mRNA_P-wetherbeei_contig1905.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1905.1.1
Unique NamemRNA_P-wetherbeei_contig1905.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: A0A226PHQ4_COLVI (Dynein light chain n=3 Tax=Neognathae TaxID=8825 RepID=A0A226PHQ4_COLVI)

HSP 1 Score: 179 bits (453), Expect = 9.940e-55
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    4 KSRRKAMAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            + RR  M++RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    2 RERRFTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 96
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: A0A2U9BTB9_SCOMX (Dynein light chain n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9BTB9_SCOMX)

HSP 1 Score: 180 bits (457), Expect = 1.240e-54
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 1 
Query:    1 RKSRRKAMAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            R++RR  M++RKAVIKNADMSEDMQQDAV+CA+QALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   52 RETRRATMSDRKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 147
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: W5MFS0_LEPOC (Dynein light chain n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MFS0_LEPOC)

HSP 1 Score: 179 bits (454), Expect = 1.930e-54
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:   13 RKAMAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            R AM++RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   37 RDAMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 128
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: T1FZC8_HELRO (Dynein light chain n=36 Tax=Eukaryota TaxID=2759 RepID=T1FZC8_HELRO)

HSP 1 Score: 177 bits (450), Expect = 2.290e-54
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:   22 MAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            M++RKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: G3NJ28_GASAC (Dynein light chain n=11 Tax=Percomorphaceae TaxID=1489872 RepID=G3NJ28_GASAC)

HSP 1 Score: 178 bits (451), Expect = 2.490e-54
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:   13 RKAMAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            R  M+ERKAVIKNADMSEDMQQDAV+CA+QALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   12 RATMSERKAVIKNADMSEDMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 103
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: A0A2C9K100_BIOGL (Dynein light chain n=4 Tax=Euthyneura TaxID=216307 RepID=A0A2C9K100_BIOGL)

HSP 1 Score: 177 bits (449), Expect = 3.240e-54
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:   22 MAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            M+ERKAVIKNADMSEDMQQDAVDCA+QALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSERKAVIKNADMSEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: M4BH12_HYAAE (Dynein light chain n=5 Tax=Eukaryota TaxID=2759 RepID=M4BH12_HYAAE)

HSP 1 Score: 177 bits (449), Expect = 3.240e-54
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:   22 MAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            MAERKAVIKNADM EDMQQDAVDCASQALEKYNIEKDIAA+IKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA+LLFKSG
Sbjct:    1 MAERKAVIKNADMHEDMQQDAVDCASQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: V8P1H8_OPHHA (Dynein light chain (Fragment) n=2 Tax=Episquamata TaxID=1329912 RepID=V8P1H8_OPHHA)

HSP 1 Score: 177 bits (450), Expect = 3.760e-54
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:   13 RKAMAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            R  M++RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   14 RSIMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 105
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: A0A553MVX5_9TELE (Dynein light chain n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553MVX5_9TELE)

HSP 1 Score: 178 bits (451), Expect = 4.120e-54
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:   13 RKAMAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            R+ M +RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:   28 RRIMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 119
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BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic n=192 Tax=Euteleostomi TaxID=117571 RepID=DYL2_HUMAN)

HSP 1 Score: 177 bits (448), Expect = 4.600e-54
Identity = 85/89 (95.51%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:   22 MAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 288
            M++RKAVIKNADMSEDMQQDAVDCA+QA+EKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG
Sbjct:    1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1905.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A226PHQ4_COLVI9.940e-5591.58Dynein light chain n=3 Tax=Neognathae TaxID=8825 R... [more]
A0A2U9BTB9_SCOMX1.240e-5491.67Dynein light chain n=1 Tax=Scophthalmus maximus Ta... [more]
W5MFS0_LEPOC1.930e-5494.57Dynein light chain n=1 Tax=Lepisosteus oculatus Ta... [more]
T1FZC8_HELRO2.290e-5496.63Dynein light chain n=36 Tax=Eukaryota TaxID=2759 R... [more]
G3NJ28_GASAC2.490e-5494.57Dynein light chain n=11 Tax=Percomorphaceae TaxID=... [more]
A0A2C9K100_BIOGL3.240e-5496.63Dynein light chain n=4 Tax=Euthyneura TaxID=216307... [more]
M4BH12_HYAAE3.240e-5496.63Dynein light chain n=5 Tax=Eukaryota TaxID=2759 Re... [more]
V8P1H8_OPHHA3.760e-5493.48Dynein light chain (Fragment) n=2 Tax=Episquamata ... [more]
A0A553MVX5_9TELE4.120e-5493.48Dynein light chain n=1 Tax=Danionella translucida ... [more]
DYL2_HUMAN4.600e-5495.51Dynein light chain 2, cytoplasmic n=192 Tax=Eutele... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1905contigP-wetherbeei_contig1905:3961..4820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog136037.KDR18512
Preferred nameDLC-D
PFAMsDynein_light
Model size661
Max annot lvl33208|Metazoa
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000132,GO:0000226,GO:0000278,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0005868,GO:0005875,GO:0006810,GO:0006914,GO:0006928,GO:0006996,GO:0006997,GO:0007010,GO:0007015,GO:0007017,GO:0007018,GO:0007049,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007292,GO:0007349,GO:0007399,GO:0007423,GO:0007431,GO:0007435,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008407,GO:0009056,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010623,GO:0010720,GO:0010970,GO:0012501,GO:0014041,GO:0014042,GO:0015629,GO:0015630,GO:0016043,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022416,GO:0022607,GO:0022612,GO:0030010,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030154,GO:0030286,GO:0030705,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032991,GO:0034453,GO:0034454,GO:0035070,GO:0035071,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035272,GO:0035295,GO:0040001,GO:0042623,GO:0042802,GO:0042803,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0044782,GO:0045505,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046907,GO:0046983,GO:0048102,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048515,GO:0048518,GO:0048522,GO:0048563,GO:0048569,GO:0048609,GO:0048646,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051017,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051293,GO:0051294,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051959,GO:0051960,GO:0051962,GO:0060033,GO:0060271,GO:0060284,GO:0060429,GO:0060562,GO:0061572,GO:0061919,GO:0065007,GO:0065009,GO:0070925,GO:0071840,GO:0072393,GO:0097435,GO:0099111,GO:0120031,GO:0120036,GO:1902494,GO:1902850,GO:1903047,GO:1903429,GO:1903431,GO:1904799,GO:1904801,GO:2000026,GO:2000574,GO:2000576,GO:2000580,GO:2000582
Exons2
Evalue6.33e-58
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota,3A3DU@33154|Opisthokonta,3BRE5@33208|Metazoa,3D83W@33213|Bilateria,41ZPZ@6656|Arthropoda,3SN5D@50557|Insecta
DescriptionIt is involved in the biological process described with microtubule-based process
Cds size270
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.5782137-UTR-P-wetherbeei_contig1905:3960..43301683186162.5782137-UTR-P-wetherbeei_contig1905:3960..4330Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1905 3961..4330 -
1683186162.6154864-UTR-P-wetherbeei_contig1905:4799..48201683186162.6154864-UTR-P-wetherbeei_contig1905:4799..4820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1905 4800..4820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.5910892-CDS-P-wetherbeei_contig1905:4330..44921683186162.5910892-CDS-P-wetherbeei_contig1905:4330..4492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1905 4331..4492 -
1683186162.6047115-CDS-P-wetherbeei_contig1905:4691..47991683186162.6047115-CDS-P-wetherbeei_contig1905:4691..4799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1905 4692..4799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1905.1.1prot_P-wetherbeei_contig1905.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1905 4331..4799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1905.1.1

>prot_P-wetherbeei_contig1905.1.1 ID=prot_P-wetherbeei_contig1905.1.1|Name=mRNA_P-wetherbeei_contig1905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MAERKAVIKNADMSEDMQQDAVDCASQALEKYNIEKDIAAYIKKEFDKKY
NPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG*
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mRNA from alignment at P-wetherbeei_contig1905:3961..4820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1905.1.1 ID=mRNA_P-wetherbeei_contig1905.1.1|Name=mRNA_P-wetherbeei_contig1905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=860bp|location=Sequence derived from alignment at P-wetherbeei_contig1905:3961..4820- (Phaeothamnion wetherbeei SAG_119_79)
CGAAAGTCGCGTCGGAAAGCCATGGCAGAACGCAAGGCGGTGATCAAGAA
TGCTGACATGTCGGAGGACATGCAGCAAGACGCAGTAGACTGCGCATCGC
AGGCCCTCGAAAAGTACAACATCGAAAAGGTAAGCATTCCTGATTTTTTA
CGGCATGGCTCTGCGCCGTCACGTTACATGCTTCTTGTTTTGTTAAGGCG
TGGCTCTTCGCTGTCACGTTACATGCTTCTCGAGCTGATTTCGAGTGAGA
GGATGCCTTTGCCCAAACGTATTCATTAAGAAAATGGCGCATCCCATTCT
CTTCCTCGGCGATTCGTGCTCACTGCAGGATATCGCCGCTTACATCAAGA
AGGAATTCGACAAAAAGTACAACCCGACATGGCATTGCATCGTCGGACGA
AACTTCGGATCGTACGTTACGCACGAGACGAAGCACTTTATCTACTTCTA
CCTCGGACAAGTCGCGATCTTGCTCTTCAAGTCCGGCTGACGTTCTCTCA
ACCACAAAAAGGCTGCGGAGAGAGGGTGCGGCGCTGCTTGCCTGCGGCCC
CTTCCCCTCCCTGCAGAAGCGCCTTTTTTCCTGCTTGACCCTTGGAAGAT
GGGTGCGAACATATAGGGAAGCGGCGCGCCGCCGGCAGTGCGGTTTGAGA
GGTGGCGGGCGGCGGCGGCGGCACGTAAAGCAGGCACGCGGTTGACCGCT
CGCTGCCGTGTCGTCGGTCGCACCGAGTGCGCAAGCGGGAAGGCAGCTGC
CTGGGCCGCCATGAACGGGGCGCGGCGGCAGGGAATCCGGCGGGGGGAGG
GGGGTGCGTTGGCCCGGCGGCGAATCCTTGTAGATAACAAAAACAACCAC
ATTATCCCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1905:3961..4820-

>mRNA_P-wetherbeei_contig1905.1.1 ID=mRNA_P-wetherbeei_contig1905.1.1|Name=mRNA_P-wetherbeei_contig1905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig1905:3961..4820- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGAACGCAAGGCGGTGATCAAGAATGCTGACATGTCGGAGGACAT
GCAGCAAGACGCAGTAGACTGCGCATCGCAGGCCCTCGAAAAGTACAACA
TCGAAAAGGATATCGCCGCTTACATCAAGAAGGAATTCGACAAAAAGTAC
AACCCGACATGGCATTGCATCGTCGGACGAAACTTCGGATCGTACGTTAC
GCACGAGACGAAGCACTTTATCTACTTCTACCTCGGACAAGTCGCGATCT
TGCTCTTCAAGTCCGGCTGA
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