mRNA_P-wetherbeei_contig19033.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C5TQN5_9HYPH (OmpA family protein n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TQN5_9HYPH) HSP 1 Score: 119 bits (299), Expect = 1.620e-27 Identity = 86/193 (44.56%), Postives = 111/193 (57.51%), Query Frame = 3
Query: 417 VGIGAQTFFTENVGLVGSVDGSLLAAAF--SESGTPNGS-GAWRLVPVVGGEVGVQYRFADTPSLAVTGGARI---DALFNAAFDGG---MGRGSSVAVGPFIRLTYNLSGPR-GVAPAPXXXXTAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
+G+ T+ V L G VD S L + S S P G+ + RLV +G +G+ + L V G ++ D + +A GG GR + GPF+RL YN P GVA P PP RS++VFFDFDRS +T TAV TI+QAA+ A+AGR TR++VTGH DR+G D YNMALSLRRANA
Sbjct: 123 IGVDGSLRLTDIVSLFGGVDTSFLYSKTKGSTSVPPGGALNSKRLVWDIGARIGIDVEVSPLVHLGV--GYKLEWFDGVNHALAQGGGGPKGRSGELVHGPFVRLAYNWGAPPPGVAAPP----VTPPGQVRSFIVFFDFDRSNLTPTAVNTIKQAADQAKAGRTTRIDVTGHTDRAGTDAYNMALSLRRANA 309
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PH16_9HYPH (OmpA family protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PH16_9HYPH) HSP 1 Score: 118 bits (295), Expect = 5.160e-27 Identity = 84/194 (43.30%), Postives = 112/194 (57.73%), Query Frame = 3
Query: 417 VGIGAQTFFTENVGLVGSVDGSLLAAAFS--ESGTPNGS-GAWRLVPVVGGEVGVQYRFADTPSLAVTGGARI---DALFNAAFDGG---MGRGSSVAVGPFIRLTYNLSGPRGVAPAPXXXXTAPPSSG--RSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
+G+ A T+ V L G +D + L S P GS + RL+ +GG +G+ A L V G ++ D + +A GG GR + GPF+RL YN P APA APP G RS++VFFDFD+S +T TAV TI+QA++ A++GR TR++VTGH DR+G D YNMALSLRRANA
Sbjct: 114 IGVDASLRLTDIVSLFGGIDTAFLYGKTKGKTSVPPGGSLNSERLIWDIGGRIGIDVELAPLWHLGV--GYKVEWFDGVNHALSQGGGGPKGRSGELVHGPFVRLAYNWGAPPPGAPA-----VAPPVPGATRSFIVFFDFDKSNLTPTAVQTIKQASDQAKSGRTTRIDVTGHTDRAGTDAYNMALSLRRANA 300
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PPY6_9HYPH (OmpA family protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PPY6_9HYPH) HSP 1 Score: 90.9 bits (224), Expect = 2.030e-17 Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 3
Query: 696 IRLTYNLSGPRGV-APAPXXXXTAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
+ L Y P V AP P P++ +SY+VFFDFDR+ +T+ A+ TI+QAA A+AG T L+VTGHADRSGGD YNMALS+RRANA
Sbjct: 156 LTLGYKFGQPARVEAPPPAPV----PAARQSYVVFFDFDRADITQPAMQTIQQAAASAKAGNRTSLSVTGHADRSGGDTYNMALSMRRANA 242
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PGB7_9HYPH (OmpA family protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C8PGB7_9HYPH) HSP 1 Score: 87.8 bits (216), Expect = 3.170e-16 Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 3
Query: 786 YMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
Y+VFFDFDR+ +T A+TTI+QAA+ A+AG TR+ VTGH DRSGGD YNMALSLRRANA
Sbjct: 197 YIVFFDFDRATLTAQAMTTIKQAADAAKAGNKTRIGVTGHTDRSGGDAYNMALSLRRANA 256
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PAU8_9HYPH (OmpA family protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PAU8_9HYPH) HSP 1 Score: 87.8 bits (216), Expect = 3.170e-16 Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 3
Query: 558 GEVGVQYRFADTPSLAVTGGARIDALFNAAFDGGMGRGSSVAVGPFIRLTYNLSGPRGVAPAPXXXXTAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
G VG +YRF + + R D F AF G + G I + Y P+ P + PP++ S++VFFDFDR+ +T A+ TI+QAA A++G TR+ VTGH DRSG D YNMALSLRRANA
Sbjct: 134 GLVGGRYRFDNGMFI------RTDLKFQNAFLSGKDLHN---FGGTISIGYKFGPPQPAVAPP----SPPPATSPSFIVFFDFDRANLTAQAMATIKQAAASAKSGNRTRVGVTGHTDRSGSDGYNMALSLRRANA 256
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C8PGE8_9HYPH (OmpA family protein n=2 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PGE8_9HYPH) HSP 1 Score: 86.7 bits (213), Expect = 8.190e-16 Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 3
Query: 786 YMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
Y+VFFDFDR+ +T A+TTIRQAA A+AG R+ VTGH DRSGGD YNMALSLRRANA
Sbjct: 197 YIVFFDFDRATLTAQAMTTIRQAAEAAKAGNKARIGVTGHTDRSGGDAYNMALSLRRANA 256
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C5TAD1_9HYPH (OmpA family protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5TAD1_9HYPH) HSP 1 Score: 84.0 bits (206), Expect = 7.430e-15 Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 3
Query: 735 APAPXXXXTAPPSSGRS-YMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
APAP XXX S+ + Y+VFFDFDR+ +T A TI+QAA+ A++G TR+ VTGHADR+GGD YNMALSLRRANA
Sbjct: 179 APAPAXXXXXXXSTPTTQYIVFFDFDRATLTAQAQATIKQAADAAKSGNRTRVGVTGHADRAGGDAYNMALSLRRANA 256
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A3A9JVD0_9PROT (OmpA family protein n=3 Tax=Roseomonas TaxID=125216 RepID=A0A3A9JVD0_9PROT) HSP 1 Score: 82.8 bits (203), Expect = 3.780e-14 Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 3
Query: 693 FIRLTYNLSGPRGVAPAPXXXXT--APPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
F+ L Y + PR VAPAP A P+ R+Y+VFFDFDR+ +T+ A I +AA +A +ATR+ V GHADRSG YN LS RRA+A
Sbjct: 236 FVGLRYAFNAPRPVAPAPVVEVAPAAAPAPARTYLVFFDFDRADLTDRARQIIAEAAQNANRVQATRIEVAGHADRSGSPQYNQRLSQRRADA 328
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: UPI001A96C1DF (OmpA family protein n=1 Tax=Roseomonas haemaphysalidis TaxID=2768162 RepID=UPI001A96C1DF) HSP 1 Score: 82.4 bits (202), Expect = 5.940e-14 Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 3
Query: 558 GEVGVQYRFADTPSLAVTGGARIDALFNAAFDGGMGR--GSSVAVGPF-----------IRLTYNLSGPRGVAPAPXXXX--TAPPSSGRSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
G G+ + P L++T R + +DG + G++VA G F I + Y L P VAPAP XX A P+ R+Y+VFFDFDR+ +T+ A I +AA +A + TR+ V GHADRSG YN LS RRA+A
Sbjct: 201 GIAGLAFPITSVPGLSITAEYRYTGALQSKYDGDVRTPTGATVATGKFEVDQAHNHSALIGVRYALYTPAAVAPAPVAXXXXAAAPAPTRTYLVFFDFDRADLTDRARQIIAEAAQNAGRVQTTRIEVAGHADRSGSPQYNQRLSQRRADA 351
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Match: A0A5C5T7A0_9HYPH (OmpA family protein n=2 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5T7A0_9HYPH) HSP 1 Score: 81.6 bits (200), Expect = 6.450e-14 Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 3
Query: 780 RSYMVFFDFDRSIVTETAVTTIRQAANDARAGRATRLNVTGHADRSGGDDYNMALSLRRANA 965
+SY+VFFDFDR+ +T+ A+ T++QAA A++G T ++VTGHADRSG D YNMALS+RRANA
Sbjct: 221 QSYVVFFDFDRATLTQQALQTVQQAAAAAKSGNKTSVSVTGHADRSGSDAYNMALSMRRANA 282 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19033.1.1 >prot_P-wetherbeei_contig19033.1.1 ID=prot_P-wetherbeei_contig19033.1.1|Name=mRNA_P-wetherbeei_contig19033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp RQRRSCPGSRAARLLRRRDRPVGVEYRRSHQCRRPDRTAAQRPRLPRCRRback to top mRNA from alignment at P-wetherbeei_contig19033:1..965- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19033.1.1 ID=mRNA_P-wetherbeei_contig19033.1.1|Name=mRNA_P-wetherbeei_contig19033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=965bp|location=Sequence derived from alignment at P-wetherbeei_contig19033:1..965- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19033:1..965- >mRNA_P-wetherbeei_contig19033.1.1 ID=mRNA_P-wetherbeei_contig19033.1.1|Name=mRNA_P-wetherbeei_contig19033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig19033:1..965- (Phaeothamnion wetherbeei SAG_119_79)back to top |