mRNA_P-wetherbeei_contig1906.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1906.4.1
Unique NamemRNA_P-wetherbeei_contig1906.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: D7FLS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS7_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 2.350e-33
Identity = 71/119 (59.66%), Postives = 90/119 (75.63%), Query Frame = 1
Query:   19 EVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGA 375
            EVD E+KK Q +Q E+ AL + R++FYQQANENGMVKQELDLLED+A    VFKL+GPVL+KQD+ EA+ NV  RLELI+REM KV K   EKQ  + AI ++++ MQ  M++ AAE A
Sbjct:    9 EVDAELKKLQGVQSELQALAASRSQFYQQANENGMVKQELDLLEDEAP---VFKLVGPVLIKQDLEEAKQNVAKRLELIEREMAKVSKAFEEKQKEEAAIGDEIMRMQGGMKERAAEEA 124          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: A0A7S2Y415_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y415_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.970e-32
Identity = 71/128 (55.47%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 MDSGKAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEA 384
            M  GKAEV+ EV+KY+ +  EI  L+ +R K YQQANENGMVKQELDLL+     + V+K+IGPVL+KQD+ EAR NV  RL+LIQREM ++E  +  KQ  Q  + EK+++MQQAMQ  A E A++A
Sbjct:    1 MAEGKAEVEAEVEKYKALNAEIQELMEKRQKTYQQANENGMVKQELDLLDS---TTPVYKMIGPVLMKQDLDEARDNVAKRLDLIQREMKRIEGTLEGKQKQQAELGEKIMKMQQAMQARAVEAAKKA 125          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: A0A835ZF83_9STRA (Prefoldin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF83_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.650e-26
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   22 VDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEAV 387
            VD E+K+YQ++Q+E++     RN+ YQQANENGMVKQEL+LL+     ++VFK+I PVL+KQD+ EA+ NV  R+E IQ EM KVEK I  K   Q  I + + +MQ  MQ  AAE A++AV
Sbjct:   11 VDVELKRYQELQDELTQFSQVRNQLYQQANENGMVKQELELLKP---GTKVFKMITPVLLKQDLDEAKVNVAKRIEFIQGEMAKVEKQIEAKTKEQAEIGDNIAKMQGEMQARAAEEARKAV 129          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: A0A1V9ZUD3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUD3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.190e-25
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   25 DKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGA 375
            D E+  Y+ +QEE++ L +QR  + QQ NEN MVKQELDLL+D A+   V+KL+GPVL+KQD  EA++NV  RLE IQ EM KVEK +  K+     I + +  +Q  MQK+AAEGA
Sbjct:    8 DAEMAAYRALQEEVTVLANQRQLYAQQQNENSMVKQELDLLDDGAK---VYKLVGPVLLKQDTAEAKSNVSKRLEFIQNEMEKVEKKLQAKEEEAVKIRQNIASIQMQMQKSAAEGA 121          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: A0A3F2RF90_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF90_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.660e-25
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   13 KAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEAV 387
            K +V+ E+ +Y+ +Q+E+  L +QR  + QQANEN MVK+ELDLL+++A+   VFKL+GPVL+KQDV EA+ NV  RLE I  E+GKV   I  K+     I   +  MQ  MQK AAE A+ AV
Sbjct:    5 KDQVEAEMTRYRALQDEVQVLAAQRQTYAQQANENDMVKKELDLLDEEAK---VFKLVGPVLLKQDVDEAKTNVNKRLEFINNELGKVNTKIEAKEKEAMGIRTNISNMQMEMQKRAAEAAKSAV 126          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: A0A5D6XI54_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI54_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.610e-25
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   13 KAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEAV 387
            K +VD E+ +Y+ +QEE+  L +QR ++ QQANEN MVK+ELDLL DDA+   VFKLIGPVL+KQDV EA+ANV  RLE I  E+ KV   I  K+     I   +  +Q  MQK A E A+ AV
Sbjct:    6 KDQVDAEMARYRVLQEEVQVLATQRQQYAQQANENTMVKKELDLLSDDAK---VFKLIGPVLLKQDVDEAKANVNKRLEFINNELQKVNAKIDLKEKDAVEIRSTIASLQMEMQKRATEAARGAV 127          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: W4H7L6_9STRA (Uncharacterized protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=W4H7L6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.020e-24
Identity = 62/119 (52.10%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   19 EVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGA 375
            + D E+  Y+ +QEE++ L +QR  + QQ NEN MVKQELDLL D    S+VFKLIGPVL+KQD  EA+ NV  RLE IQ+EM KVEK +  K+     I + +  +Q  MQK AAE A
Sbjct:    6 QADAEMAAYRALQEEVTVLANQRQLYAQQQNENSMVKQELDLLAD---GSKVFKLIGPVLLKQDTAEAKTNVSKRLEFIQKEMEKVEKKLTAKEEEAVKIRQNIAAIQTQMQKNAAESA 121          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: D0NCV8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCV8_PHYIT)

HSP 1 Score: 100 bits (248), Expect = 1.320e-24
Identity = 61/125 (48.80%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   13 KAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEAV 387
            K +VD E+ +Y+ +Q+E+  L +QR  + QQANEN MVK+ELDLL+D+A+   V+KL+GPVL+KQD  EA++NV  RLE I  E+ KV   I  K+     I   +  MQ  MQK AAE A+ AV
Sbjct:    5 KEQVDTEMARYRALQDEVQVLATQRQTYAQQANENDMVKKELDLLDDEAK---VYKLVGPVLLKQDADEAKSNVNKRLEFINNELNKVNSKIEAKEKEAVGIRNNISNMQMEMQKRAAEAAKGAV 126          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: A0A8K1CR62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR62_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 1.730e-24
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   13 KAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEAV 387
            K +VD E+ +Y+ +QEE+  L +QR ++ QQA+EN MV+QELDLL DDA+   VFKLIGPVL+KQD  EA+ NV  RLE I  E+ K  K I +K+     I + + +MQ  MQK AA  A+  V
Sbjct:    4 KEQVDAEMARYRTLQEEVQVLATQRQQYAQQASENTMVQQELDLLGDDAK---VFKLIGPVLLKQDASEAKTNVKKRLEFINNELEKANKKIEQKEKDAVEIRKNIAQMQMEMQKQAAAAARSVV 125          
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Match: H3GRS3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS3_PHYRM)

HSP 1 Score: 99.4 bits (246), Expect = 2.660e-24
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   13 KAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLEDDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQVAQEAISEKVVEMQQAMQKAAAEGAQEAV 387
            K +V+ E+ +Y+ +Q+E+  L SQR  + QQANENGMVK EL+LL+D+A+   V+KL+GPVL+KQD  EA+ NV  RLE I  E+ KV   I  K+     I   +  MQ  MQK AAE A+ AV
Sbjct:    5 KDQVEAEMTRYRALQDEVQVLASQRQTYAQQANENGMVKTELELLDDEAR---VYKLVGPVLLKQDADEAKTNVNKRLEFINNELSKVNTKIENKEKEAIGIRSNISSMQMDMQKRAAEAAKSAV 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1906.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS7_ECTSI2.350e-3359.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y415_9STRA7.970e-3255.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZF83_9STRA1.650e-2652.46Prefoldin n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A1V9ZUD3_9STRA1.190e-2552.14Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A3F2RF90_9STRA4.660e-2549.60Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A5D6XI54_9STRA9.610e-2552.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W4H7L6_9STRA1.020e-2452.10Uncharacterized protein n=8 Tax=Saprolegniaceae Ta... [more]
D0NCV8_PHYIT1.320e-2448.80Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A8K1CR62_PYTOL1.730e-2449.60Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GRS3_PHYRM2.660e-2448.80Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1906contigP-wetherbeei_contig1906:4771..6005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLS7
Preferred namePFDN6
PFAMsPrefoldin_2
Model size387
Max annot lvl2759|Eukaryota
KEGG koko:K02989,ko:K04798
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0007021,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051082,GO:0051087,GO:0051131,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
Evalue3.86e-34
EggNOG OGsCOG1382@1|root,KOG3478@2759|Eukaryota
Descriptionchaperone-mediated protein complex assembly
Cds size387
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.7403948-CDS-P-wetherbeei_contig1906:4770..48311683186162.7403948-CDS-P-wetherbeei_contig1906:4770..4831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1906 4771..4831 +
1683186162.7517598-CDS-P-wetherbeei_contig1906:4912..50221683186162.7517598-CDS-P-wetherbeei_contig1906:4912..5022Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1906 4913..5022 +
1683186162.7602904-CDS-P-wetherbeei_contig1906:5789..60051683186162.7602904-CDS-P-wetherbeei_contig1906:5789..6005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1906 5790..6005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1906.4.1prot_P-wetherbeei_contig1906.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1906 4771..6005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1906.4.1

>prot_P-wetherbeei_contig1906.4.1 ID=prot_P-wetherbeei_contig1906.4.1|Name=mRNA_P-wetherbeei_contig1906.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MDSGKAEVDKEVKKYQDIQEEISALISQRNKFYQQANENGMVKQELDLLE
DDAQASEVFKLIGPVLVKQDVGEARANVGNRLELIQREMGKVEKLIAEKQ
VAQEAISEKVVEMQQAMQKAAAEGAQEAV
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mRNA from alignment at P-wetherbeei_contig1906:4771..6005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1906.4.1 ID=mRNA_P-wetherbeei_contig1906.4.1|Name=mRNA_P-wetherbeei_contig1906.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at P-wetherbeei_contig1906:4771..6005+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGCGGCAAAGCGGAGGTTGACAAAGAGGTCAAAAAGTACCAGGA TATCCAAGAAGGTGCACCGTAAATCGCTTTCCCTTTCTTCCTCGACCCGC TTTCGACGACCTTTTGATCTTTGCAAATTCTTTCCCGTACAGAGATCAGC GCGCTTATATCCCAGCGTAACAAGTTCTACCAACAAGCAAACGAGAATGG CATGGTGAAGCAGGAGCTGGATCTTTTGGAAGATGATGCTCAGGCAAGTG AGGTAGAACTTTCGCTCTTGGAGAATTCTGCCTTCTCGCCGTCCAAACTT CAGCTACTTCTGACTTGTAACTATAGCTTTTCTCTGCATGCGGTATGGAC TGTCCCGTCACTTTCCTTTCTTTTACTCGATCTTGACTTCCCTGCCTTCA AACTGTGTGCCTTGCCGATTTTTGCCTTCCGTAGCCTTTCGTTTTTACTC CTCTTCTTTAATCTCATCGCATTGGAAAGGAGTAGACATAGGTGTTGGTT TACCATTTGGCTCTGACGCTGAAGTATCGGTCGGTTTATTGTTCGGACGA CGGACGACGTGCCCCAAGCCACCCTCAGCCGGTTTCTGAACCTTACCGAT TTTGTATTTGCCGGGGGCGTGTACCCAGATTGCAGCTCGTTCAAATTTCA TTGCGAAAGCTGTGCATACTTCCTCGGGTGGCACTTGATTGGGGAGCGCG TCTGAGAAAACAAGCTCTTGGCCTGGAGCGTCTTTTTTGCGTTTTGAGCA TGGTTGAACCGTGGCGGTATTCAACCCTTTATATCGCGCGACCTATCAGG GCACCTTTTGGAGCTGTCAAGTCTTCCAACCTTCTGGCAATGATCGTGTT CCCAACTCTTCCCATTTTCGTTGCCGCAGCTACCAACCTGTGCCGAAATA CACCAAAACTGCTTTGATCGACGCCGCAGCCGCCGCCGCTCCTGCTTTCC GAACTCGCCGCTTCCCCCTTTGTTACTGCCGCACCCGCTATAACTGCCGT GACTGCCGTAACTGCCCAGGTTTTCAAGCTGATCGGGCCGGTGCTGGTTA AGCAGGACGTCGGAGAGGCGCGCGCCAACGTGGGAAACCGCCTGGAGCTG ATTCAGCGGGAGATGGGCAAAGTGGAAAAGCTGATAGCGGAGAAGCAGGT GGCGCAGGAAGCCATCAGCGAGAAGGTGGTCGAGATGCAGCAGGCGATGC AAAAGGCGGCGGCGGAGGGTGCGCAGGAGGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1906:4771..6005+

>mRNA_P-wetherbeei_contig1906.4.1 ID=mRNA_P-wetherbeei_contig1906.4.1|Name=mRNA_P-wetherbeei_contig1906.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1906:4771..6005+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGCGGCAAAGCGGAGGTTGACAAAGAGGTCAAAAAGTACCAGGA
TATCCAAGAAGAGATCAGCGCGCTTATATCCCAGCGTAACAAGTTCTACC
AACAAGCAAACGAGAATGGCATGGTGAAGCAGGAGCTGGATCTTTTGGAA
GATGATGCTCAGGCAAGTGAGGTTTTCAAGCTGATCGGGCCGGTGCTGGT
TAAGCAGGACGTCGGAGAGGCGCGCGCCAACGTGGGAAACCGCCTGGAGC
TGATTCAGCGGGAGATGGGCAAAGTGGAAAAGCTGATAGCGGAGAAGCAG
GTGGCGCAGGAAGCCATCAGCGAGAAGGTGGTCGAGATGCAGCAGGCGAT
GCAAAAGGCGGCGGCGGAGGGTGCGCAGGAGGCGGTG
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