGTAKSLVSRGLRTLRNEL 163
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A542ZHK9_9MICO (RNA polymerase sigma-70 factor (Sigma-E family) n=1 Tax=Oryzihumus leptocrescens TaxID=297536 RepID=A0A542ZHK9_9MICO) HSP 1 Score: 64.3 bits (155), Expect = 3.980e-10 Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 190 TVIAAQELAI--DVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
T +A+E A+ + +EL ALRGLP RQ+ LVLRY+LDLTEA IA AL P +V+S RGL +LR ++
Sbjct: 101 TEASAEERAVAHEQGEELLSALRGLPRRQREVLVLRYYLDLTEAQIADALGISPGSVKSHAHRGLSSLRTQM 172
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A849A337_9ACTN (SigE family RNA polymerase sigma factor n=1 Tax=Nakamurella aerolata TaxID=1656892 RepID=A0A849A337_9ACTN) HSP 1 Score: 64.7 bits (156), Expect = 4.090e-10 Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 199 AAQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRKEV 399
+AQ +A HDEL L LP +QQAAL LRY+LDL++ IA L C+P++VR I RGL LR E+
Sbjct: 108 SAQRIA--EHDELAQQLASLPKQQQAALALRYYLDLSDDAIAAELGCKPASVRGYISRGLAALRIEL 172
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Match: A0A372G7J9_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomadura TaxID=1988 RepID=A0A372G7J9_9ACTN) HSP 1 Score: 64.3 bits (155), Expect = 5.040e-10 Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 1
Query: 61 DRSGC---VRGLAIDSHRR--REPGRLPAP----LGHQRLHSTHRHNSVVSRTVIA--------------AQELAIDVHDELGDALRGLPWRQQAALVLRYHLDLTEADIATALDCRPSTVRSIIKRGLDTLRK 393
DR+G V+ + HRR R PGRLPA L + R + +++ R +A + + D + AL GLP RQ+ A+VLRY+LDL+EA+IA A+ R TV+S I RGLD LR+
Sbjct: 51 DRAGAEDVVQDVYARLHRRAARGPGRLPAAPPELLAYARASVLNACRTLLRRRALARGLVQAPQPVWSAESDAMLADDRRRVLQALVGLPVRQREAIVLRYYLDLSEAEIAAAMGVRAGTVKSTISRGLDALRR 184 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19107.1.1 >prot_P-wetherbeei_contig19107.1.1 ID=prot_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp MESAVAHGLRIGGIADARRRDRSGCVRGLAIDSHRRREPGRLPAPLGHQRback to top mRNA from alignment at P-wetherbeei_contig19107:330..737+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19107.1.1 ID=mRNA_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig19107:330..737+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19107:330..737+ >mRNA_P-wetherbeei_contig19107.1.1 ID=mRNA_P-wetherbeei_contig19107.1.1|Name=mRNA_P-wetherbeei_contig19107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig19107:330..737+ (Phaeothamnion wetherbeei SAG_119_79)back to top |