mRNA_P-wetherbeei_contig19015.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19015.1.1
Unique NamemRNA_P-wetherbeei_contig19015.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 217 bits (553), Expect = 3.130e-63
Identity = 144/433 (33.26%), Postives = 207/433 (47.81%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADA--------------------------------------------------------------STTRVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLR 1113
            W+ AC++E  SL KN  +  V  P+ RK + S+ VFK K    G I +YK R+V K FLQ  GVDF+     APVA       ++++AA     LHQMDV+TA+LN LLEEE YM+ P+GF    A   + V +L  +LY L+QS   WN TI EF  + GF    +  C +V+R   +++ +VLY+DDL+L  N    L   K  +  RF + DLGE  + LG+   RDD +G V + +  ++  +  ++GM+   P + P D                                                               +  RVLRYL  TPT G+ +                  +   EL+ YSDA+ AG +E+ RS  G +F+L GG + + S+ Q  V   + E+EYMAL +A QEA  L+
Sbjct:    9 WKEACESEFESLCKNKTWELVPLPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFE--ETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVD--AKYPDHVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRF----------------AGSGDGELIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMALSEATQEAVWLK 421          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 219 bits (558), Expect = 3.290e-63
Identity = 148/430 (34.42%), Postives = 209/430 (48.60%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADASTT---------------------------------------------------------RVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLRTL 1119
            W+ A D E  SL +N  +  V  PKDRK + SR VFK K ++ GE+ +YK R+V K + Q  GVD+D     +PV   +    +++ A      +HQMDV TA+LN  LEEE YME PDG+ K G     LV +L  S+Y L+QS   W+ T +E   + GF  + S PC FVR R   + I+ +Y+DDL+L   S   +  LK  +  ++++KD+GE +++LGI   +D    +V L + HYI  +  +YGM+ A+P   PADA+                                                           R+LRYL GT  L L Y R                  S  L+ +SDA+ AG  +  RS  G +FLL GG V++ S+ Q+ V   T E+EY+AL  AAQE   L  L
Sbjct:   13 WKEAADLEYESLLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYD--ETFSPVVRFSSIRTLLSFAVQNNLHVHQMDVVTAFLNGHLEEEIYMEQPDGYIKPGQ--EHLVCKLKKSIYGLKQSPRCWSKTFTESMKDIGFNQSTSDPCVFVRAR-QELEILAVYVDDLILITESLESMTELKVALKKKYKMKDMGELSYILGISVIQDKTNNSVYLHQKHYIEAVLQKYGMDKANPVTTPADANVKLQKDDGVSNPVNPGTYQSIVGSLLYAAMATRPDIAQAVSAVSKFNAKPNTAHMTAVKRILRYLKGTINLALKYQRSE----------------SETLLGFSDADWAGDQDDRRSTTGNIFLLGGGAVSWLSKKQNTVALSTAEAEYVALSQAAQECTWLTRL 421          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 224 bits (570), Expect = 1.360e-61
Identity = 142/433 (32.79%), Postives = 212/433 (48.96%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADA--------------------------------------------------------------STTRVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLR 1113
            W+ ACD+E  SL KN  +  V  PK RK +  R VF+ K N AGE+ ++K R+V K F Q  G+D+D     APVA       V++LAA  G +LHQMDV+TA+LN +L+E+ YM  PDG+        + V +L  SLY L+QS   WN TI +F ++ GF    S  C +++R G  ++ + LY+DDL+L  +S+  L+  K  +  RF + DLGE  + LG+    D  +G V + +  +++ + T++GM+ + P + P D                                                               +  RVLRYL  TPT GL + R+                 S+ +  YSDA+ AG +ES RS  G  F++ GG +++ S+ Q  V   + E+EYMAL +A QE   L+
Sbjct:  671 WKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEVERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSRED----------------SVGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLK 1083          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: A0A8K1FHK1_PYTOL (Uncharacterized protein n=3 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHK1_PYTOL)

HSP 1 Score: 216 bits (549), Expect = 1.030e-58
Identity = 142/434 (32.72%), Postives = 208/434 (47.93%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADA--------------------------------------------------------------STTRVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLRT 1116
            W  ACD+E  SL KN  +  V  P+ RK + S+ VFK K    G I +YK R+V K FLQ  GVDF+     APVA       +++LAA     LHQMDV+TA+LN LL+EE YM+ PDG+            +L  +LY L+QS   WN TI EF  + GF       C +V+R  S+ + +V+Y+DDL+L  N++  L   K  +  RF + DLGE  + LG+   RDD +G V + +  +++ + T++GM+   P + P D                                                               +  RVLRYL  TP  G+ +                + ++  EL+ YSDA+ AG +E+ RS  G + +L GG +++ S+ Q  V   + E+EYMAL +A QEA  L++
Sbjct:  879 WMEACDSEFESLRKNETWELVPLPQGRKAISSKWVFKVKETAEGLIERYKARLVAKGFLQKYGVDFE--ETFAPVAKFTSIRIILSLAAQYKLVLHQMDVKTAFLNGLLDEEIYMKQPDGYIDPKYPNHAC--KLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCNMDHCVYVKRNDSATMFVVIYVDDLILACNNKDLLAATKRALSERFEMSDLGELKYCLGMEVKRDDKSGDVSMRQTKFVQSVLTKFGMQDCKPVKTPQDPGLKLTKSMCEGGCKHDETMKDVPYRNAVGALMYLMVGTRPDLAASVGTLSQFAADPCPTHWQALKRVLRYLQATPMHGICF----------------SGSSDGELIGYSDADWAGDIETRRSTSGYVSVLNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKS 1292          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: H3GQK5_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQK5_PHYRM)

HSP 1 Score: 209 bits (533), Expect = 5.730e-57
Identity = 138/417 (33.09%), Postives = 214/417 (51.32%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADAST--TRVL--------RYLIGTP---TLGLLYY----RQPAAATATAMVTP---------------------ATAAASLE--------LVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLR 1113
            W+ ACD+E  SL KN  +  V  PK RK +  R VF+ K N AGEI ++K R+V K F Q  G+D+D   + APVA       V++LAA    +LHQMDV+TA+LN +L+E+ YM  PDG+        + V +L  SLY L+QS   WN TI +F ++ GF    S  C +++R G  I+ + LY+DDL+L  +S+  L   K  +  RF + D+G+  + LG+   +D   G + + +  + +D+  ++ M+ ++P + P D     T+ +          ++  P    +G L Y     +P  A A  +++                       T    +E        L  YSDA+ AG +ES RS  G  F++ GG +++ S+ Q  V   + E+EYMAL +A QEA  L+
Sbjct:  434 WKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--EIFAPVAKFTSIRIVLSLAAKYSLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDIIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMMDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCHDGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLK 846          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM)

HSP 1 Score: 209 bits (533), Expect = 5.900e-57
Identity = 136/413 (32.93%), Postives = 213/413 (51.57%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADAST--TRVL--------RYLIGTP---TLGLLYY----RQPAAATATAMVTP-----------------------------ATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEA 1101
            W+ ACD+E  SL KN  +  V  PK RK +  R VF+ K N AGEI ++K R+V K F Q  G+D+D     APVA       V++LAA  G +LHQMDV+TA+LN +L+E+ YM  PDG+        + V +L  SLY L+QS   WN TI +F ++ GF    S  C +++R G  ++ + LY+DDL+L  +S+  L   K  +  RF + D+G+  + LG+   +D   G + + +  + +D+  ++ M+ ++P + P D     T+ +          ++  P    +G L Y     +P  A A  +++                              + A+ +  L  YSDA+ AG +ES RS  G  F++ GG +++ S+ Q  V   + E+EYMAL +A QEA
Sbjct:  433 WKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCIYLKRDGQDMIFVALYVDDLVLASSSDKMLLDTKQALSHRFEMTDMGQLKYFLGMEIEQDVVTGKMSMRQTKFAKDILQKFSMDKSNPVKTPQDPGLKLTKAMCEGGCKHDETMVNVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIESQASCNDGLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEA 841          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 194 bits (492), Expect = 1.130e-55
Identity = 101/264 (38.26%), Postives = 154/264 (58.33%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPAD 792
            W+ ACD+E  SL KN  +  V  PK RK +  R VF+ K N AGEI ++K R+V K F Q   +D+D     APVA       V++LAA  G +LHQMDV+TA+LN +L+E+ YM  PDG+        + V +L  SLY L+QS   WN TI +F ++ GF    S  C +++R G  ++ + LY+DDL+L  +++  L+  K  +  RF + DLGE  + LG+    D  +G V + +  +++ + T++GM+ + P + P D
Sbjct:   39 WKEACDSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYD--ETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDH--PDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQD 298          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: A0A2Z7AJV0_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AJV0_9LAMI)

HSP 1 Score: 199 bits (507), Expect = 1.720e-55
Identity = 136/429 (31.70%), Postives = 218/429 (50.82%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGME--------------------------------------------------------AASPTRLPADASTTRVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLRTL 1119
            W+ A DAEI+S+ KN  +S +  P   K +  + ++KTK N  GE+ K+K R+VVK + Q  GVD+    + APVA ++    ++A+AA +GW ++Q+DV++A+L+  LEE+ Y+E P G+    +G  E+V++LH +LY L+Q+   W + I  +FI+ GF  + +    F++R G + LI+ +Y+DDLL TGN+   L+  K  +   F + DLG+  + LGI   ++   G V + +  Y  +M  R+GM+                                                         ASPT+L   A   RVLRYL GT   G+ Y     +                +LV Y+D++ AG ++  +S  G  F+++GG VA+SSR Q +VT  T E+EY+A    A +A  +R +
Sbjct:   32 WRKAMDAEISSIEKNQTWSLISLPDGAKAIGVKWIYKTKLNELGEVDKFKARLVVKGYTQEYGVDYS--EVFAPVARMDTVRMILAVAAHKGWGVYQLDVKSAFLHGKLEEDIYVEQPQGYEV--SGKKEMVYKLHKALYGLKQAPRAWFSRIEAYFIKEGFSNSPNEQTLFIKRFGGNFLIVSVYVDDLLFTGNNVRLLEEFKCSMKREFDMTDLGKMRYFLGIEVVQNPEKG-VFICQRKYAAEMIDRFGMQHHNPVYNPIAPGQKIGRDEAGEKIDSTLYKQMVGSLMYLTASRPDLMFVVCLLSRFMASPTQLHL-AVAKRVLRYLKGTLEYGIWYKHGTMS----------------DLVAYTDSDYAGDMDDSKSTSGYAFMMSGGAVAWSSRKQPIVTLSTTEAEYVAAVACACQAIWMRRI 438          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM)

HSP 1 Score: 200 bits (509), Expect = 2.490e-55
Identity = 135/435 (31.03%), Postives = 208/435 (47.82%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGMEAASPTRLPADA--------------------------------------------------------------STTRVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQEAEQLRTL 1119
            W+ ACD+E+ SL KN  ++ V  PK RK +  R VF+ K N +GEI ++K R+V K F Q  G+D+D     APVA       +++LAA     +HQMDV+TA+LN LL+E+ YM  PDG+        + V +L  SLY L+QS   WN TI EF ++ GF    S  C +++R    ++ + LY+DDL+L  +S+  L+  K  +  RF + D+G+  + LG+   +D A G V + +  + +D+  ++ M+ ++P + P D                                                               +  RV RY+ GT T GL++                 A++   L  YSDA+ AG L   +SA G  F+L    V++ S+ Q  V+  T E+EY+AL  A QE + +  L
Sbjct:   84 WKEACDSEVESLRKNETWTLVPLPKGRKAIGCRWVFRVKENQSGEIERFKARLVAKGFSQKYGIDYD--ETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGYVD--GDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLKRDNHDMMFVALYVDDLVLASSSDRMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQDPGLKLTKAMCEGGCKHDETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQ----------------ASSEDGLQGYSDADWAGDLADRKSASGYTFMLMSAPVSWGSKKQSSVSLSTSEAEYIALSLAIQEGKWIHRL 498          
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Match: A0A8H8JJR7_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JJR7_9AGAM)

HSP 1 Score: 200 bits (509), Expect = 9.690e-55
Identity = 137/421 (32.54%), Postives = 207/421 (49.17%), Query Frame = 1
Query:    1 WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYKRRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDVETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWNATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPELQLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATRYGME---------AASPTRLPADASTT----------------------------------------------RVLRYLIGTPTLGLLYYRQPAAATATAMVTPATAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTRLTMESEYMALFDAAQE 1098
            W AA   E+ S+ ++ V++ V RP DR  +K R VF  KR   GEI++YK R+V K F Q PGVD+    +S+PVA  +    ++++ AA    L Q+DV+TA+L+  L+EE YME P+GF +    G   VW+L  ++Y L+Q+   +   +     + GF    +    F RR G  + II+ ++DD+LL G S   L+++K ++     + DLGEA   +GI   R+ +AGT+++ +  YI D+  R+GM          A SP     D ST                                               R+LRYL  +  LG++Y+R                  +LEL  Y DA+ AG   S RS  G  F LAGG++A+SSR Q  ++  + E+EY+A   AA+E
Sbjct:  186 WLAAMLLEMKSIEQHKVWTRVNRPTDRNIVKCRWVFDYKRGPDGEILRYKARLVAKGFSQRPGVDYT--EISSPVAAADSLRTLLSIVAALELELLQIDVKTAFLHGELDEEIYMEQPEGFVE----GRGQVWELRKAIYGLKQAARAFYLRLKSILEQMGFKRCETDHAVFYRRDGEELAIILAHVDDMLLAGTSLSFLEMIKADLAKHLEIVDLGEAKMFVGIEIERNRSAGTLKISQRRYINDILARFGMTGCKTCATPMAESPNLPKLDESTIDRTRYQQLIGSLMYAMISTRADIAYATGLLAQHAANPGKEHWDAAHRILRYLNSSIDLGIIYHRSD----------------NLELQGYVDADYAGDKSSSRSTTGWAFFLAGGLIAYSSRKQPTISLSSTEAEYVATSSAARE 584          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA3.130e-6333.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0HFF8_LARCR3.290e-6334.42Copia protein Gag-int-pol protein Copia VLP protei... [more]
H3H4L3_PHYRM1.360e-6132.79Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A8K1FHK1_PYTOL1.030e-5832.72Uncharacterized protein n=3 Tax=Pythium oligandrum... [more]
H3GQK5_PHYRM5.730e-5733.09CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
H3H839_PHYRM5.900e-5732.93Integrase catalytic domain-containing protein n=4 ... [more]
H3H8P6_PHYRM1.130e-5538.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z7AJV0_9LAMI1.720e-5531.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A4T9WAI5_9FIRM2.490e-5531.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H8JJR7_9AGAM9.690e-5532.54Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19015contigP-wetherbeei_contig19015:1..1307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1119
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.22e-62
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
Cds size1119
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.803422-CDS-P-wetherbeei_contig19015:0..3151683186161.803422-CDS-P-wetherbeei_contig19015:0..315Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19015 1..315 -
1683186161.8128629-CDS-P-wetherbeei_contig19015:503..13071683186161.8128629-CDS-P-wetherbeei_contig19015:503..1307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19015 504..1307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19015.1.1prot_P-wetherbeei_contig19015.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19015 1..1307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19015.1.1

>prot_P-wetherbeei_contig19015.1.1 ID=prot_P-wetherbeei_contig19015.1.1|Name=mRNA_P-wetherbeei_contig19015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=373bp
WQAACDAEIASLTKNGVFSWVVRPKDRKTLKSRCVFKTKRNTAGEIVKYK
RRVVVKSFLQTPGVDFDMLSLSAPVANINEFHCVVALAAARGWRLHQMDV
ETAYLNALLEEEFYMEAPDGFSKRGAGGAELVWQLHWSLYRLRQSVFNWN
ATISEFFIENGFVAACSSPCGFVRRRGSSILIIVLYMDDLLLTGNSEPEL
QLLKTEIGGRFRVKDLGEAAHLLGIRASRDDAAGTVRLDKVHYIRDMATR
YGMEAASPTRLPADASTTRVLRYLIGTPTLGLLYYRQPAAATATAMVTPA
TAAASLELVDYSDANLAGRLESGRSAIGGLFLLAGGVVAFSSRLQHLVTR
LTMESEYMALFDAAQEAEQLRTL
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mRNA from alignment at P-wetherbeei_contig19015:1..1307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19015.1.1 ID=mRNA_P-wetherbeei_contig19015.1.1|Name=mRNA_P-wetherbeei_contig19015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1307bp|location=Sequence derived from alignment at P-wetherbeei_contig19015:1..1307- (Phaeothamnion wetherbeei SAG_119_79)
TGGCAGGCGGCGTGCGACGCAGAGATTGCGTCGCTGACGAAGAACGGCGT CTTCAGCTGGGTGGTGCGGCCGAAAGATCGCAAGACACTCAAAAGCCGCT GCGTGTTCAAGACCAAGCGCAACACGGCCGGTGAAATTGTCAAGTACAAG CGCCGGGTTGTAGTGAAGAGCTTCCTGCAGACGCCCGGCGTGGACTTCGA TATGCTCTCGCTGTCGGCGCCGGTGGCCAACATCAACGAATTCCACTGCG TCGTTGCTCTGGCAGCGGCGCGCGGCTGGCGTCTTCACCAGATGGACGTC GAGACGGCCTACCTCAACGCGCTGCTGGAGGAAGAGTTTTACATGGAGGC GCCGGACGGCTTTTCGAAGCGCGGCGCTGGCGGCGCGGAACTTGTTTGGC AACTGCATTGGTCGCTCTACCGGCTGCGGCAGTCGGTCTTCAACTGGAAC GCCACCATCTCGGAGTTCTTCATCGAGAACGGCTTTGTGGCCGCATGTTC TAGTCCCTGCGGTTTCGTGCGGCGCCGTGGGAGCAGCATCCTGATCATCG TGCTGTACATGGACGACTTGCTGCTGACAGGCAACAGCGAGCCCGAGCTG CAGCTGCTGAAGACGGAGATCGGCGGCCGCTTCCGGGTGAAGGACCTCGG CGAGGCGGCGCATCTTCTCGGCATACGCGCCTCTCGTGATGATGCTGCCG GAACGGTACGCCTCGACAAAGTGCACTATATCCGGGACATGGCCACTCGC TACGGCATGGAGGCGGCCAGTCCGACACGACTGCCGGCGGACGCCAGCAC AACCGTGTCGGCCACCGGCATCGAGCCGCCGCGGGCCGATGGCACCGACA GGCCGATGCCGGCAGCGGCGATTACCGGAGCATCATTGGACCGCTGATGT GTGCGGCGTGCATCACCCGCCTCGATGTGGCATACCAAGTGCGGAGCCTG GCGCGCTATGCGGCGGCGCCGGCGCATATGATGGCAGCGAAGCGTGTGCT GCGGTACCTTATCGGGACGCCAACGCTGGGGCTGCTCTACTACCGGCAGC CAGCAGCGGCAACGGCGACAGCGATGGTGACACCGGCGACGGCGGCAGCA TCACTGGAGCTGGTGGACTACAGCGACGCAAATCTCGCAGGACGCTTGGA GAGCGGCCGCTCGGCAATTGGCGGCCTGTTTCTGCTAGCGGGCGGCGTCG TGGCTTTCTCATCTCGGCTGCAGCATTTGGTGACGCGATTGACGATGGAG AGCGAGTACATGGCGCTCTTCGACGCGGCACAGGAGGCGGAGCAGCTACG GACGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19015:1..1307-

>mRNA_P-wetherbeei_contig19015.1.1 ID=mRNA_P-wetherbeei_contig19015.1.1|Name=mRNA_P-wetherbeei_contig19015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1119bp|location=Sequence derived from alignment at P-wetherbeei_contig19015:1..1307- (Phaeothamnion wetherbeei SAG_119_79)
TGGCAGGCGGCGTGCGACGCAGAGATTGCGTCGCTGACGAAGAACGGCGT
CTTCAGCTGGGTGGTGCGGCCGAAAGATCGCAAGACACTCAAAAGCCGCT
GCGTGTTCAAGACCAAGCGCAACACGGCCGGTGAAATTGTCAAGTACAAG
CGCCGGGTTGTAGTGAAGAGCTTCCTGCAGACGCCCGGCGTGGACTTCGA
TATGCTCTCGCTGTCGGCGCCGGTGGCCAACATCAACGAATTCCACTGCG
TCGTTGCTCTGGCAGCGGCGCGCGGCTGGCGTCTTCACCAGATGGACGTC
GAGACGGCCTACCTCAACGCGCTGCTGGAGGAAGAGTTTTACATGGAGGC
GCCGGACGGCTTTTCGAAGCGCGGCGCTGGCGGCGCGGAACTTGTTTGGC
AACTGCATTGGTCGCTCTACCGGCTGCGGCAGTCGGTCTTCAACTGGAAC
GCCACCATCTCGGAGTTCTTCATCGAGAACGGCTTTGTGGCCGCATGTTC
TAGTCCCTGCGGTTTCGTGCGGCGCCGTGGGAGCAGCATCCTGATCATCG
TGCTGTACATGGACGACTTGCTGCTGACAGGCAACAGCGAGCCCGAGCTG
CAGCTGCTGAAGACGGAGATCGGCGGCCGCTTCCGGGTGAAGGACCTCGG
CGAGGCGGCGCATCTTCTCGGCATACGCGCCTCTCGTGATGATGCTGCCG
GAACGGTACGCCTCGACAAAGTGCACTATATCCGGGACATGGCCACTCGC
TACGGCATGGAGGCGGCCAGTCCGACACGACTGCCGGCGGACGCCAGCAC
AACCCGTGTGCTGCGGTACCTTATCGGGACGCCAACGCTGGGGCTGCTCT
ACTACCGGCAGCCAGCAGCGGCAACGGCGACAGCGATGGTGACACCGGCG
ACGGCGGCAGCATCACTGGAGCTGGTGGACTACAGCGACGCAAATCTCGC
AGGACGCTTGGAGAGCGGCCGCTCGGCAATTGGCGGCCTGTTTCTGCTAG
CGGGCGGCGTCGTGGCTTTCTCATCTCGGCTGCAGCATTTGGTGACGCGA
TTGACGATGGAGAGCGAGTACATGGCGCTCTTCGACGCGGCACAGGAGGC
GGAGCAGCTACGGACGCTG
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