mRNA_P-wetherbeei_contig19033.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19033.1.1
Unique NamemRNA_P-wetherbeei_contig19033.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C5TQN5_9HYPH (OmpA family protein n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TQN5_9HYPH)

HSP 1 Score: 119 bits (299), Expect = 1.620e-27
Identity = 86/193 (44.56%), Postives = 111/193 (57.51%), Query Frame = 3
Query:  417 VGIGAQTFFTENVGLVGSVDGSLLAAAF--SESGTPNGS-GAWRLVPVVGGEVGVQYRFADTPSLAVTGGARI---DALFNAAFDGG---MGRGSSVAVGPFIRLTYNLSGPR-GVAPAPXXXXTAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            +G+      T+ V L G VD S L +    S S  P G+  + RLV  +G  +G+    +    L V  G ++   D + +A   GG    GR   +  GPF+RL YN   P  GVA  P      PP   RS++VFFDFDRS +T TAV TI+QAA+ A+AGR TR++VTGH DR+G D YNMALSLRRANA
Sbjct:  123 IGVDGSLRLTDIVSLFGGVDTSFLYSKTKGSTSVPPGGALNSKRLVWDIGARIGIDVEVSPLVHLGV--GYKLEWFDGVNHALAQGGGGPKGRSGELVHGPFVRLAYNWGAPPPGVAAPP----VTPPGQVRSFIVFFDFDRSNLTPTAVNTIKQAADQAKAGRTTRIDVTGHTDRAGTDAYNMALSLRRANA 309          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PH16_9HYPH (OmpA family protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PH16_9HYPH)

HSP 1 Score: 118 bits (295), Expect = 5.160e-27
Identity = 84/194 (43.30%), Postives = 112/194 (57.73%), Query Frame = 3
Query:  417 VGIGAQTFFTENVGLVGSVDGSLLAAAFS--ESGTPNGS-GAWRLVPVVGGEVGVQYRFADTPSLAVTGGARI---DALFNAAFDGG---MGRGSSVAVGPFIRLTYNLSGPRGVAPAPXXXXTAPPSSG--RSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            +G+ A    T+ V L G +D + L        S  P GS  + RL+  +GG +G+    A    L V  G ++   D + +A   GG    GR   +  GPF+RL YN   P   APA      APP  G  RS++VFFDFD+S +T TAV TI+QA++ A++GR TR++VTGH DR+G D YNMALSLRRANA
Sbjct:  114 IGVDASLRLTDIVSLFGGIDTAFLYGKTKGKTSVPPGGSLNSERLIWDIGGRIGIDVELAPLWHLGV--GYKVEWFDGVNHALSQGGGGPKGRSGELVHGPFVRLAYNWGAPPPGAPA-----VAPPVPGATRSFIVFFDFDKSNLTPTAVQTIKQASDQAKSGRTTRIDVTGHTDRAGTDAYNMALSLRRANA 300          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PPY6_9HYPH (OmpA family protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PPY6_9HYPH)

HSP 1 Score: 90.9 bits (224), Expect = 2.030e-17
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  696 IRLTYNLSGPRGV-APAPXXXXTAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            + L Y    P  V AP P       P++ +SY+VFFDFDR+ +T+ A+ TI+QAA  A+AG  T L+VTGHADRSGGD YNMALS+RRANA
Sbjct:  156 LTLGYKFGQPARVEAPPPAPV----PAARQSYVVFFDFDRADITQPAMQTIQQAAASAKAGNRTSLSVTGHADRSGGDTYNMALSMRRANA 242          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PGB7_9HYPH (OmpA family protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C8PGB7_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 3.170e-16
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  786 YMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            Y+VFFDFDR+ +T  A+TTI+QAA+ A+AG  TR+ VTGH DRSGGD YNMALSLRRANA
Sbjct:  197 YIVFFDFDRATLTAQAMTTIKQAADAAKAGNKTRIGVTGHTDRSGGDAYNMALSLRRANA 256          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PAU8_9HYPH (OmpA family protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PAU8_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 3.170e-16
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  558 GEVGVQYRFADTPSLAVTGGARIDALFNAAFDGGMGRGSSVAVGPFIRLTYNLSGPRGVAPAPXXXXTAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            G VG +YRF +   +      R D  F  AF  G    +    G  I + Y    P+     P    + PP++  S++VFFDFDR+ +T  A+ TI+QAA  A++G  TR+ VTGH DRSG D YNMALSLRRANA
Sbjct:  134 GLVGGRYRFDNGMFI------RTDLKFQNAFLSGKDLHN---FGGTISIGYKFGPPQPAVAPP----SPPPATSPSFIVFFDFDRANLTAQAMATIKQAAASAKSGNRTRVGVTGHTDRSGSDGYNMALSLRRANA 256          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PGE8_9HYPH (OmpA family protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PGE8_9HYPH)

HSP 1 Score: 86.7 bits (213), Expect = 8.190e-16
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  786 YMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            Y+VFFDFDR+ +T  A+TTIRQAA  A+AG   R+ VTGH DRSGGD YNMALSLRRANA
Sbjct:  197 YIVFFDFDRATLTAQAMTTIRQAAEAAKAGNKARIGVTGHTDRSGGDAYNMALSLRRANA 256          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C5TAD1_9HYPH (OmpA family protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TAD1_9HYPH)

HSP 1 Score: 84.0 bits (206), Expect = 7.430e-15
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 3
Query:  735 APAPXXXXTAPPSSGRS-YMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            APAP XXX    S+  + Y+VFFDFDR+ +T  A  TI+QAA+ A++G  TR+ VTGHADR+GGD YNMALSLRRANA
Sbjct:  179 APAPAXXXXXXXSTPTTQYIVFFDFDRATLTAQAQATIKQAADAAKSGNRTRVGVTGHADRAGGDAYNMALSLRRANA 256          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A3A9JVD0_9PROT (OmpA family protein n=3 Tax=Roseomonas TaxID=125216 RepID=A0A3A9JVD0_9PROT)

HSP 1 Score: 82.8 bits (203), Expect = 3.780e-14
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  693 FIRLTYNLSGPRGVAPAPXXXXT--APPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            F+ L Y  + PR VAPAP       A P+  R+Y+VFFDFDR+ +T+ A   I +AA +A   +ATR+ V GHADRSG   YN  LS RRA+A
Sbjct:  236 FVGLRYAFNAPRPVAPAPVVEVAPAAAPAPARTYLVFFDFDRADLTDRARQIIAEAAQNANRVQATRIEVAGHADRSGSPQYNQRLSQRRADA 328          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: UPI001A96C1DF (OmpA family protein n=1 Tax=Roseomonas haemaphysalidis TaxID=2768162 RepID=UPI001A96C1DF)

HSP 1 Score: 82.4 bits (202), Expect = 5.940e-14
Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  558 GEVGVQYRFADTPSLAVTGGARIDALFNAAFDGGMGR--GSSVAVGPF-----------IRLTYNLSGPRGVAPAPXXXX--TAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            G  G+ +     P L++T   R      + +DG +    G++VA G F           I + Y L  P  VAPAP  XX   A P+  R+Y+VFFDFDR+ +T+ A   I +AA +A   + TR+ V GHADRSG   YN  LS RRA+A
Sbjct:  201 GIAGLAFPITSVPGLSITAEYRYTGALQSKYDGDVRTPTGATVATGKFEVDQAHNHSALIGVRYALYTPAAVAPAPVAXXXXAAAPAPTRTYLVFFDFDRADLTDRARQIIAEAAQNAGRVQTTRIEVAGHADRSGSPQYNQRLSQRRADA 351          
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C5T7A0_9HYPH (OmpA family protein n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5T7A0_9HYPH)

HSP 1 Score: 81.6 bits (200), Expect = 6.450e-14
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  780 RSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
            +SY+VFFDFDR+ +T+ A+ T++QAA  A++G  T ++VTGHADRSG D YNMALS+RRANA
Sbjct:  221 QSYVVFFDFDRATLTQQALQTVQQAAAAAKSGNKTSVSVTGHADRSGSDAYNMALSMRRANA 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C5TQN5_9HYPH1.620e-2744.56OmpA family protein n=2 Tax=Reyranella sp. CPCC 10... [more]
A0A5C8PH16_9HYPH5.160e-2743.30OmpA family protein n=2 Tax=Vineibacter terrae Tax... [more]
A0A5C8PPY6_9HYPH2.030e-1756.04OmpA family protein n=2 Tax=Vineibacter terrae Tax... [more]
A0A5C8PGB7_9HYPH3.170e-1671.67OmpA family protein n=2 Tax=Hyphomicrobiales TaxID... [more]
A0A5C8PAU8_9HYPH3.170e-1643.38OmpA family protein n=1 Tax=Vineibacter terrae Tax... [more]
A0A5C8PGE8_9HYPH8.190e-1671.67OmpA family protein n=2 Tax=Vineibacter terrae Tax... [more]
A0A5C5TAD1_9HYPH7.430e-1562.82OmpA family protein n=1 Tax=Reyranella sp. CPCC 10... [more]
A0A3A9JVD0_9PROT3.780e-1449.46OmpA family protein n=3 Tax=Roseomonas TaxID=12521... [more]
UPI001A96C1DF5.940e-1439.07OmpA family protein n=1 Tax=Roseomonas haemaphysal... [more]
A0A5C5T7A0_9HYPH6.450e-1462.90OmpA family protein n=2 Tax=Reyranella sp. CPCC 10... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19033contigP-wetherbeei_contig19033:1..965 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size967
Hectar predicted targeting categorymitochondrion
Exons1
Cds size705
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.131587-UTR-P-wetherbeei_contig19033:0..2601683186162.131587-UTR-P-wetherbeei_contig19033:0..260Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19033 1..260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186162.1415722-CDS-P-wetherbeei_contig19033:260..9651683186162.1415722-CDS-P-wetherbeei_contig19033:260..965Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19033 261..965 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19033.1.1prot_P-wetherbeei_contig19033.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19033 261..965 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19033.1.1

>prot_P-wetherbeei_contig19033.1.1 ID=prot_P-wetherbeei_contig19033.1.1|Name=mRNA_P-wetherbeei_contig19033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
RQRRSCPGSRAARLLRRRDRPVGVEYRRSHQCRRPDRTAAQRPRLPRCRR
PEDGLPLGFRPGRRRAVVPQRFGHQRRHPIGYLGALSVRRRRSRLQHEHG
QRYRRPSVRRRQGPALQPGRHQFRRRRQRPSQCLGHRPPSVLARRPSLPR
MSASSAASTVRCWPPPSVNPARPTAVAPGAWCPWSAARSACNTASPIRRR
SPSLAVRESMRCSMPPSTAAWAAAVRWRSARSFG*
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mRNA from alignment at P-wetherbeei_contig19033:1..965-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19033.1.1 ID=mRNA_P-wetherbeei_contig19033.1.1|Name=mRNA_P-wetherbeei_contig19033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=965bp|location=Sequence derived from alignment at P-wetherbeei_contig19033:1..965- (Phaeothamnion wetherbeei SAG_119_79)
CGCCAGCGCCGGTCATGCCCAGGTTCCCGAGCAGCCCGGCTTCTACGCCG GCGCGACCGGCCTGTGGGAGTGGAATATCGGCGATCGCACCAGTGCCGGC GGCCTGACCGCACGGCCGCGCAGCGGCCCCGGCTTCCGCGGTGTCGTCGG CCAGAAGATGGACTCCCCTTGGGATTTCGCCCTGGGCGGCGGCGCGCAGT GGTTCCGCAACGCTTCGGCCACCAACGGCGTCACCCGATTGGATACCTCG GCGCGCTATCAGTACGTCGACGTCGAAGCCGGCTACAGCATGAACATGGG CAGCGATACCGCCGTCCGAGTGTTCGGCGGCGTCAGGGGCCTGCACTTCA ACCAGGACGCCATCAATTTCGGCGCCGGCGTCAACGCCCATCGCAATGTC TGGGGCATCGGCCCCCGTCGGTATTGGCGCGCAGACCTTCTTTACCGAGA ATGTCGGCCTCGTCGGCAGCGTCGACGGTTCGCTGCTGGCCGCCGCCTTC AGTGAATCCGGCACGCCCAACGGCAGTGGCGCCTGGCGCCTGGTGCCCGT GGTCGGCGGCGAGGTCGGCGTGCAATACCGCTTCGCCGATACGCCGTCGC TCGCCGTCACTGGCGGTGCGCGAATCGATGCGCTGTTCAATGCCGCCTTC GACGGCGGCATGGGCCGCGGCAGTTCGGTGGCGGTCGGCCCGTTCATTCG GCTGACCTACAACCTCTCCGGCCCGCGCGGTGTCGCGCCGGCTCCGGCGC CGGCCCCTACCGCACCGCCATCGAGCGGCCGCAGCTACATGGTGTTCTTC GACTTCGACCGCTCGATCGTCACCGAAACGGCGGTGACCACGATCCGCCA GGCCGCCAATGACGCCAGGGCCGGCCGCGCCACGCGGCTGAACGTCACCG GTCATGCCGACCGCTCGGGCGGAGACGACTACAACATGGCGCTGTCGCTG CGCCGCGCCAACGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19033:1..965-

>mRNA_P-wetherbeei_contig19033.1.1 ID=mRNA_P-wetherbeei_contig19033.1.1|Name=mRNA_P-wetherbeei_contig19033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig19033:1..965- (Phaeothamnion wetherbeei SAG_119_79)
CGCCAGCGCCGGTCATGCCCAGGTTCCCGAGCAGCCCGGCTTCTACGCCG
GCGCGACCGGCCTGTGGGAGTGGAATATCGGCGATCGCACCAGTGCCGGC
GGCCTGACCGCACGGCCGCGCAGCGGCCCCGGCTTCCGCGGTGTCGTCGG
CCAGAAGATGGACTCCCCTTGGGATTTCGCCCTGGGCGGCGGCGCGCAGT
GGTTCCGCAACGCTTCGGCCACCAACGGCGTCACCCGATTGGATACCTCG
GCGCGCTATCAGTACGTCGACGTCGAAGCCGGCTACAGCATGAACATGGG
CAGCGATACCGCCGTCCGAGTGTTCGGCGGCGTCAGGGGCCTGCACTTCA
ACCAGGACGCCATCAATTTCGGCGCCGGCGTCAACGCCCATCGCAATGTC
TGGGGCATCGGCCCCCGTCGGTATTGGCGCGCAGACCTTCTTTACCGAGA
ATGTCGGCCTCGTCGGCAGCGTCGACGGTTCGCTGCTGGCCGCCGCCTTC
AGTGAATCCGGCACGCCCAACGGCAGTGGCGCCTGGCGCCTGGTGCCCGT
GGTCGGCGGCGAGGTCGGCGTGCAATACCGCTTCGCCGATACGCCGTCGC
TCGCCGTCACTGGCGGTGCGCGAATCGATGCGCTGTTCAATGCCGCCTTC
GACGGCGGCATGGGCCGCGGCAGTTCGGTGGCGGTCGGCCCGTTCATTCG
GCTGA
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