mRNA_P-wetherbeei_contig19046.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19046.2.1
Unique NamemRNA_P-wetherbeei_contig19046.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A7X8XMB5_9BURK (SMC-Scp complex subunit ScpB n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMB5_9BURK)

HSP 1 Score: 146 bits (369), Expect = 5.510e-40
Identity = 84/164 (51.22%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    1 PSSQEERLAALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMP 492
            P     R+A LEA+LFAS   VR  +L EA GW   ML  DL+ L + L+ RG+EL R+AGA  L+T   TSP+VER + VQ+R++L+RAQL                    RGV  +R L QL DLRLIREVGRAELPGRP+ +GTT DFLRYF L+ LE +P
Sbjct:   82 PPPPGRRMAILEALLFASAVPVRTVDLQEACGWPLQMLNHDLDRLGRELAGRGLELHRVAGAWLLLTSAATSPWVERFLKVQSRKQLSRAQLETLAVVAYRQPVTRAEVDAYRGVRSDRSLRQLEDLRLIREVGRAELPGRPIQFGTTLDFLRYFSLDRLEDLP 245          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A355TST2_9BACT (SMC-Scp complex subunit ScpB n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TST2_9BACT)

HSP 1 Score: 139 bits (349), Expect = 2.270e-37
Identity = 73/165 (44.24%), Postives = 106/165 (64.24%), Query Frame = 1
Query:    7 SQEERLAALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDLT 501
            S E+RLA LE++LF + G ++  ++ EATGW   ++E+DL  LA S +LRG+EL +  GA RL T + T+P+VER +  +++RRL++AQL                    RG   +R L QL DL LI+ VGR+ +PG P+ YGTT DFLRYFGLN+L  +P+++
Sbjct:   30 SPEQRLAILESILFVASGPLKVDDIHEATGWPAILIEQDLLSLADSYALRGLELTQSGGAWRLTTASFTAPWVERFLRSESKRRLSKAQLETLAVIAYRQPVTRAEIESYRGARSDRPLSQLEDLNLIKCVGRSSVPGHPIQYGTTVDFLRYFGLNSLASLPEIS 194          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A7Z9PRG8_9BACT (SMC-Scp complex subunit ScpB n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PRG8_9BACT)

HSP 1 Score: 129 bits (325), Expect = 2.190e-34
Identity = 67/157 (42.68%), Postives = 100/157 (63.69%), Query Frame = 1
Query:   28 ALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDL 498
            A+EAMLFASP  +   ELAEA GW    +E  +  L + L  R +E++++AGA  L+T++  +P+VER++ VQ ++RLT+ QL                    RG++ +R L QL DL L+ +VGRAELPGRP L+GTT  FL +FG+++L+ +P+L
Sbjct:   11 AIEAMLFASPTPIPAEELAEAGGWSKREVEDYVERLRRQLKDRSLEVRKVAGAYSLLTKSEVAPFVERILQVQNKQRLTKVQLEILSIVAYKQPITRPQLEEARGINGDRTLAQLIDLELVCQVGRAELPGRPFLFGTTDLFLEHFGMSSLDDLPEL 167          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A1F8ST65_9CHLR (SMC-Scp complex subunit ScpB n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_55_16 TaxID=1797669 RepID=A0A1F8ST65_9CHLR)

HSP 1 Score: 118 bits (296), Expect = 1.310e-30
Identity = 68/168 (40.48%), Postives = 96/168 (57.14%), Query Frame = 1
Query:    1 PSSQEERLAALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDLTE 504
            P S ++  A LEA+LF +PG V  ++LA A       +E  L  L + L  RG+ LQR AG ++L T    +P VER +G++    L+RA L                   +RGV+ + VL  L    L+++VGRAE PGRP+LY TT DFL++FGLN+LE++P L E
Sbjct:    7 PQSPQDLKAPLEALLFVAPGPVTAAQLAAALEITTAEVEAGLAQLGEELQGRGLRLQRHAGQLQLTTAPEMAPLVERFLGLEATSHLSRAALEALAIVAYQQPATRPQLDAIRGVNSDGVLKSLLSKGLVQDVGRAEGPGRPILYATTSDFLQHFGLNSLEELPPLEE 174          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A0P6Z239_9CHLR (Transcriptional regulator n=1 Tax=Levilinea saccharolytica TaxID=229921 RepID=A0A0P6Z239_9CHLR)

HSP 1 Score: 115 bits (287), Expect = 3.560e-29
Identity = 64/156 (41.03%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   25 AALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMP 492
            A LE MLF SPG+V   +L EA G KP  +E  L+ L   L+ RG+ LQ  AG V+L T    +P +ER +G++   RL+RA L                   +RGV+ + V+  L    L++EVGRAE PGRP+LY TT +FL++FGL+++ ++P
Sbjct:   15 ACLEGMLFVSPGSVTVVQLGEALGLKPQEVEEGLHQLEVLLAARGLRLQWHAGRVQLTTAPELAPLIERYLGLEATARLSRAALETLAIIAYRQPITRPGVDAIRGVNSDGVMKSLLSKGLLQEVGRAEGPGRPILYSTTSEFLQHFGLSSIAELP 170          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A7C3KMT1_9CHLR (SMC-Scp complex subunit ScpB n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3KMT1_9CHLR)

HSP 1 Score: 112 bits (281), Expect = 3.060e-28
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 1
Query:   31 LEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDLTE 504
            LEAMLF +   V  ++LA A    P ++ER LN+L  SLS RG+ LQR AG V+L T    +  +ER +G++    L+RA L                   +RGV+ + ++  L    LI E GRA+ PGRP+LY TTP+FL++FGLN++ +MP L +
Sbjct:   22 LEAMLFVAAEPVMTAQLATALDVAPSVVERGLNELDASLSSRGLRLQRHAGRVQLTTAPELAELIERFLGLEATSHLSRAALETLAIIAYQQPVTRPQIDSIRGVNSDSMMKSLLSKGLILESGRADGPGRPILYSTTPEFLQHFGLNSILEMPPLAK 179          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A1F8QRJ6_9CHLR (SMC-Scp complex subunit ScpB n=1 Tax=Chloroflexi bacterium RBG_16_57_11 TaxID=1797651 RepID=A0A1F8QRJ6_9CHLR)

HSP 1 Score: 111 bits (277), Expect = 7.180e-28
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query:   22 LAALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDL----AQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDL 498
            L  LEA+LF +PGAV  ++LA A    P  +ER L++L     +S   RG+ LQR  G V+L+T    +P VER +G++   RL+RA L                   +RGV+ + VL  L    L++EVGRAE PGRP+LY  TP+ L+YFGL +L  +P L
Sbjct:    7 LTVLEALLFVAPGAVSPAQLAAAMEVPPADVERSLDELDHLYQKSTPPRGLRLQRYRGRVQLITLPAAAPAVERFLGLEASSRLSRAALETLAIILYRQPVTRPQIDLVRGVNSDYVLKSLLLKGLVQEVGRAEAPGRPILYSATPECLQYFGLASLSDLPPL 169          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A7C4UTX8_9CHLR (SMC-Scp complex subunit ScpB n=2 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4UTX8_9CHLR)

HSP 1 Score: 111 bits (278), Expect = 8.630e-28
Identity = 65/160 (40.62%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   25 AALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDLTE 504
            A LEA+LF S   V  ++LA A    P ++ER LN+L  SL+ RG++LQR AG V+L T    +  VER +G++    L+RA L                   +RGV+ + +L  L    LI E GRA+ PGRP+LY TTP+FL++FGL+++ +MP L +
Sbjct:   20 AKLEALLFVSGEPVPAAQLAAALDVAPSVIERGLNELDASLASRGLKLQRNAGRVQLTTAPQLAELVERFLGLEATAHLSRAALETLAIIAYQQPVTRPQIDSIRGVNSDSMLKSLLHKNLILESGRADGPGRPILYSTTPEFLQHFGLSSILEMPPLAK 179          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A7C1ZJH9_9BACT (SMC-Scp complex subunit ScpB n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1ZJH9_9BACT)

HSP 1 Score: 111 bits (277), Expect = 1.020e-27
Identity = 68/165 (41.21%), Postives = 94/165 (56.97%), Query Frame = 1
Query:   22 LAALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDL----AQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDLTE 504
            +A LEA+LF +PGAV  S+LA A       +E  L +L    A+  + RG+ +QR  G V+L T    +P VER +G+    RL+RA L                   +RGV+ + VL  L    LI +VGRAE PGRP+LY TT DFL++FGLN+L ++P L+E
Sbjct:   14 IARLEALLFVAPGAVPPSQLAAALDSTKSEIEAGLAELEAYYAEPNTCRGLRIQRHHGRVQLTTTPEVAPLVERFLGLHATTRLSRAALETLAIVAYQEPVTRPRVDAIRGVNSDGVLRNLLSKGLIEDVGRAETPGRPILYCTTEDFLQHFGLNSLTELPPLSE 178          
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Match: A0A2H5YNE3_9BACT (Segregation and condensation protein B n=1 Tax=bacterium HR25 TaxID=2035420 RepID=A0A2H5YNE3_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.100e-27
Identity = 66/157 (42.04%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   31 LEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLSLRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLXXXXXXXXXXXXXXXXXXXLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPDFLRYFGLNNLEQMPDLT 501
            LE +L+ +   V  S LA      P  +E +L  LAQ L  RG+ +QR   AV++VT    +PYVER +GV    RL+RA L                   +RGV CER +  L    LI EVGRA+ PGRP LYGTT  FL +FGL   E +P LT
Sbjct:   12 LEGILYLADAPVSLSRLASVAEAPPEAVEAELEALAQELRGRGVRIQRSGDAVQMVTAPELAPYVERFLGVAQDDRLSRAALETLAIIAYKQPITRSDIEAIRGVGCERAIASLKARGLITEVGRADRPGRPYLYGTTFRFLEHFGLERPEDLPPLT 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19046.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XMB5_9BURK5.510e-4051.22SMC-Scp complex subunit ScpB n=1 Tax=Burkholderial... [more]
A0A355TST2_9BACT2.270e-3744.24SMC-Scp complex subunit ScpB n=1 Tax=bacterium UBP... [more]
A0A7Z9PRG8_9BACT2.190e-3442.68SMC-Scp complex subunit ScpB n=1 Tax=Phycisphaeral... [more]
A0A1F8ST65_9CHLR1.310e-3040.48SMC-Scp complex subunit ScpB n=1 Tax=Chloroflexi b... [more]
A0A0P6Z239_9CHLR3.560e-2941.03Transcriptional regulator n=1 Tax=Levilinea saccha... [more]
A0A7C3KMT1_9CHLR3.060e-2840.51SMC-Scp complex subunit ScpB n=1 Tax=Anaerolineae ... [more]
A0A1F8QRJ6_9CHLR7.180e-2841.10SMC-Scp complex subunit ScpB n=1 Tax=Chloroflexi b... [more]
A0A7C4UTX8_9CHLR8.630e-2840.63SMC-Scp complex subunit ScpB n=2 Tax=Anaerolineae ... [more]
A0A7C1ZJH9_9BACT1.020e-2741.21SMC-Scp complex subunit ScpB n=1 Tax=bacterium Tax... [more]
A0A2H5YNE3_9BACT1.100e-2742.04Segregation and condensation protein B n=1 Tax=bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19046contigP-wetherbeei_contig19046:507..1010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog926569.ANT_11700
Preferred namescpB
PFAMsSMC_ScpB
Model size504
Max annot lvl200795|Chloroflexi
KEGG koko:K06024
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.65e-26
EggNOG OGsCOG1386@1|root,COG1386@2|Bacteria,2G6V6@200795|Chloroflexi
DescriptionParticipates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Cds size504
COG categoryD
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.509421-CDS-P-wetherbeei_contig19046:506..10101683186162.509421-CDS-P-wetherbeei_contig19046:506..1010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19046 507..1010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19046.2.1prot_P-wetherbeei_contig19046.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19046 507..1010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19046.2.1

>prot_P-wetherbeei_contig19046.2.1 ID=prot_P-wetherbeei_contig19046.2.1|Name=mRNA_P-wetherbeei_contig19046.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
PSSQEERLAALEAMLFASPGAVRFSELAEATGWKPGMLERDLNDLAQSLS
LRGIELQRIAGAVRLVTRNTTSPYVERLIGVQTRRRLTRAQLETLAVVAY
RQPATRAQAESLRGVSCERVLGQLCDLRLIREVGRAELPGRPLLYGTTPD
FLRYFGLNNLEQMPDLTE
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mRNA from alignment at P-wetherbeei_contig19046:507..1010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19046.2.1 ID=mRNA_P-wetherbeei_contig19046.2.1|Name=mRNA_P-wetherbeei_contig19046.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig19046:507..1010+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAGCAGTCAAGAAGAACGCCTGGCCGCTCTGGAAGCTATGCTCTTTGC CTCTCCGGGAGCCGTGCGCTTCAGCGAACTGGCCGAAGCCACCGGTTGGA AGCCCGGTATGCTCGAACGCGATCTCAACGATCTGGCCCAGTCCCTCAGC CTGCGGGGTATCGAGCTGCAGCGCATTGCAGGTGCCGTGCGCCTGGTCAC GCGCAACACGACTTCGCCCTACGTGGAGCGCCTTATCGGCGTGCAGACGC GGCGTCGTCTCACGCGTGCCCAGCTCGAAACGCTGGCTGTGGTCGCTTAT CGCCAACCGGCCACCCGTGCCCAGGCCGAATCCCTGCGTGGCGTAAGCTG CGAACGTGTCCTGGGTCAGCTTTGCGATCTCCGCCTGATCCGCGAAGTCG GACGCGCCGAGCTGCCCGGTCGTCCCTTACTATATGGCACGACCCCCGAC TTCTTGCGCTACTTCGGACTCAACAACCTCGAGCAGATGCCGGATTTGAC CGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19046:507..1010+

>mRNA_P-wetherbeei_contig19046.2.1 ID=mRNA_P-wetherbeei_contig19046.2.1|Name=mRNA_P-wetherbeei_contig19046.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig19046:507..1010+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAGCAGTCAAGAAGAACGCCTGGCCGCTCTGGAAGCTATGCTCTTTGC
CTCTCCGGGAGCCGTGCGCTTCAGCGAACTGGCCGAAGCCACCGGTTGGA
AGCCCGGTATGCTCGAACGCGATCTCAACGATCTGGCCCAGTCCCTCAGC
CTGCGGGGTATCGAGCTGCAGCGCATTGCAGGTGCCGTGCGCCTGGTCAC
GCGCAACACGACTTCGCCCTACGTGGAGCGCCTTATCGGCGTGCAGACGC
GGCGTCGTCTCACGCGTGCCCAGCTCGAAACGCTGGCTGTGGTCGCTTAT
CGCCAACCGGCCACCCGTGCCCAGGCCGAATCCCTGCGTGGCGTAAGCTG
CGAACGTGTCCTGGGTCAGCTTTGCGATCTCCGCCTGATCCGCGAAGTCG
GACGCGCCGAGCTGCCCGGTCGTCCCTTACTATATGGCACGACCCCCGAC
TTCTTGCGCTACTTCGGACTCAACAACCTCGAGCAGATGCCGGATTTGAC
CGAA
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