mRNA_P-wetherbeei_contig19025.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19025.1.1
Unique NamemRNA_P-wetherbeei_contig19025.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A836CFW6_9STRA (Galactosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.810e-34
Identity = 64/88 (72.73%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQKQGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHRNLFVLHDVDLLPSPELG 264
            VAIIVPFRD H EQ+R +HL +FVP MT FM  QGV+FHI+I+EQ S DGRKFNRGKLLNIG+DIA+N+  N  VLHDVDLLPS ELG
Sbjct:   89 VAIIVPFRDQHAEQRRAEHLARFVPAMTQFMLAQGVEFHIFIVEQ-SEDGRKFNRGKLLNIGYDIAKNDGYNTLVLHDVDLLPSAELG 175          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A1E7FY82_9STRA (Nucleotide-diphospho-sugar transferase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FY82_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.230e-31
Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQK------QGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHRNL--------FVLHDVDLLPSPELG 264
            VAIIVPFRDLH EQ+R +HL KF+PHM TF+Q       +  DFHIYI+EQ S+D RKFNRGKLLNIGFD+AR   +NL        F+ HDVDLLPS  LG
Sbjct:    1 VAIIVPFRDLHVEQKRSEHLSKFIPHMITFLQDLQKNQHRIYDFHIYIVEQ-SDDQRKFNRGKLLNIGFDLARKNFQNLKGGNKHDVFIFHDVDLLPSSVLG 101          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A482SYK5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYK5_9ARCH)

HSP 1 Score: 114 bits (285), Expect = 7.920e-30
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQKQGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHRNLFVLHDVDLLPSPEL 261
            +AI+VP+RDLHK+Q+R + L +FVP +T F+ K GV F IY+IEQ SNDGRKFNRGKLLN+GF +A  +H  +F+ HDVDL+PS +L
Sbjct:   42 IAIVVPYRDLHKDQKRHEQLRRFVPSITQFLHKGGVPFKIYVIEQ-SNDGRKFNRGKLLNVGFTMAVQDHCTVFIFHDVDLIPSDDL 127          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A7S4M9S3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M9S3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.510e-29
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQK---QGV--DFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHR---NLFVLHDVDLLPSPELG 264
            VAIIVP+RDLH  Q R +HL +FVPHM  F++K   +G+  D+H+YI+EQ S+DGRKFNRGKLLNIGFD+AR + R   N+F+ HDVDLLP  +LG
Sbjct:   87 VAIIVPYRDLHAAQNRARHLRQFVPHMLQFLKKLKRRGLVSDYHVYIVEQ-SDDGRKFNRGKLLNIGFDLARRDRRLGHNVFIFHDVDLLPGDDLG 181          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A448ZN40_9STRA (WW domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN40_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.950e-29
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFM------QKQGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARN------EHRNLFVLHDVDLLPSPELG 264
            VAIIVPFRDLHKEQ+R +HL KF+PHM  F+      +++  D+H+YI+EQ S+DGRKFNRGKLLNIGFDIAR       +  ++F+ HDVDLLPS +L 
Sbjct:   97 VAIIVPFRDLHKEQKRSEHLSKFIPHMIRFLGNLKTTERRISDYHVYIVEQ-SDDGRKFNRGKLLNIGFDIARKHKGRNGQKHDVFIFHDVDLLPSKQLN 195          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A7S0GA09_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GA09_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.260e-29
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQK-----QGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNE--HRN-LFVLHDVDLLPSPELG 264
            VAIIVPFRDLH EQ R +HL KF+PHMT+F+ K     +  DFHIYII+Q S+DGRKFNRGKLLNIGFDIA+    H++ +F+ HDVDLLP  +LG
Sbjct:  141 VAIIVPFRDLHPEQNRSKHLAKFLPHMTSFLSKLVKAGKCQDFHIYIIDQ-SDDGRKFNRGKLLNIGFDIAKKSKMHKHDVFIFHDVDLLPGDDLG 235          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A7S4HUL3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUL3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.350e-28
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQK---QGV--DFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHR---NLFVLHDVDLLPSPELG 264
            VAIIVP+RDLH  Q R +HL +FVPHM  F++K   +G+  D+H+YI+EQ S+DGRKFNRGKLLNIGFD+AR + R   N+F+ HDVDLLP  +LG
Sbjct:   87 VAIIVPYRDLHAAQNRARHLRQFVPHMLQFLKKLKRRGLVSDYHVYIVEQ-SDDGRKFNRGKLLNIGFDLARRDRRLGHNVFIFHDVDLLPGDDLG 181          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: A0A7R9W3S0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3S0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.790e-28
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQKQGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHRNLFVLHDVDLLPSPEL 261
            VAI+VP+RD H EQQR +HL +FVP+M  +M +  + F+IYI+EQ S DGRKFNRGKLLN+G+ IA+    + FV HDVDLLP  EL
Sbjct:    8 VAIVVPYRDEHAEQQRSKHLAQFVPYMLQYMSRTNLPFYIYIVEQ-SKDGRKFNRGKLLNVGYRIAKERRCSAFVFHDVDLLPDDEL 93          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: B8C3S1_THAPS (Beta-1,4-galactosyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3S1_THAPS)

HSP 1 Score: 107 bits (268), Expect = 7.270e-28
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQKQGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIA--RNE----HRNLFVLHDVDLLPSPELG 264
            VAIIVP+RDLH  Q R +HL++F+PHM  F+ K   D+HIYIIEQ SND RKFNRGKLLNIGFD A  R+E      N+F+ HDVDLLP   +G
Sbjct:    1 VAIIVPYRDLHVAQNRAKHLNQFIPHMKQFLGKLIEDYHIYIIEQ-SNDERKFNRGKLLNIGFDYAIKRSEKHPPRHNVFIFHDVDLLPQAGVG 93          
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Match: G4YY24_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY24_PHYSP)

HSP 1 Score: 110 bits (276), Expect = 1.230e-27
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    1 VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQK----QGVDFHIYIIEQQSNDGRKFNRGKLLNIGFDIARNEHRNLFVLHDVDLLPSPELG 264
            VA++VPFRD H  QQR+ HLD+FVP+MT F+Q+    +   FHI+I+EQ S DGRKFNRGKLLN GFD+ARN++ ++F+ HDVDLLP  +L 
Sbjct:    7 VAVLVPFRDNHPAQQRRAHLDEFVPYMTEFLQRHCASKSASFHIFILEQ-SMDGRKFNRGKLLNAGFDMARNDY-DVFIFHDVDLLPGDDLA 96          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19025.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFW6_9STRA8.810e-3472.73Galactosyl transferase n=1 Tax=Tribonema minus Tax... [more]
A0A1E7FY82_9STRA4.230e-3161.76Nucleotide-diphospho-sugar transferase (Fragment) ... [more]
A0A482SYK5_9ARCH7.920e-3060.92Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4M9S3_9STRA2.510e-2961.46Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A448ZN40_9STRA4.950e-2959.00WW domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]
A0A7S0GA09_9STRA5.260e-2964.58Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4HUL3_9STRA1.350e-2861.46Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9W3S0_9STRA3.790e-2859.77Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B8C3S1_THAPS7.270e-2861.70Beta-1,4-galactosyltransferase (Fragment) n=1 Tax=... [more]
G4YY24_PHYSP1.230e-2759.78Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19025contigP-wetherbeei_contig19025:282..840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog36331.EPrPI00000023248
PFAMsGlyco_transf_7C,Glyco_transf_7N,WW
Model size276
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00049
KEGG koko:K07553
KEGG ReactionR03354,R06276
KEGG Pathwayko00600,ko01100,map00600,map01100
KEGG ModuleM00066
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.68e-30
EggNOG OGsKOG3916@1|root,KOG3916@2759|Eukaryota
EC2.4.1.274
DescriptionN-acetyllactosamine synthase activity
Cds size276
COG categoryS
CAZyGT7
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.9106417-CDS-P-wetherbeei_contig19025:281..4221683186161.9106417-CDS-P-wetherbeei_contig19025:281..422Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19025 282..422 -
1683186161.9233048-CDS-P-wetherbeei_contig19025:705..8401683186161.9233048-CDS-P-wetherbeei_contig19025:705..840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19025 706..840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19025.1.1prot_P-wetherbeei_contig19025.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19025 282..840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19025.1.1

>prot_P-wetherbeei_contig19025.1.1 ID=prot_P-wetherbeei_contig19025.1.1|Name=mRNA_P-wetherbeei_contig19025.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
VAIIVPFRDLHKEQQRKQHLDKFVPHMTTFMQKQGVDFHIYIIEQQSNDG
RKFNRGKLLNIGFDIARNEHRNLFVLHDVDLLPSPELGYVV*
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mRNA from alignment at P-wetherbeei_contig19025:282..840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19025.1.1 ID=mRNA_P-wetherbeei_contig19025.1.1|Name=mRNA_P-wetherbeei_contig19025.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=559bp|location=Sequence derived from alignment at P-wetherbeei_contig19025:282..840- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCATCATCGTACCGTTCCGAGACCTCCACAAGGAGCAGCAACGGAA GCAGCACCTCGACAAGTTTGTGCCCCACATGACCACCTTCATGCAGAAGC AGGGAGTCGACTTTCACATCTACATCATCGAGCAGGTAAGAGCTCTTGAG AGACGCGTGGAAAAGAGGGGAGGCGGAACCTGACTAGGTCCCTTTCGATT GTTTGCTCCCTCTGTCTCCTCATTGTGCGTGCCTCGCCCTTGCATCTGCT ACAAATTCGACCCCGACGCCTCATGCCTTCTCGGTTTTGTCCCCGCATTC CCGCCATCCCGCCGTGCAATCGACCCGCCGGATCCCGCCTGCTGCCCGCC TTTCAAACCTGCCGAAATTGCTTGCCGGCTCCGTGCGCCCCGCCCGCCCG GTACGCACGCGGGAAGAGCAGAGCAACGACGGGCGAAAATTTAACCGGGG AAAGCTCCTCAACATCGGCTTCGACATCGCGCGCAACGAGCACCGCAACC TCTTTGTGCTGCACGACGTCGACCTCCTGCCGTCCCCCGAGCTCGGGTAT GTAGTGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19025:282..840-

>mRNA_P-wetherbeei_contig19025.1.1 ID=mRNA_P-wetherbeei_contig19025.1.1|Name=mRNA_P-wetherbeei_contig19025.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig19025:282..840- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCATCATCGTACCGTTCCGAGACCTCCACAAGGAGCAGCAACGGAA
GCAGCACCTCGACAAGTTTGTGCCCCACATGACCACCTTCATGCAGAAGC
AGGGAGTCGACTTTCACATCTACATCATCGAGCAGCAGAGCAACGACGGG
CGAAAATTTAACCGGGGAAAGCTCCTCAACATCGGCTTCGACATCGCGCG
CAACGAGCACCGCAACCTCTTTGTGCTGCACGACGTCGACCTCCTGCCGT
CCCCCGAGCTCGGGTATGTAGTGTAA
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