mRNA_P-wetherbeei_contig190.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig190.4.1
Unique NamemRNA_P-wetherbeei_contig190.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig190.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig190contigP-wetherbeei_contig190:3304..4838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1252
Hectar predicted targeting categoryother localisation
Exons2
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.1572225-CDS-P-wetherbeei_contig190:3303..34071683186161.1572225-CDS-P-wetherbeei_contig190:3303..3407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 3304..3407 +
1683186161.169727-CDS-P-wetherbeei_contig190:3690..42881683186161.169727-CDS-P-wetherbeei_contig190:3690..4288Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 3691..4288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.1778736-UTR-P-wetherbeei_contig190:4288..48381683186161.1778736-UTR-P-wetherbeei_contig190:4288..4838Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig190 4289..4838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig190.4.1prot_P-wetherbeei_contig190.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig190 3304..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig190.4.1

>prot_P-wetherbeei_contig190.4.1 ID=prot_P-wetherbeei_contig190.4.1|Name=mRNA_P-wetherbeei_contig190.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
MAETTTAYQDRHRRRCRLCRRYRGRHRSCRQRHSWNLQRVPRTLEQGLRA
ATKGGRRVCQAAGKYGERRDKQPRARLQEWQEKPTHGKCRVTLIKAPSFL
EWSPYLSLILLGSPIRHRSFFRRSSCCTVVHDQLGHALQVWLLCGDRNRS
LTQTVDGVQLPGSATMTRQVFAWRLVLLPSLSDSLFITSFLSSTYLSAYR
LSRSLHSLQNLTLHACQLAPHSSSFRVQERQPV*
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mRNA from alignment at P-wetherbeei_contig190:3304..4838+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig190.4.1 ID=mRNA_P-wetherbeei_contig190.4.1|Name=mRNA_P-wetherbeei_contig190.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1535bp|location=Sequence derived from alignment at P-wetherbeei_contig190:3304..4838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAAACCACCACTGCCTACCAGGACCGCCACCGCCGCCGCTGCCG
CCTCTGTCGCCGGTACCGAGGGCGACACCGCAGCTGCCGTCAACGGCACT
CATGGCGCGTGCCACCGCTGCTTCCGCCTCCATTTTTACTTTTTCCACCA
CACTTAGGGCACTCTTAAAGGAGGTATTCTGCTCTTTCTAGCAGCCGTGG
TGCGTGGCTTTCTGCCAGCCAGACCCCCTAGTAAGCCCGCCTCCTGCCAC
TGCGGAGAGGCAGGGTGGGCGGTGGGCGGAGATTTGGAATATTGTTCCTT
TTTTCAGGATTGAAGTACCAGGCAGGGGCAATCGAACCATGAGGTAGAGA
TATCAAAAAATCCTTTGCTGCACTTCACTAGCTGCAGGAACCTGCAGCGG
GTACCGCGTACCTTGGAGCAAGGCCTTCGTGCTGCGACAAAAGGAGGGCG
GCGGGTCTGCCAGGCTGCTGGAAAGTATGGAGAGCGGCGCGATAAGCAAC
CTCGTGCGAGGCTTCAGGAGTGGCAGGAGAAACCTACCCACGGTAAGTGC
CGCGTCACGTTAATCAAAGCCCCTTCTTTCCTCGAGTGGTCACCTTATCT
CTCACTTATTTTGCTTGGCTCTCCCATCCGTCATCGCTCCTTCTTCCGCC
GTTCCTCCTGCTGCACCGTCGTGCATGATCAATTGGGGCATGCTCTGCAG
GTCTGGCTTCTTTGTGGGGACAGAAATAGGAGCTTAACCCAAACTGTTGA
TGGCGTGCAGCTTCCGGGGTCGGCGACGATGACGAGGCAGGTTTTTGCTT
GGCGGCTCGTATTGTTGCCGAGCCTGAGCGACTCACTATTTATCACCTCT
TTCCTTTCCTCCACCTACCTGTCTGCCTACCGGTTGTCTCGCTCTCTGCA
CAGCCTTCAGAACCTCACCCTACATGCGTGCCAGCTCGCTCCACATTCGT
CGTCTTTTCGTGTGCAGGAAAGACAACCCGTTTGATTCCCTAGGAAAAAA
AGTATTTGAGGCAGGGCAGTGGTGTGCCATTTGGACGAGGCAGAAGCTTT
GCAAATGCTCCAAGGGAAGGAATGGGAAGGCGCGCTTGCGTGACAGGCAC
ACCCCCGGCAGGCCCGATGGGAAGCACCTGTGCGACAAGCGCAATGATGG
CGGCAGGACTGTGCTTATCGCCGCCACCGCCGCTAGCCGTGGCGAGGTCA
TTGGAGTGCTGCTGCGGTTTGCAGAGGATACTTCCGACAAGGTATTGTAC
TATCAAGCCATAGCCAGCAGGGGTGGCGGGCTGTCTACTTTTCTCCGCTG
CGTACGTTGCGTAGCGACTATCTCCCTCCGACTGATGCTCTTCCGCGCGA
TATGCCGCGCCAGAGCGAACGTCGGAAGCGTCCCGACAATGTAATCACAA
CAACTGCCACCGTGACAAGAACAAGCGGTGCGCACTTGTGCATGCTGCAA
GCAGTGGAAGTGTGTTGGCCTCCTTCACTTTGATCTTGGAGCGCTTGGCT
GGTGATTTCTTCTCGAAGGACGACAGCGACGTAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig190:3304..4838+

>mRNA_P-wetherbeei_contig190.4.1 ID=mRNA_P-wetherbeei_contig190.4.1|Name=mRNA_P-wetherbeei_contig190.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig190:3304..4838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGAAACCACCACTGCCTACCAGGACCGCCACCGCCGCCGCTGCCG
CCTCTGTCGCCGGTACCGAGGGCGACACCGCAGCTGCCGTCAACGGCACT
CATGGAACCTGCAGCGGGTACCGCGTACCTTGGAGCAAGGCCTTCGTGCT
GCGACAAAAGGAGGGCGGCGGGTCTGCCAGGCTGCTGGAAAGTATGGAGA
GCGGCGCGATAAGCAACCTCGTGCGAGGCTTCAGGAGTGGCAGGAGAAAC
CTACCCACGGTAAGTGCCGCGTCACGTTAATCAAAGCCCCTTCTTTCCTC
GAGTGGTCACCTTATCTCTCACTTATTTTGCTTGGCTCTCCCATCCGTCA
TCGCTCCTTCTTCCGCCGTTCCTCCTGCTGCACCGTCGTGCATGATCAAT
TGGGGCATGCTCTGCAGGTCTGGCTTCTTTGTGGGGACAGAAATAGGAGC
TTAACCCAAACTGTTGATGGCGTGCAGCTTCCGGGGTCGGCGACGATGAC
GAGGCAGGTTTTTGCTTGGCGGCTCGTATTGTTGCCGAGCCTGAGCGACT
CACTATTTATCACCTCTTTCCTTTCCTCCACCTACCTGTCTGCCTACCGG
TTGTCTCGCTCTCTGCACAGCCTTCAGAACCTCACCCTACATGCGTGCCA
GCTCGCTCCACATTCGTCGTCTTTTCGTGTGCAGGAAAGACAACCCGTTT
GA
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