mRNA_P-wetherbeei_contig19091.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19091.1.1
Unique NamemRNA_P-wetherbeei_contig19091.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19091.1.1 vs. uniprot
Match: A0A7X9ADU7_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9ADU7_9BURK)

HSP 1 Score: 179 bits (454), Expect = 1.550e-48
Identity = 104/253 (41.11%), Postives = 142/253 (56.13%), Query Frame = 1 
Query:    1 IYNQVHAVFGQEWNSGGGNDSDPRVVVCFLSTATMGSDGLFGYVDLADELANRGQSIGGSQSNGGEILYLHAQPSSVSNFFQGDGFDGYATMAHELEHLTIFNNKYAQQGTFPSNASEDSPSVDEGLATLAEEDCGFSLTATGGGNSFIFDVIKAYEQGRHGVSSFFTF-NEGGDYGKAYLFFKYIQDTAGLSAITAISTSTQTGSANIATQVGRSFADQQQRWALANYVSGFASGGAPYRYNSLNLTGTYSL 756
            I ++V ++FG EW++GGG D + +++   LS+  +G   L+G+    D  +     +    SN GEILY++A      N F GD FDG AT+AHE +H+  FN KY  +G F  N +++  +++EG + LAEE  GF L A GGGNSF+F   + Y Q  H  + FFTF N   DYGK YL  KYI D  G+  +  ISTS   G  NIA Q G  F    Q WALAN +   +   A Y Y  LNL   Y++
Sbjct:  217 IGSRVRSIFGSEWSTGGGRDGETKIIFVLLSSEGIGGANLYGFFRPNDAFSK----VQIPNSNEGEILYMNA------NHFNGDMFDGLATVAHEFQHMCNFNQKYLHEGAF--NGTDEDDTINEGQSVLAEEKTGFGLIAPGGGNSFLFIAARGYLQAPHNYA-FFTFDNYNADYGKGYLLMKYIHDRFGVDTVYRISTSRAVGRNNIANQTGIPFGTLFQDWALANLLDPVSGAPAKYTYAGLNLDANYNI 456
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BLAST of mRNA_P-wetherbeei_contig19091.1.1 vs. uniprot
Match: A0A2A5DQL3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A5DQL3_9BACT)

HSP 1 Score: 108 bits (269), Expect = 1.540e-22
Identity = 83/280 (29.64%), Postives = 137/280 (48.93%), Query Frame = 1 
Query:    1 IYNQVHAVFGQEW---------NSGGGNDSDPRVVVCFLSTATMGSDGLFGYVDLADELANRGQSIGGSQSNGGEILYLHAQPSSVSNFFQGDGFDGYATMAHELEHLTIFNNKYAQQG------TFPSNASEDSPSV-DEGLATLAEEDCGFSLTAT----GGGNSFIFDVIKAYEQGRHGVS----SFFTFNEGGDYGKAYLFFKYIQDTAGLSAITAISTSTQTGSANIATQVGRSFADQQQRWALANYVSGFASGGAPYRYNSLNLTGTYSLHNNN 768
            I++ V   FG  W         N+GG ++  P +++ F S +   S  LFGY    DE      +  G  SNG EI++L+         +  D  + ++T++HE +HL  +N K+   G      T+ ++  ED+P++ +EG + L E+ CGFSL  T    G GN F+F++I  Y   R+ +S    SF  +N G DYGK YLF++YI D+ G   +   +T       ++     ++F    Q + +A   +   +  + Y+  SL++T  Y   N N
Sbjct:  239 IFDTVTKTFGNPWGIDSSGNKINNGGRDEEAPVLIILFNSGS---STNLFGYFYWVDEEEKGYVNSDGYISNGAEIIFLNQH-------YADDDINLFSTLSHEFQHLCDYNQKFVLNGDFTTTITYQASYDEDTPTMFNEGKSMLCEDLCGFSLDVTENGGGKGNKFMFNMINTY---RNTLSINSKSFLNWNGGSDYGKGYLFWRYIYDSYGSDILKKAATDKSLPPESLEVATSKNFDILLQEFLIALIQTESKNSSSVYKITSLDITKDYKDTNGN 505
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BLAST of mRNA_P-wetherbeei_contig19091.1.1 vs. uniprot
Match: A0A2A5DQR1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A5DQR1_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 1.890e-18
Identity = 89/279 (31.90%), Postives = 131/279 (46.95%), Query Frame = 1 
Query:    1 IYNQVHAVFGQEWN--------SGGGNDSD-PRVVVCFLSTATMGSDGLFGYVDLADE-LANRGQSIGGSQSNGGEILYLHAQPSSVSNFFQGDGFDGYATMAHELEHLTIFNNKYAQQGTFP-----SNASEDSPSV--DEGLATLAEEDCGFSLTATGG----GNSFIFDVIKAYE-----QGRHGVSSFFTFNEGGD-YGKAYLFFKYIQDTAGLSAITAISTSTQTGSANIATQVGRSF--ADQQQRWALANYVSGFASGGAPYRYNSLNLTGTY 750
            I++ V   FG  W           GG D + P +++ +  +    + G F  VD  ++   N   +     SNG EI+Y       ++ F   D  D   T+AHE +HL  FN K    GTFP     S+ +    SV  +EG + L EE  GFSL  T      GN FIF+ + +Y      +    + +FF F  GGD YGK YLF+++I DT G + +T+ S S+     +I T  G+      QQ + AL    SG  S  A  + +S+++T TY
Sbjct:  229 IFDVVTKTFGSPWGIDSDGNKVGDGGRDGEAPVIILIYNGSFDQSTLGYFYPVDEKEKGFINPSDNY---VSNGAEIVY-------INRFVADDDIDVLGTLAHEFQHLCEFNQKEGVNGTFPVIEFNSDTTNQLISVLFNEGKSVLCEELNGFSLEITSSSTEIGNGFIFNAVNSYFNLISFKKTSSLPNFFAFEGGGDDYGKGYLFWRFIYDTYGAAVVTSASKSSDYAPKSIETATGKDIDVLIQQFQMALMQLNSGSPSD-ASNKISSIDVTKTY 496
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19091.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X9ADU7_9BURK1.550e-4841.11Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A2A5DQL3_9BACT1.540e-2229.64Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2A5DQR1_9BACT1.890e-1831.90Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19091contigP-wetherbeei_contig19091:357..1307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size951
Hectar predicted targeting categoryother localisation
Exons1
Cds size951
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.7618382-CDS-P-wetherbeei_contig19091:356..13071683186163.7618382-CDS-P-wetherbeei_contig19091:356..1307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19091 357..1307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19091.1.1prot_P-wetherbeei_contig19091.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19091 357..1307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19091.1.1

>prot_P-wetherbeei_contig19091.1.1 ID=prot_P-wetherbeei_contig19091.1.1|Name=mRNA_P-wetherbeei_contig19091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
IYNQVHAVFGQEWNSGGGNDSDPRVVVCFLSTATMGSDGLFGYVDLADEL
ANRGQSIGGSQSNGGEILYLHAQPSSVSNFFQGDGFDGYATMAHELEHLT
IFNNKYAQQGTFPSNASEDSPSVDEGLATLAEEDCGFSLTATGGGNSFIF
DVIKAYEQGRHGVSSFFTFNEGGDYGKAYLFFKYIQDTAGLSAITAISTS
TQTGSANIATQVGRSFADQQQRWALANYVSGFASGGAPYRYNSLNLTGTY
SLHNNNDSSSPVSGTLPGIVSEQTLAQSSSTTQNLIAFSQYYLNLGAGTG
TTTATVANPSNFETSLV
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mRNA from alignment at P-wetherbeei_contig19091:357..1307-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19091.1.1 ID=mRNA_P-wetherbeei_contig19091.1.1|Name=mRNA_P-wetherbeei_contig19091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig19091:357..1307- (Phaeothamnion wetherbeei SAG_119_79)
ATCTACAACCAGGTCCACGCCGTCTTCGGCCAGGAATGGAATTCAGGAGG
CGGTAACGACTCCGATCCCCGCGTGGTGGTCTGCTTCCTTTCCACGGCCA
CGATGGGCTCCGATGGGCTCTTTGGTTATGTCGATCTAGCCGACGAGTTG
GCCAATCGTGGCCAGTCCATCGGCGGCAGCCAGAGCAACGGCGGGGAAAT
TCTTTATCTGCACGCCCAGCCTTCCTCAGTCTCCAATTTCTTCCAGGGCG
ACGGCTTCGACGGCTACGCCACCATGGCTCACGAACTCGAGCATCTCACC
ATCTTCAACAACAAATACGCGCAGCAGGGCACCTTCCCCAGCAACGCCAG
CGAGGACTCGCCGTCGGTGGACGAGGGTCTGGCGACACTGGCCGAAGAGG
ATTGCGGATTCAGCCTGACCGCCACGGGCGGCGGCAACAGCTTCATTTTT
GATGTAATCAAGGCATATGAGCAGGGTCGCCACGGTGTATCCAGTTTCTT
TACCTTCAATGAAGGCGGCGATTACGGCAAAGCCTACCTGTTCTTCAAGT
ACATTCAGGACACAGCAGGGCTCTCGGCCATCACGGCGATTTCCACCAGC
ACCCAAACCGGCAGCGCCAACATCGCTACCCAGGTGGGTCGCAGCTTTGC
CGATCAGCAGCAGCGCTGGGCTCTGGCTAACTACGTGAGTGGCTTTGCTT
CCGGCGGGGCCCCCTATCGCTACAACAGCCTGAATCTAACAGGGACTTAC
TCGCTACATAACAACAACGATTCAAGCTCTCCCGTAAGCGGCACTTTGCC
GGGAATCGTCAGCGAACAGACTCTGGCCCAGAGCTCCTCCACGACGCAAA
ACCTTATCGCTTTCAGCCAGTATTATCTGAATCTCGGTGCCGGCACCGGA
ACCACCACAGCGACTGTAGCGAACCCATCTAACTTCGAGACGTCTCTGGT
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19091:357..1307-

>mRNA_P-wetherbeei_contig19091.1.1 ID=mRNA_P-wetherbeei_contig19091.1.1|Name=mRNA_P-wetherbeei_contig19091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig19091:357..1307- (Phaeothamnion wetherbeei SAG_119_79)
ATCTACAACCAGGTCCACGCCGTCTTCGGCCAGGAATGGAATTCAGGAGG
CGGTAACGACTCCGATCCCCGCGTGGTGGTCTGCTTCCTTTCCACGGCCA
CGATGGGCTCCGATGGGCTCTTTGGTTATGTCGATCTAGCCGACGAGTTG
GCCAATCGTGGCCAGTCCATCGGCGGCAGCCAGAGCAACGGCGGGGAAAT
TCTTTATCTGCACGCCCAGCCTTCCTCAGTCTCCAATTTCTTCCAGGGCG
ACGGCTTCGACGGCTACGCCACCATGGCTCACGAACTCGAGCATCTCACC
ATCTTCAACAACAAATACGCGCAGCAGGGCACCTTCCCCAGCAACGCCAG
CGAGGACTCGCCGTCGGTGGACGAGGGTCTGGCGACACTGGCCGAAGAGG
ATTGCGGATTCAGCCTGACCGCCACGGGCGGCGGCAACAGCTTCATTTTT
GATGTAATCAAGGCATATGAGCAGGGTCGCCACGGTGTATCCAGTTTCTT
TACCTTCAATGAAGGCGGCGATTACGGCAAAGCCTACCTGTTCTTCAAGT
ACATTCAGGACACAGCAGGGCTCTCGGCCATCACGGCGATTTCCACCAGC
ACCCAAACCGGCAGCGCCAACATCGCTACCCAGGTGGGTCGCAGCTTTGC
CGATCAGCAGCAGCGCTGGGCTCTGGCTAACTACGTGAGTGGCTTTGCTT
CCGGCGGGGCCCCCTATCGCTACAACAGCCTGAATCTAACAGGGACTTAC
TCGCTACATAACAACAACGATTCAAGCTCTCCCGTAAGCGGCACTTTGCC
GGGAATCGTCAGCGAACAGACTCTGGCCCAGAGCTCCTCCACGACGCAAA
ACCTTATCGCTTTCAGCCAGTATTATCTGAATCTCGGTGCCGGCACCGGA
ACCACCACAGCGACTGTAGCGAACCCATCTAACTTCGAGACGTCTCTGGT
C
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