mRNA_P-wetherbeei_contig19046.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19046.1.1
Unique NamemRNA_P-wetherbeei_contig19046.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A7X8XME5_9BURK (Segregation/condensation protein A n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XME5_9BURK)

HSP 1 Score: 87.4 bits (215), Expect = 9.820e-19
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 PEWLELDVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVI 303
            P+  EL+VSVEALAAA  RL++S RAPR P+ ++K+ +SVPER  +++    R+    F  L+GA+ +RS VVVTFLALLEL RR +V + Q+    D+ +
Sbjct:  148 PDEPELEVSVEALAAAMRRLESSPRAPRDPVAVEKMVLSVPERIRELWSLFIRQPLTCFRDLLGARPTRSLVVVTFLALLELARRRKVTLRQQTTVGDIEV 248          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A355TUS1_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TUS1_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 6.890e-12
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   13 ELDVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQ 276
            EL VS+EALA+ + RL  + R   +PI L +V +SVPER  Q+ + ++ +    F  LVG    RSYVVVTFLALL++V+  ++   Q
Sbjct:  158 ELQVSLEALASTFQRLSKAGRNVNRPITLNRVSVSVPERIEQLSQQIKAKHVYSFWGLVGKNYDRSYVVVTFLALLQMVKEGKLHADQ 245          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A2V6UNM8_9BACT (Chromosome segregation protein ScpA n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6UNM8_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 7.570e-10
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIE 306
            D+SV+ LA A+ RL T  R  R P  ++    SV ER  +I   LR     LFS +VG +R R+ +VVTFLALLELVR  R R  Q     D+VIE
Sbjct:  213 DLSVDLLARAFERLVTEQRR-RAPRAVEPEPPSVLERMAEIVSLLRSTWSLLFSTVVGTERERAELVVTFLALLELVRLGRARAQQTELFGDIVIE 307          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A2V6X8F3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6X8F3_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 1.690e-9
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIE 306
            D+SV+ LA A  RL    R  R P  ++    SV ER  +I   LR     LFS +VG +R R+ +VVTFLALLELVR  R R  Q     D+VIE
Sbjct:   64 DLSVDLLARALARLVAEQRR-RAPRAVEPEPPSVLERMAEIVSLLRSTWSLLFSTVVGPERERAELVVTFLALLELVRLGRARAQQTELFGDIVIE 158          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A2V7EFW9_9BACT (Segregation/condensation protein A n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A2V7EFW9_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 4.000e-9
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIEIRQET 321
            D+SV  L  A  RL  S +A R+P E++   +S+ ER  +I   LR     LFS L G +R R  +VVT LA+LELVR  R+R  Q     D+VIE R+++
Sbjct:  150 DLSVHQLERALKRL-ISEQARRRPREVQPEPMSLLERMTEILAVLRDTWSLLFSSLTGGERRRPEIVVTLLAVLELVRLGRIRTQQTELFGDIVIERREDS 249          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A2V7E0T4_9BACT (Segregation/condensation protein A n=7 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A2V7E0T4_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.070e-8
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIEIRQE 318
            D+SV  L  A  RL  + +A R+P E++   +S+ ER  +I   LR     LFS L G +R R  +VVT LA+LELVR  R+R  Q     D++IE R++
Sbjct:  151 DLSVHQLEKALKRL-INEQARRKPREVQPEPMSLLERMTEILTVLRDTWSLLFSSLTGGERRRPEIVVTMLAVLELVRLGRIRTQQTELFGDIIIERRED 249          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A2V6NUJ0_9BACT (Chromosome segregation protein ScpA n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6NUJ0_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.460e-8
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIE 306
            D+SV  L  A  R+  + R  + P E++    SV ER  +I   LR     LFS LVGA+R R+ +VVT LALLELVR  R R  Q     D+VIE
Sbjct:  147 DLSVHLLGRAMTRVIEAQRR-QAPREIEPNPPSVLERMAEIVALLRSTWSLLFSALVGAERRRAELVVTLLALLELVRLGRARAQQTEMFGDIVIE 241          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A1Q7EDW4_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7EDW4_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 3.760e-8
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIEIRQE 318
            D+S+  L  A  RL    +A R+P E++   +S+ ER  +I   LR     LFS L G +R RS VVVT LA+LELVR   +R  Q     D+VIE R E
Sbjct:  149 DLSLHLLERALRRL-IDEQARRKPREIEPEPMSLLERMAEILAVLRDTWSLLFSSLTGTERVRSEVVVTLLAVLELVRLGNIRAQQSELFGDIVIERRAE 247          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A2V7F0M5_9BACT (Uncharacterized protein n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7F0M5_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 4.630e-8
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIE 306
            D+SV+ LA A  RL    R  R P  ++    SV ER  +I   LR     LFS L G +R RS +VVT LA+LELVR+ R++  Q     ++VIE
Sbjct:  142 DLSVDWLARAMTRLIDEQRRAR-PRSVEPNPPSVIERMTEILSVLRDTWSLLFSSLTGGERKRSEIVVTLLAVLELVRQGRIKAQQTELFGEIVIE 236          
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Match: A0A0T6A567_9BACT (Chromosome segregation and condensation protein ScpA, segregation and condensation protein A n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A0T6A567_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 8.930e-8
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   19 DVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEWLRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLVIE 306
            D+S+  L  A+ RL    R  + P E++   +SV ER  +I   LR     LFS +VG++R+RS +VVT LALLELVR  + R  Q     ++VIE
Sbjct:  147 DLSIHLLERAFRRLLEEARG-QAPREVEPNPLSVLERMGEILSLLRHTWSLLFSSMVGSERARSELVVTLLALLELVRLGQARARQTELFGEIVIE 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19046.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X8XME5_9BURK9.820e-1948.51Segregation/condensation protein A n=1 Tax=Burkhol... [more]
A0A355TUS1_9BACT6.890e-1244.32Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A2V6UNM8_9BACT7.570e-1046.88Chromosome segregation protein ScpA n=2 Tax=Candid... [more]
A0A2V6X8F3_9BACT1.690e-945.83Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A2V7EFW9_9BACT4.000e-942.57Segregation/condensation protein A n=2 Tax=unclass... [more]
A0A2V7E0T4_9BACT2.070e-841.00Segregation/condensation protein A n=7 Tax=unclass... [more]
A0A2V6NUJ0_9BACT2.460e-844.79Chromosome segregation protein ScpA n=1 Tax=Candid... [more]
A0A1Q7EDW4_9BACT3.760e-843.00Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A2V7F0M5_9BACT4.630e-842.71Uncharacterized protein n=2 Tax=Candidatus Rokubac... [more]
A0A0T6A567_9BACT8.930e-841.67Chromosome segregation and condensation protein Sc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19046contigP-wetherbeei_contig19046:22..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1304880.JAGB01000001_gene123
Preferred namescpA
PFAMsSMC_ScpA
Model size327
Max annot lvl186801|Clostridia
KEGG koko:K05896
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.87e-07
EggNOG OGsCOG1354@1|root,COG1354@2|Bacteria,1TRW3@1239|Firmicutes,249VW@186801|Clostridia
DescriptionParticipates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Cds size327
COG categoryD
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.4754272-CDS-P-wetherbeei_contig19046:21..3481683186162.4754272-CDS-P-wetherbeei_contig19046:21..348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19046 22..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19046.1.1prot_P-wetherbeei_contig19046.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19046 22..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19046.1.1

>prot_P-wetherbeei_contig19046.1.1 ID=prot_P-wetherbeei_contig19046.1.1|Name=mRNA_P-wetherbeei_contig19046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
PEWLELDVSVEALAAAWVRLDTSVRAPRQPIELKKVQISVPERAVQIFEW
LRRRSQGLFSQLVGAQRSRSYVVVTFLALLELVRRSRVRVSQENWQSDLV
IEIRQETAD
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mRNA from alignment at P-wetherbeei_contig19046:22..348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19046.1.1 ID=mRNA_P-wetherbeei_contig19046.1.1|Name=mRNA_P-wetherbeei_contig19046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig19046:22..348+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGTGGCTGGAACTCGATGTATCGGTGGAAGCCCTGGCAGCCGCCTG GGTCCGTCTAGACACCTCGGTGCGCGCGCCGCGCCAGCCCATCGAGCTCA AGAAAGTCCAGATATCTGTGCCCGAGAGGGCCGTGCAAATTTTCGAGTGG CTGCGCCGTCGCAGCCAGGGTCTATTTTCCCAGCTCGTGGGTGCCCAGCG CAGCCGCAGTTACGTAGTGGTCACTTTTCTGGCCCTACTCGAGCTGGTTC GCCGCAGCCGGGTGCGCGTGTCTCAAGAGAACTGGCAGTCCGATCTCGTC ATCGAGATCCGCCAGGAGACCGCCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19046:22..348+

>mRNA_P-wetherbeei_contig19046.1.1 ID=mRNA_P-wetherbeei_contig19046.1.1|Name=mRNA_P-wetherbeei_contig19046.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig19046:22..348+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGTGGCTGGAACTCGATGTATCGGTGGAAGCCCTGGCAGCCGCCTG
GGTCCGTCTAGACACCTCGGTGCGCGCGCCGCGCCAGCCCATCGAGCTCA
AGAAAGTCCAGATATCTGTGCCCGAGAGGGCCGTGCAAATTTTCGAGTGG
CTGCGCCGTCGCAGCCAGGGTCTATTTTCCCAGCTCGTGGGTGCCCAGCG
CAGCCGCAGTTACGTAGTGGTCACTTTTCTGGCCCTACTCGAGCTGGTTC
GCCGCAGCCGGGTGCGCGTGTCTCAAGAGAACTGGCAGTCCGATCTCGTC
ATCGAGATCCGCCAGGAGACCGCCGAC
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