mRNA_P-wetherbeei_contig190.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig190.9.1
Unique NamemRNA_P-wetherbeei_contig190.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig190.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig190contigP-wetherbeei_contig190:6402..6841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.2720277-UTR-P-wetherbeei_contig190:6401..64601683186161.2720277-UTR-P-wetherbeei_contig190:6401..6460Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig190 6402..6460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.2813988-CDS-P-wetherbeei_contig190:6460..64861683186161.2813988-CDS-P-wetherbeei_contig190:6460..6486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 6461..6486 +
1683186161.289596-CDS-P-wetherbeei_contig190:6606..68411683186161.289596-CDS-P-wetherbeei_contig190:6606..6841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 6607..6841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig190.9.1prot_P-wetherbeei_contig190.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig190 6461..6841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig190.9.1

>prot_P-wetherbeei_contig190.9.1 ID=prot_P-wetherbeei_contig190.9.1|Name=mRNA_P-wetherbeei_contig190.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MYACAAGNKEFRRRPSRGATRASAAAPPPRRCEHQREYRRSSTLAKTGRC
FGKPLSFAAFSNLSASLFAACACQEEWGLQNRNCAVV
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mRNA from alignment at P-wetherbeei_contig190:6402..6841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig190.9.1 ID=mRNA_P-wetherbeei_contig190.9.1|Name=mRNA_P-wetherbeei_contig190.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=440bp|location=Sequence derived from alignment at P-wetherbeei_contig190:6402..6841+ (Phaeothamnion wetherbeei SAG_119_79)
AGCTCCTGCACATCTCCTAACAGCTAACCGCTACAGACAAGGCGGCCTTA
CCCGCGCTCATGTACGCATGCGCCGCGGGAAACAAGTGAGTCCGGCCCAG
TTGATGCAGGTGCCACAAATCTACTGGCTGGCTCCCGGCAAATCTGCAAG
AGATGAACATCGTAACACCGTTCCTCGTTCTTGGCTGTGTTGGCTTGCTA
TGCAGGGAGTTTCGACGGCGTCCTAGCCGTGGTGCTACTCGAGCTTCTGC
TGCCGCTCCTCCGCCTCGACGCTGTGAGCACCAGCGGGAATACCGTCGCT
CCTCAACATTAGCAAAGACCGGGAGATGCTTTGGTAAGCCGCTCTCCTTT
GCCGCATTCAGTAATCTTTCCGCGTCGCTTTTCGCAGCGTGCGCTTGCCA
GGAAGAGTGGGGTTTGCAAAATAGGAATTGCGCTGTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig190:6402..6841+

>mRNA_P-wetherbeei_contig190.9.1 ID=mRNA_P-wetherbeei_contig190.9.1|Name=mRNA_P-wetherbeei_contig190.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig190:6402..6841+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCATGCGCCGCGGGAAACAAGGAGTTTCGACGGCGTCCTAGCCG
TGGTGCTACTCGAGCTTCTGCTGCCGCTCCTCCGCCTCGACGCTGTGAGC
ACCAGCGGGAATACCGTCGCTCCTCAACATTAGCAAAGACCGGGAGATGC
TTTGGTAAGCCGCTCTCCTTTGCCGCATTCAGTAATCTTTCCGCGTCGCT
TTTCGCAGCGTGCGCTTGCCAGGAAGAGTGGGGTTTGCAAAATAGGAATT
GCGCTGTCGTC
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