mRNA_P-wetherbeei_contig1901.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1901.4.1
Unique NamemRNA_P-wetherbeei_contig1901.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1901.4.1 vs. uniprot
Match: A0A1H8FR26_9BRAD (Calcineurin-like phosphoesterase n=2 Tax=Bradyrhizobium sp. OK095 TaxID=1882760 RepID=A0A1H8FR26_9BRAD)

HSP 1 Score: 197 bits (502), Expect = 5.300e-58
Identity = 107/287 (37.28%), Postives = 159/287 (55.40%), Query Frame = 1 
Query:  154 IADGAARFVLEKKGEFDLAVVSGDLAHMGEKEYLRVAHSFVDSTAALAQYNVERRPTLRAGLTSIALLPGNHDRFQDVFGTPGCKEFDEVFKSYWPQDDAREVAPHATARHAIFEKDGEKLAVIFADFCLRQAADAEGIVLLNKWGRGRAYEDVIQDLTHVTSSVRQKHSSVAVIWVMHFPPVS----QSPPLHKVVDFHLIEDAAKANSISLMMAGHLHRRDVYHIKHGTPVLCAGSLTSHSRDRLNWMHSVEIEISEGGIARCNKSDWHWNVLRGNFLRYSSNEI 1002
            +A+ +ARFVLE+   FDL VVSGD+A +G KE +  A +F+D        N + RPTL A      L+PGNHDR++D+FG     EFD  F  YW         P    +H + +     LAV+  DFCL    +A G   LN+ GRG+A+ +V+ ++   T+++R K+S +  IWV+HFPP+     +SP +  ++D       AK   ++L++AGHLHR  V    + TPV+C GS+        NW+H +EIE   G +    K+D+ WN   G+F+  S + I
Sbjct:    1 MAEASARFVLEEGENFDLFVVSGDVATIGTKESIAAAFNFIDDKRVHEYLNSQWRPTLGADEERFFLVPGNHDRYRDIFGGTASPEFDRAFTKYW--------RPTHGVQHRVIQDGDSHLAVVAGDFCLATDDEASG---LNRLGRGKAHAEVVDEMISRTANLRGKYSDLIAIWVVHFPPIGLPWKESPLV--LIDADYFRSQAKRYGVALVLAGHLHRNQVDLSPNQTPVICGGSMCVCEGTDHNWIHGIEIECEGGEVREVRKNDFVWNDNVGDFVGTSFSRI 274
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BLAST of mRNA_P-wetherbeei_contig1901.4.1 vs. uniprot
Match: A0A5C8WPG0_9HYPH (Metallophos domain-containing protein n=2 Tax=Methylobacterium sp. WL6 TaxID=2603901 RepID=A0A5C8WPG0_9HYPH)

HSP 1 Score: 181 bits (459), Expect = 8.770e-51
Identity = 110/323 (34.06%), Postives = 171/323 (52.94%), Query Frame = 1 
Query:    4 ALFRLLHISDFHFCTPPEGWSWKESFRKLPAL--------AWL--FVKNLRDFPLSYSEDIADGAARFVLEKKGEFDLAVVSGDLAHMGEKEYLRVAHSFVDSTAALAQYNVERRPTLRAGLTSIALLPGNHDRFQDVFGTPGCKEFDEVFKSYWPQDDAREVAPHATARHAIFEKDGEKLAVIFADFCLRQAADAEGIVLLNKWGRGRAYEDVIQDLTHVTSSVRQKHSSVAVIWVMHFPPVSQSPPLHKVVDFHLIEDAAKANSISLMMAGHLHRRDVYHIKHGTPVLCAGSLTSHSRDRLNWMHSVEIEIS-EGGIARCN 939
            ALFR +H SDFHFC  P   +    + +   +         W   F+   +  P S+SE I    A F  + K E D  +++GDLA  G +  ++VAH FV S  A    N  RRPTL+A    I +LPGNHD++ +++  P  + F+  F    P    R         H + EK+G+ +A++FADF L+Q  DA  +     +G+G  YEDV+++L  VT S++Q+ S   +IW +HF P +    L +++DF  +   AK  ++SL++ GH H   V   + G  + CAGS  +  ++  +++H VEI+I  E  I+R N
Sbjct:   15 ALFRFVHTSDFHFCVEPRRVNILSLYERRTIMMMDTAIKQGWNSGFISLAK--PASFSEAIVSATALFCYKNKDEIDGIIITGDLATTGYQSDIKVAHDFVKSAPADGYVNSIRRPTLQAADADILVLPGNHDKYSNLYAAPSSRFFELNFHLEMPNLKNR-------ISHEVREKNGKVIALVFADFSLKQRKDATSVAK-GPYGQGCVYEDVLKELVEVTRSLKQEFSGCVIIWGIHFAPFNCGSTL-QLIDFEAVNREAKDENVSLILCGHTHTPAVLK-QDGPTIFCAGSAGAIDKEDRSYIHLVEIDIGVETKISRKN 325
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BLAST of mRNA_P-wetherbeei_contig1901.4.1 vs. uniprot
Match: UPI001A96F795 (metallophosphoesterase n=1 Tax=Sabulicella rubraurantiaca TaxID=2811429 RepID=UPI001A96F795)

HSP 1 Score: 132 bits (332), Expect = 2.780e-32
Identity = 101/342 (29.53%), Postives = 151/342 (44.15%), Query Frame = 1 
Query:    1 MALFRLLHISDFHFCTPPEGWSWKESFRKLPALA-----WLFVKNLRDFPL---------SYSEDIADGAARFVLEK--KGEFDLAVVSGDLAHMGEKEYLRVAHSFVDSTAALAQYNVERRPTLRAGLTSIALLPGNHDRFQDVFGTPGCKEFDEVFKSYWPQDDAREVAPHATARHAIFEKDGEKLAVIFADFCLRQAADAE--GIVLLNKWGRGRAYEDVIQDLTHVTSSVRQKHSSVAVIWVMHFPPVSQSPPLH-KVVDFHLIEDAAKANSISLMMAGHLHRRDVYHIKHGTPVLCAGSLTSHSRDRLNWMHSVEIEISEGGIARCNKSDWHWNVLR 969
            M + R+LHISD H    P        F   PALA     W  V  +  FP          SY+        RF       G     +++GDLA  G +E L  A  F+   +  +    +        L  + LLPGNHDR+ D  GTPGC+ FD +F   WP+       P  ++   I   DGE L ++  DF L  A+DA+  G+  ++  G+G+  E+ ++ +   T + R  H   AVIW +HFPP      L  K++D   + DAA  + +  ++AGH+H    Y       V    S  S+ +        +E EI  G + R NK ++ ++  R
Sbjct:    1 MGVIRILHISDLHIAENPS------QFPPTPALAARRLLWQAVSKIL-FPTVTYAVGPFGSYNPTALRVVGRFATRAALNGFVQAVLITGDLATSGMEEDLNAAARFLRPNSTPSSSRGDLGEVRARDL--VLLLPGNHDRYADDCGTPGCRRFDAIFADLWPK-------PDVSSSTLIDATDGEALTIVAGDFSLTNASDAQPRGMPFMHL-GQGKVDENRLRQMCDATLAARN-HGREAVIWAVHFPPQDPGGSLTLKLLDGQKLIDAADNHGVHHILAGHVHSCMEYKAGRSVSVHVVASGASYDKGLRLGAQILEFEIKGGKLIRMNKIEYRFDEYR 324
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1901.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1H8FR26_9BRAD5.300e-5837.28Calcineurin-like phosphoesterase n=2 Tax=Bradyrhiz... [more]
A0A5C8WPG0_9HYPH8.770e-5134.06Metallophos domain-containing protein n=2 Tax=Meth... [more]
UPI001A96F7952.780e-3229.53metallophosphoesterase n=1 Tax=Sabulicella rubraur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1901contigP-wetherbeei_contig1901:3654..4670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1017
Hectar predicted targeting categoryother localisation
Exons1
Cds size1017
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.6787298-CDS-P-wetherbeei_contig1901:3653..46701683186161.6787298-CDS-P-wetherbeei_contig1901:3653..4670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1901 3654..4670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1901.4.1prot_P-wetherbeei_contig1901.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1901 3654..4670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1901.4.1

>prot_P-wetherbeei_contig1901.4.1 ID=prot_P-wetherbeei_contig1901.4.1|Name=mRNA_P-wetherbeei_contig1901.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=339bp
MALFRLLHISDFHFCTPPEGWSWKESFRKLPALAWLFVKNLRDFPLSYSE
DIADGAARFVLEKKGEFDLAVVSGDLAHMGEKEYLRVAHSFVDSTAALAQ
YNVERRPTLRAGLTSIALLPGNHDRFQDVFGTPGCKEFDEVFKSYWPQDD
AREVAPHATARHAIFEKDGEKLAVIFADFCLRQAADAEGIVLLNKWGRGR
AYEDVIQDLTHVTSSVRQKHSSVAVIWVMHFPPVSQSPPLHKVVDFHLIE
DAAKANSISLMMAGHLHRRDVYHIKHGTPVLCAGSLTSHSRDRLNWMHSV
EIEISEGGIARCNKSDWHWNVLRGNFLRYSSNEIATVQ*
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mRNA from alignment at P-wetherbeei_contig1901:3654..4670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1901.4.1 ID=mRNA_P-wetherbeei_contig1901.4.1|Name=mRNA_P-wetherbeei_contig1901.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1017bp|location=Sequence derived from alignment at P-wetherbeei_contig1901:3654..4670- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGTTTCGTTTGCTGCACATTTCAGACTTTCATTTTTGCACTCC
ACCGGAAGGGTGGAGTTGGAAAGAATCTTTCCGAAAACTTCCAGCGTTGG
CATGGCTCTTTGTTAAAAATCTCAGAGATTTTCCACTGAGCTATTCAGAG
GATATCGCTGACGGGGCTGCCCGATTCGTTCTTGAAAAAAAGGGGGAATT
TGATCTTGCGGTGGTTTCCGGAGATCTTGCCCATATGGGAGAGAAGGAAT
ATCTGCGTGTTGCCCATAGCTTCGTCGATAGCACTGCAGCCTTAGCTCAA
TATAACGTCGAACGTCGCCCCACTCTCAGAGCAGGGCTGACTAGCATTGC
GCTACTACCGGGCAACCATGACCGGTTTCAAGATGTATTTGGTACACCGG
GATGTAAGGAGTTTGACGAAGTCTTCAAATCATATTGGCCGCAAGATGAT
GCGCGTGAGGTTGCCCCCCACGCGACTGCTCGCCATGCAATTTTCGAAAA
GGACGGCGAGAAGCTTGCCGTTATTTTTGCGGACTTTTGCCTACGTCAAG
CGGCCGACGCAGAAGGCATCGTCCTCCTAAACAAATGGGGGCGGGGCCGA
GCTTACGAAGATGTCATTCAGGATTTGACCCATGTTACGTCTTCGGTTCG
CCAGAAACATAGTTCAGTCGCAGTCATTTGGGTTATGCATTTCCCTCCTG
TTTCCCAATCTCCGCCGCTTCATAAGGTAGTAGATTTTCATTTGATTGAG
GACGCTGCAAAGGCGAACTCGATTTCGTTGATGATGGCGGGACATCTTCA
CCGTAGAGATGTTTATCACATAAAACATGGAACTCCGGTCCTTTGTGCGG
GGTCCCTTACGTCCCATAGCAGAGATAGGTTGAACTGGATGCATTCGGTT
GAAATTGAAATTTCCGAAGGAGGTATCGCGCGTTGTAACAAAAGTGACTG
GCATTGGAATGTTCTTCGCGGCAACTTTCTAAGGTATTCGTCTAACGAGA
TTGCTACTGTACAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1901:3654..4670-

>mRNA_P-wetherbeei_contig1901.4.1 ID=mRNA_P-wetherbeei_contig1901.4.1|Name=mRNA_P-wetherbeei_contig1901.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1017bp|location=Sequence derived from alignment at P-wetherbeei_contig1901:3654..4670- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGTTTCGTTTGCTGCACATTTCAGACTTTCATTTTTGCACTCC
ACCGGAAGGGTGGAGTTGGAAAGAATCTTTCCGAAAACTTCCAGCGTTGG
CATGGCTCTTTGTTAAAAATCTCAGAGATTTTCCACTGAGCTATTCAGAG
GATATCGCTGACGGGGCTGCCCGATTCGTTCTTGAAAAAAAGGGGGAATT
TGATCTTGCGGTGGTTTCCGGAGATCTTGCCCATATGGGAGAGAAGGAAT
ATCTGCGTGTTGCCCATAGCTTCGTCGATAGCACTGCAGCCTTAGCTCAA
TATAACGTCGAACGTCGCCCCACTCTCAGAGCAGGGCTGACTAGCATTGC
GCTACTACCGGGCAACCATGACCGGTTTCAAGATGTATTTGGTACACCGG
GATGTAAGGAGTTTGACGAAGTCTTCAAATCATATTGGCCGCAAGATGAT
GCGCGTGAGGTTGCCCCCCACGCGACTGCTCGCCATGCAATTTTCGAAAA
GGACGGCGAGAAGCTTGCCGTTATTTTTGCGGACTTTTGCCTACGTCAAG
CGGCCGACGCAGAAGGCATCGTCCTCCTAAACAAATGGGGGCGGGGCCGA
GCTTACGAAGATGTCATTCAGGATTTGACCCATGTTACGTCTTCGGTTCG
CCAGAAACATAGTTCAGTCGCAGTCATTTGGGTTATGCATTTCCCTCCTG
TTTCCCAATCTCCGCCGCTTCATAAGGTAGTAGATTTTCATTTGATTGAG
GACGCTGCAAAGGCGAACTCGATTTCGTTGATGATGGCGGGACATCTTCA
CCGTAGAGATGTTTATCACATAAAACATGGAACTCCGGTCCTTTGTGCGG
GGTCCCTTACGTCCCATAGCAGAGATAGGTTGAACTGGATGCATTCGGTT
GAAATTGAAATTTCCGAAGGAGGTATCGCGCGTTGTAACAAAAGTGACTG
GCATTGGAATGTTCTTCGCGGCAACTTTCTAAGGTATTCGTCTAACGAGA
TTGCTACTGTACAGTAG
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