mRNA_P-wetherbeei_contig19001.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19001.1.1
Unique NamemRNA_P-wetherbeei_contig19001.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: A0A7K1B4E4_9ACTN (DNA helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B4E4_9ACTN)

HSP 1 Score: 210 bits (534), Expect = 1.020e-56
Identity = 148/370 (40.00%), Postives = 194/370 (52.43%), Query Frame = 1
Query:    7 LGTVGSKPERDEVLAVFNRVVRLSHSLVLDEVVDAFRRPVIREAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEIIRMLSDP--EPGVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLFIHR 1110
            LG   +KP RDEV      V  + H   +  V+      V+ +AH R  +G L +DD+L+LT R+L   P +    R     + VDEFQDTD VQ++I++ L+ P  E   P TA+P LFAVGDPKQSIY FR ADV LFA L  H     +  +LT NFR+R  +  WIN +  + F A A   +                VP+ PL+   PD+      P    V+ G       A+ A AE   +A+A D+  ++       W V     HD          RPA   D+AVLV  R  L  LE A+RRAG+P+ VEGG L Y++REV +LLRVL AV + A  + VVTALRTSVL  SD +L  HR
Sbjct:  302 LGGTAAKPTRDEVKEHLASVKAILHDHAVRHVLQLVVPLVLDDAHDRYRSGRLSFDDILVLTRRLLTRNPTIRRRLRAEIDHLCVDEFQDTDAVQYDIVQALTAPPTEDDPPSTATPVLFAVGDPKQSIYGFREADVGLFAQL--HELPHLTARQLTTNFRSRPVLLHWINALFRDWFDADAADGQ----------------VPFAPLDHHVPDA------PATVTVVGG-------AIDAPAEHVGRAQARDLARMIHAAHG-SWTV----RHDGG-------ERPARYTDIAVLVRTRADLTHLEPALRRAGIPYVVEGGALLYDTREVRDLLRVLHAVNDTASPIRVVTALRTSVLALSDVELVAHR 628          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: A0A539E507_9ACTN (DNA helicase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E507_9ACTN)

HSP 1 Score: 202 bits (513), Expect = 5.960e-54
Identity = 144/368 (39.13%), Postives = 195/368 (52.99%), Query Frame = 1
Query:   10 GTVGSKPERDEVLAVFNRVVRLSHSLVLDEVVDAFRRPVIREAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEIIRMLSDPEPGVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLL-GVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLFIHR 1110
            G   +KP RD V  + + ++       +  V+      V+REAHAR  +G+L +DD+L+LT R+L  RP +    R     + VDEFQDTD VQ++I+  L+ P    P   +P LFAVGDPKQSIY FR ADV LF  L A      +  +L+ NFR+R  V  W+N+V    F+A A + +                V + PL     D  PDA    PA V++ G   DG       A+LA QA+A+D+  +V      G  + R D  +          RPA   D+AVLV  R  L  LE A+RRAG+P+ +EGG L Y++RE  +LLRVL AV + A  +  V ALRTSVL  SD +L  HR
Sbjct:  259 GGTAAKPVRDRVKQLVDSLLTTVDDCAVRHVLQVLVPLVVREAHARYQSGSLSFDDILVLTRRLLDRRPGLCAHLRGEISHLCVDEFQDTDVVQYDIVHALTAPRDDAP---APVLFAVGDPKQSIYGFREADVGLFERLRALPHV--TPLQLSTNFRSRPGVLHWLNSVFERWFQADAATGQ----------------VAFSPLL----DHVPDA----PATVMVVGGELDGP------ADLAAQAQAHDIARVVATA--RGTWICRHDAGE----------RPAAYTDIAVLVRTRADLTHLEPALRRAGIPYVIEGGALLYDTRETRDLLRVLTAVNDTASPITAVAALRTSVLAISDIELLEHR 579          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: UPI001C3C29EE (UvrD-helicase domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C29EE)

HSP 1 Score: 195 bits (496), Expect = 1.170e-51
Identity = 142/380 (37.37%), Postives = 190/380 (50.00%), Query Frame = 1
Query:   10 GTVGSKPERD-------EVLAVFNRVVRLSHSLVLDEVVDAFRRPVIREAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEIIRMLS-----DPEPGVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAE-LTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLFIHR 1110
            G  G KP  D       E  A   R++  + +  L  V+    R ++ +A  R  +G L + DL++ T  +LR RPD     R RY  + +DEFQDTD  Q +I    +     D EPG       RLF VGDPKQSIY FR AD+  +A         G L   LT N R+R  +  W+N V+                R+  ++  P +  PY P+ A R     D    GP VV +G   D      A A   + AEA +V    R  IDEGW+V      D    P     RPAEL D+AVL+  RTGL+ LE A+R AGVPFRVEGG+L Y ++E+ +L+  L A+++P+DE+ VV ALR     CSD +L  HR
Sbjct:  270 GAWGGKPRLDAARSVALEAGAELGRLLEAARTEALCGVLPWLARTILADAGRRRRDGTLVFGDLILWTRELLR-RPDARAALRERYDVLLIDEFQDTDPWQIDIAEAFARGPGGDLEPG-------RLFLVGDPKQSIYRFRRADMAAYADERRRVREGGGLLPALTENRRSRSVIVDWVNAVVG---------------RVIEETGDPALQPPYVPIAAER-----DVELTGPGVVCMGGPTD------ARAWEIRMAEATEVAAACRAAIDEGWQV-----QDRDAGP-----RPAELRDIAVLIPARTGLSTLERALRAAGVPFRVEGGSLVYRTQELRDLINCLTAIDDPSDEVAVVGALRGVAFACSDVELAEHR 605          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: UPI001C626CBA (UvrD-helicase domain-containing protein n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C626CBA)

HSP 1 Score: 194 bits (492), Expect = 4.370e-51
Identity = 147/370 (39.73%), Postives = 183/370 (49.46%), Query Frame = 1
Query:   88 VLDEVVD--------AFRRPVIREAHARIANGALGYDDLLILTERVLRTRPDVLTDAR------RRYQRIFVDEFQDTDRVQFEIIRMLSDPEPGVPPTASP----------RLFAVGDPKQSIYAFRHADVELFAG----LAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGV-TEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLFIHR 1110
            VL E+ D        A RR  +  A  R + G L + DLL+L   +LR   D +   R       RYQR+ +DEFQDTD +Q E+   ++  +P  P  A+P          RLF VGDPKQSIY FR AD+ +F      LAA G   G    LTANFRT   +  W+N   A     P             D  P      Y PL+A RPD APDA   GP V +LG     G P    TA   + AEA DVV  +RR  DE W+V              WR   A LGD+ +LV  RT L  LE A+  AG+ +R E  +L Y SR V +LL V+RAV +P DEL  V+ALRT + GC D DL+  R
Sbjct:  307 VLREIADECAHHLGAAIRRFTLASAGERRSRGTLEFHDLLVLARALLR---DPVHGGRTRQVLHERYQRLLLDEFQDTDPIQIELAVRIAAADPRSPEAAAPDWRDVPVAAGRLFVVGDPKQSIYRFRRADIGVFLDAQRLLAADGG--GHAVTLTANFRTVPGITDWVNATFATLMAEPP-----------DDELPLTPRPDYTPLDAVRPDPAPDA---GPTVSVLGRHAHTGRP----TASEVRTAEAADVVATIRRAHDERWQV--------GAGAGGWRD--ASLGDITILVPARTSLPFLEDALSEAGIAYRTEASSLVYASRAVRDLLLVVRAVADPTDELRTVSALRTPLFGCGDDDLYRFR 643          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: UPI001F5BB1A7 (UvrD-helicase domain-containing protein n=2 Tax=Blastococcus TaxID=38501 RepID=UPI001F5BB1A7)

HSP 1 Score: 192 bits (488), Expect = 1.390e-50
Identity = 145/378 (38.36%), Postives = 195/378 (51.59%), Query Frame = 1
Query:   19 GSKPERDEVLAVFNRVVRLSHSLVLDEVVDAFRR--------PVIREAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEI-IRMLSDPEP--------GVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLF 1101
            G KP  DE+ A   +++  +  LV DEV++   R         V+  A  R A G L + DLL+L+  +LR R DV    + RY R+ +DEFQDTD +Q E+ +R+    E          VPP +   LF VGDPKQSIY FR AD+ ++          G    LT NFRT   + +W+N V      A                  P V   Y PL   R  +A       PAVV LG   D  P   + AEL ++ EA DV G++RR I EGW++   DE D+     TWR  PA L D+ VLV  RT L  LE A+  AG+P+R E  +L YE++EV +LL   RA+ +P+D L +VTALR+ + GC D DL+
Sbjct:  295 GGKPALDELKADCKQLIADAGELV-DEVLETTLRLLSRWIAARVLEAAEERRAAGRLEFHDLLVLSRDLLRRRADVRAALQARYPRLLLDEFQDTDPIQIELAVRIAGGAEAVQERWEDVAVPPGS---LFVVGDPKQSIYRFRRADIGMY---LRSQRVIGDDVRLTTNFRTTKPIVSWVNDVFGRLIVAE-----------------PDVQPAYTPLVPRREPAA-----GSPAVVALGA--DAHPDKLSAAEL-RELEAADVAGVIRRAIAEGWQIF--DEDDK-----TWR--PARLADIVVLVPARTSLPFLEDALDAAGIPYRAEASSLVYEAQEVRDLLAAARAIADPSDGLALVTALRSPLYGCGDDDLW 631          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: C5C3C8_BEUC1 (DNA helicase n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) TaxID=471853 RepID=C5C3C8_BEUC1)

HSP 1 Score: 191 bits (485), Expect = 3.500e-50
Identity = 146/386 (37.82%), Postives = 191/386 (49.48%), Query Frame = 1
Query:    4 KLGTVGSK---PERDEVLAVFNRVVRLSHSLVLDEVVDAFRRP--------VIREAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEI-IRMLSDPEPG--------VPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLF 1101
            + G VG K   P+ D V A    +V    S       DA  RP        V+R+A AR A GAL + DLL+L   +LRTR DV +  +  Y R+ +DEFQDTD +Q E+ +R+ +  E G        VPP +   LF VGDPKQSIY FR AD+  F  +       G +  LT NFR+   V AW+N    E  +               D   P     YEPL+A RP         GPAV +LG  +       A+A L ++ EA DV  ++ R   +GW V  P   +E  R L W       GDVAVLV  RT L  L  A+  AG+P+R E  +L Y + EV  L+   RA+ +P D+  VVTALR+ V GC D DL+
Sbjct:  267 RFGRVGRKTSWPDVDAVRAACTALVE-HVSAAAAAFADAAVRPLARWIAARVVRDARARAAEGALEFHDLLVLARDLLRTREDVRSSLQAAYPRLLLDEFQDTDPIQVELAVRIAAGAEGGAGDWHDVRVPPGS---LFVVGDPKQSIYRFRRADIRTFLDVRTWL---GDVCSLTTNFRSAAPVLAWVNATFGELIQP-------------VDGAQPA----YEPLDAVRPPVG-----VGPAVTVLGA-QPHQDLPRASAALLREREAADVAAVLLRAAGQGWTVHDPRGGEE--RELRW-------GDVAVLVPARTSLPFLVEALDAAGIPYRAESSSLVYSATEVRALMAAARAIADPGDQFSVVTALRSQVYGCGDDDLW 613          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: UPI000B2E08E3 (UvrD-helicase domain-containing protein n=1 Tax=Microbacterium chocolatum TaxID=84292 RepID=UPI000B2E08E3)

HSP 1 Score: 187 bits (476), Expect = 3.740e-50
Identity = 143/400 (35.75%), Postives = 198/400 (49.50%), Query Frame = 1
Query:    1 LKLGTVGSKPERDEVLAVFNRVVRLSH--SLVLDEVVDAFRRPVIR--------EAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEI-IRMLSDPEP--------GVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLFIHRHR---HPSGRR 1134
            LK G VG  P   ++  V      L+   S ++  VVDA  RPV R         A  RIA+G L + DLL+    +LR  PDV  + + +YQR+ +DEFQDTD +Q E+ +R+    E          VPP +   LF VGDPKQSIY FR A +E +     H  T  SL+    +FRT   V  WIN V               N  ++ +   PR       L   RPD A      GPAV LLG  E        +AE  ++AEA+D+ G++ + + + W V   DE  +  RP+  R       D+A+L+  RT L  LE+A+  AG+P+R E  +L Y + EV  ++  LRA+ +  DEL  V ALR+ + GC D DL+ +R       SGRR
Sbjct:  261 LKAGNVGRAPNWPDIAGVRGACADLASEASALVSRVVDAAVRPVARWIAAWVLESAEGRIASGRLEFHDLLVGARELLRRDPDVREELQGQYQRLLIDEFQDTDPIQLELAVRIAGGREAIAEDWRDIEVPPGS---LFLVGDPKQSIYRFRRASIETYLEAQQHLGTTVSLSR---SFRTTPPVLDWINGVFG-------------NVIVEEERKQPRFAA----LAPDRPDVA-----TGPAVTLLGANEHAD--ARLSAEALRRAEADDIAGVITQALVDKWTVF--DERADEWRPIRAR-------DIAILLPARTSLPFLEAALTAAGIPYRTESSSLVYSAPEVRAMMAALRAIGDTGDELATVAALRSPLFGCGDDDLYRYRRAGAGSASGRR 621          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: A0A6G1SS95_9CHLR (DNA helicase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6G1SS95_9CHLR)

HSP 1 Score: 190 bits (482), Expect = 8.760e-50
Identity = 135/348 (38.79%), Postives = 185/348 (53.16%), Query Frame = 1
Query:   88 VLDEVVDAFRRPVIREAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEIIRMLSDPEPGVPPTASP----------RLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLF 1101
            V+  + D+  R V   A AR + G + + DLLIL   +LR RP+V   ARRR++ + +DEFQDTD +Q EI  +L+ PE G P  A+           RLF VGDPKQSIY FR AD+EL+  +      D  L  LT NFR+   V  W+N +        AL  KA            R    Y PL A RP          P+V L+G        V+A A+  +  EA ++V L++ +  + W V   D  D+ G  +T   RPA   D+AVL   R GLA L  A+  AG+P+R+E   L YE++EV +LL VL+A+E+P +E+ VV ALR+    C+D DLF
Sbjct:  299 VVSALTDSIHRFVEASARARRSKGEVEFQDLLILARDLLRDRPEVRAAARRRFRALLIDEFQDTDPLQTEIAFLLAAPE-GAPLGAAEWWRDSEVEAGRLFFVGDPKQSIYRFRRADIELYQSVQTRFEDD--LEHLTRNFRSVPPVIQWVNALFG------ALIGKAR-----------RGQAGYVPLVAHRPSLREQ-----PSVYLMGEE------VNANADTVRATEAQELVRLIQAVKRDQWPVF--DSKDDAGNEVT---RPARYADIAVLSPTRPGLAALLPALEDAGIPYRLESRGLVYETQEVQDLLTVLQAIEDPTNEVAVVAALRSPAFACADDDLF 610          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: A0A6N7FF70_9ACTN (DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FF70_9ACTN)

HSP 1 Score: 189 bits (481), Expect = 1.230e-49
Identity = 142/348 (40.80%), Postives = 180/348 (51.72%), Query Frame = 1
Query:  109 AFRRPVIREAHARIANGALGYDDLLILTERVLRTR---PDVLTDARRRYQRIFVDEFQDTDRVQFEIIRMLSDPEPG------VP----PTASPRLFAVGDPKQSIYAFRHADVELFAGLAAH-GATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHAT---AELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLF 1101
            A RR  +  A  R A G L + DLL+L  ++LR     P+V      RY+R+ +DEFQDTD +Q E+   ++  +P       +P    P A   LF VGDPKQSIY FR AD+  F    A  G   G   ELTANFRT G V  W+N  +       AL  +A    +   S P      Y  L A RP   P A   GP V +LG       A+HA    A+  + AEA +V   V R + EGW V   D         TWR  PA LGDV +LV  RT L  LE A+  +G+P+R E  +L Y +R V +LL VLRAV++P D+L  V ALRT +LGC D DLF
Sbjct:  320 AVRRFTLAAAEERRAAGRLEFHDLLVLARQLLRDPEHGPEVRAHLHGRYRRLLLDEFQDTDPIQIELAVRITAADPASEDAGRLPWDEVPVARGALFVVGDPKQSIYRFRRADIATFLRARARFGPEAGGPVELTANFRTGGPVIDWVNHALG------ALMGEAPAVDLDTPSQPD-----YVALRAVRP--GPGA---GPPVAVLGR------ALHAPRTGADELRTAEAVEVAATVARAVTEGWSVAERDG--------TWR--PARLGDVTILVPARTSLPFLEEALDASGIPYRAESSSLVYATRAVRDLLMVLRAVDDPTDQLRTVAALRTPLLGCGDDDLF 635          
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Match: A0A0M8MNF5_9MICO (DNA helicase n=2 Tax=Microbacterium chocolatum TaxID=84292 RepID=A0A0M8MNF5_9MICO)

HSP 1 Score: 188 bits (478), Expect = 2.980e-49
Identity = 142/396 (35.86%), Postives = 197/396 (49.75%), Query Frame = 1
Query:    1 LKLGTVGSKPERDEVLAVFNRVVRLSH--SLVLDEVVDAFRRPVIR--------EAHARIANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEI-IRMLSDPEP--------GVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATDGSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPRVTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAEANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKRTGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLVVTALRTSVLGCSDADLFIHRHRHPSGR 1131
            LK G VG  P   ++  V      L+   S ++  VVDA  RPV R         A  RIA+G L + DLL+    +LR  PDV  + + +YQR+ +DEFQDTD +Q E+ +R+    E          VPP +   LF VGDPKQSIY FR A +E +     H  T  SL+    +FRT   V  WIN V               N  ++ +   PR       L   RPD A      GPAV LLG  E        +AE  ++AEA+D+ G++ + + + W V   DE  +  RP+  R       D+A+L+  RT L  LE+A+  AG+P+R E  +L Y + EV  ++  LRA+ +  DEL  V ALR+ + GC D DL+  R+R   GR
Sbjct:  261 LKAGNVGRAPNWPDIAGVRGACADLASEASALVSRVVDAAVRPVARWIAAWVLESAEGRIASGRLEFHDLLVGARELLRRDPDVREELQGQYQRLLIDEFQDTDPIQLELAVRIAGGREAIAEDWRDIEVPPGS---LFLVGDPKQSIYRFRRASIETYLEAQQHLGTTVSLSR---SFRTTPPVLDWINGVFG-------------NVIVEEERKQPRFAA----LAPDRPDVA-----TGPAVTLLGANEHAD--ARLSAEALRRAEADDIAGVITQALVDKWTVF--DERADEWRPIRAR-------DIAILLPARTSLPFLEAALTAAGIPYRTESSSLVYSAPEVRAMMAALRAIGDTGDELATVAALRSPLFGCGDDDLY--RYRRAGGR 615          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1B4E4_9ACTN1.020e-5640.00DNA helicase n=2 Tax=root TaxID=1 RepID=A0A7K1B4E4... [more]
A0A539E507_9ACTN5.960e-5439.13DNA helicase n=1 Tax=Acidimicrobiaceae bacterium T... [more]
UPI001C3C29EE1.170e-5137.37UvrD-helicase domain-containing protein n=1 Tax=Mi... [more]
UPI001C626CBA4.370e-5139.73UvrD-helicase domain-containing protein n=1 Tax=Ia... [more]
UPI001F5BB1A71.390e-5038.36UvrD-helicase domain-containing protein n=2 Tax=Bl... [more]
C5C3C8_BEUC13.500e-5037.82DNA helicase n=1 Tax=Beutenbergia cavernae (strain... [more]
UPI000B2E08E33.740e-5035.75UvrD-helicase domain-containing protein n=1 Tax=Mi... [more]
A0A6G1SS95_9CHLR8.760e-5038.79DNA helicase n=1 Tax=Dehalococcoidia bacterium Tax... [more]
A0A6N7FF70_9ACTN1.230e-4940.80DNA helicase n=1 Tax=Acidimicrobiia bacterium TaxI... [more]
A0A0M8MNF5_9MICO2.980e-4935.86DNA helicase n=2 Tax=Microbacterium chocolatum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19001contigP-wetherbeei_contig19001:177..1313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog471853.Bcav_1571
PFAMsPDDEXK_1,UvrD-helicase,UvrD_C
Model size1137
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.74e-51
EggNOG OGsCOG1074@1|root,COG1074@2|Bacteria,2GNKH@201174|Actinobacteria
DescriptionA helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA
Cds size1137
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.5322776-CDS-P-wetherbeei_contig19001:176..13131683186161.5322776-CDS-P-wetherbeei_contig19001:176..1313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19001 177..1313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19001.1.1prot_P-wetherbeei_contig19001.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19001 177..1313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19001.1.1

>prot_P-wetherbeei_contig19001.1.1 ID=prot_P-wetherbeei_contig19001.1.1|Name=mRNA_P-wetherbeei_contig19001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=379bp
LKLGTVGSKPERDEVLAVFNRVVRLSHSLVLDEVVDAFRRPVIREAHARI
ANGALGYDDLLILTERVLRTRPDVLTDARRRYQRIFVDEFQDTDRVQFEI
IRMLSDPEPGVPPTASPRLFAVGDPKQSIYAFRHADVELFAGLAAHGATD
GSLAELTANFRTRGNVAAWINTVMAERFRAPALSAKALNERIKADSWPPR
VTVPYEPLEATRPDSAPDAHDPGPAVVLLGVTEDGTPAVHATAELAQQAE
ANDVVGLVRRIIDEGWRVLRPDEHDEHGRPLTWRSRPAELGDVAVLVAKR
TGLAVLESAMRRAGVPFRVEGGTLAYESREVYELLRVLRAVENPADELLV
VTALRTSVLGCSDADLFIHRHRHPSGRRV
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mRNA from alignment at P-wetherbeei_contig19001:177..1313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19001.1.1 ID=mRNA_P-wetherbeei_contig19001.1.1|Name=mRNA_P-wetherbeei_contig19001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig19001:177..1313+ (Phaeothamnion wetherbeei SAG_119_79)
CTGAAGCTCGGCACCGTCGGCTCCAAGCCCGAACGTGATGAGGTGCTGGC GGTGTTCAACCGCGTCGTTCGGCTGTCGCACTCGCTGGTGCTCGACGAGG TCGTCGACGCCTTTCGCCGACCCGTCATCCGCGAGGCGCACGCGCGCATC GCCAACGGCGCGCTCGGCTACGACGACCTGCTCATCCTCACCGAGCGCGT GCTGCGGACCCGTCCGGACGTGCTCACCGACGCTCGCCGCCGCTACCAGC GGATCTTCGTCGACGAGTTCCAGGACACCGACCGCGTGCAGTTCGAGATC ATCCGCATGCTCTCCGACCCCGAGCCGGGTGTGCCCCCTACGGCGTCGCC ACGGCTGTTCGCGGTCGGCGACCCGAAGCAGTCGATCTACGCCTTCCGCC ACGCCGACGTCGAGCTGTTCGCCGGCCTCGCTGCTCACGGCGCCACCGAC GGATCGCTGGCCGAACTGACGGCCAACTTCCGCACGCGCGGCAACGTCGC GGCGTGGATCAACACGGTGATGGCCGAACGATTCCGCGCCCCCGCACTCA GCGCCAAGGCACTCAACGAACGAATCAAGGCCGACAGCTGGCCTCCACGC GTGACGGTGCCGTACGAGCCGCTCGAGGCGACGCGCCCCGACAGCGCCCC GGACGCGCACGACCCCGGCCCGGCGGTGGTGCTGCTCGGCGTCACCGAGG ACGGCACGCCTGCGGTGCACGCGACCGCCGAGCTCGCCCAGCAGGCCGAG GCCAACGACGTGGTCGGACTGGTGCGGCGGATCATCGACGAGGGATGGCG CGTGCTGCGCCCCGACGAGCACGACGAGCACGGGAGACCGCTGACGTGGC GCAGCCGTCCGGCCGAGCTGGGCGACGTCGCCGTGCTGGTTGCCAAGCGC ACCGGGCTCGCGGTGCTCGAGTCGGCGATGCGCCGAGCGGGCGTGCCCTT CCGCGTCGAAGGCGGCACGTTGGCCTACGAGAGCCGGGAGGTCTACGAGC TGTTGCGCGTGCTGCGTGCCGTCGAGAACCCGGCCGACGAGCTGCTGGTC GTCACCGCGCTGCGCACCAGCGTGCTCGGCTGCTCGGACGCCGACCTGTT CATCCATCGCCACCGACACCCGAGCGGGAGGCGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19001:177..1313+

>mRNA_P-wetherbeei_contig19001.1.1 ID=mRNA_P-wetherbeei_contig19001.1.1|Name=mRNA_P-wetherbeei_contig19001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig19001:177..1313+ (Phaeothamnion wetherbeei SAG_119_79)
CTGAAGCTCGGCACCGTCGGCTCCAAGCCCGAACGTGATGAGGTGCTGGC
GGTGTTCAACCGCGTCGTTCGGCTGTCGCACTCGCTGGTGCTCGACGAGG
TCGTCGACGCCTTTCGCCGACCCGTCATCCGCGAGGCGCACGCGCGCATC
GCCAACGGCGCGCTCGGCTACGACGACCTGCTCATCCTCACCGAGCGCGT
GCTGCGGACCCGTCCGGACGTGCTCACCGACGCTCGCCGCCGCTACCAGC
GGATCTTCGTCGACGAGTTCCAGGACACCGACCGCGTGCAGTTCGAGATC
ATCCGCATGCTCTCCGACCCCGAGCCGGGTGTGCCCCCTACGGCGTCGCC
ACGGCTGTTCGCGGTCGGCGACCCGAAGCAGTCGATCTACGCCTTCCGCC
ACGCCGACGTCGAGCTGTTCGCCGGCCTCGCTGCTCACGGCGCCACCGAC
GGATCGCTGGCCGAACTGACGGCCAACTTCCGCACGCGCGGCAACGTCGC
GGCGTGGATCAACACGGTGATGGCCGAACGATTCCGCGCCCCCGCACTCA
GCGCCAAGGCACTCAACGAACGAATCAAGGCCGACAGCTGGCCTCCACGC
GTGACGGTGCCGTACGAGCCGCTCGAGGCGACGCGCCCCGACAGCGCCCC
GGACGCGCACGACCCCGGCCCGGCGGTGGTGCTGCTCGGCGTCACCGAGG
ACGGCACGCCTGCGGTGCACGCGACCGCCGAGCTCGCCCAGCAGGCCGAG
GCCAACGACGTGGTCGGACTGGTGCGGCGGATCATCGACGAGGGATGGCG
CGTGCTGCGCCCCGACGAGCACGACGAGCACGGGAGACCGCTGACGTGGC
GCAGCCGTCCGGCCGAGCTGGGCGACGTCGCCGTGCTGGTTGCCAAGCGC
ACCGGGCTCGCGGTGCTCGAGTCGGCGATGCGCCGAGCGGGCGTGCCCTT
CCGCGTCGAAGGCGGCACGTTGGCCTACGAGAGCCGGGAGGTCTACGAGC
TGTTGCGCGTGCTGCGTGCCGTCGAGAACCCGGCCGACGAGCTGCTGGTC
GTCACCGCGCTGCGCACCAGCGTGCTCGGCTGCTCGGACGCCGACCTGTT
CATCCATCGCCACCGACACCCGAGCGGGAGGCGCGTG
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