mRNA_P-wetherbeei_contig190.16.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig190.16.1
Unique NamemRNA_P-wetherbeei_contig190.16.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A165UZ38_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165UZ38_9AGAM)

HSP 1 Score: 138 bits (347), Expect = 4.000e-37
Identity = 71/138 (51.45%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            E  SL E+GTFE+ E P  R+A+G RWV K KRN DGS+ R+K RLVA+GF+Q+ G DY   E  AP      +R  LA+    D E+E +DI TAYLN  + E++YMR PKGFE  GP+    VWRL++ LYGL+Q+
Sbjct:   64 EIQSLVENGTFELVECPPGRKAIGSRWVFKVKRNADGSIERYKGRLVAKGFSQRPGFDY--NETFAPTPKWASLRAILALAALEDLELESVDISTAYLNGTLEEDVYMRQPKGFEQKGPE---WVWRLQKLLYGLKQA 196          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY)

HSP 1 Score: 132 bits (332), Expect = 5.930e-36
Identity = 65/130 (50.00%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   25 GTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            GT+E+ +LP +R A+GC+WV +KK N +G VV++KARLVAQG++Q  G+D++  E  APV  ++ +R  LA+ +  +WEI QMD+  AYLN  + EEIYMR P+GF     DG   V RL ++LYGL+QS
Sbjct:    2 GTWELQDLPKDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFL--ETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFN----DGSGHVCRLHKTLYGLKQS 125          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A177TY59_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TY59_9BASI)

HSP 1 Score: 140 bits (353), Expect = 6.240e-36
Identity = 73/135 (54.07%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   10 SLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            SL   GT+E+ ELP  R+A+G RWV K K + +G   R+KARLVAQGF QQ GVDY   E  APVA  D  R   A+ ++  W I Q+D+ TAYLN  + EEIYMR P GFE    DGK +V RLR  LYGL+QS
Sbjct: 1500 SLMGMGTWELMELPPNRKAIGSRWVYKLKLDEEGQAARWKARLVAQGFTQQPGVDYF--ETFAPVARFDSARIIFALAVHHGWVIHQLDVVTAYLNGDLDEEIYMRQPPGFEQKDKDGKELVCRLRLPLYGLKQS 1632          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 138 bits (348), Expect = 2.900e-35
Identity = 68/138 (49.28%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            EY  LQ  GT+E+ +LP +R A+GC+WV ++K N +G VV++KARLVAQG++Q  G+D++  E  APV  ++ +R  LA+ +  +WEI QMD+  AYLN  + EEIYMR P+GF+    DG   + RLR++LYGL+QS
Sbjct:  929 EYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFL--ETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFD----DGSGRICRLRKTLYGLKQS 1060          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 131 bits (329), Expect = 7.870e-35
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            E  SL+ +GT+E+ +LP  R+A+  +WV K KR  DGS+ R+KARLV  GF+Q EG+DY   E  APV   + VR  LA+   F +++  MD++TA+LN  + E+IYMR PKGF V G + K  V  L++SLYGL+Q+
Sbjct:   89 EMSSLKRNGTWELVDLPPGRKAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYT--ETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFVVKGQESK--VCHLKKSLYGLKQA 222          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A151R2I2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R2I2_CAJCA)

HSP 1 Score: 127 bits (318), Expect = 7.980e-35
Identity = 61/138 (44.20%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            EY +L  + T+ + +LP  R  +GC+WV   K N DGS+ R+KARLVA+GF+QQ+G+D+   E  +PV  +  +R  L + I   W+I+Q+D++ A+LN  ++E+IYM  P GFEVS    K +V +L R+LYGL+Q+
Sbjct:    4 EYTALMNNNTWSLVDLPPHRHTVGCKWVFSIKENVDGSINRYKARLVAKGFHQQQGLDFT--ETFSPVIKLVTIRIILTLAITNHWDIQQIDVNNAFLNGHLTEDIYMEQPPGFEVSN---KKLVCKLNRALYGLKQA 136          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A5CAP5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5CAP5_VITVI)

HSP 1 Score: 127 bits (318), Expect = 8.710e-35
Identity = 61/138 (44.20%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            E  S++++G +++ ELP   + +GC+W+ K K+++ G++VR+K RLVA+GF Q+EG+D   +E  +PV+S D  R  +A+  ++D E+ QMD+ TA+LN  + E IYM  PK FE +  D K +V RL+RS+YGL+QS
Sbjct:    4 EMKSMKDNGVWDLVELPKGVKLIGCKWIFKTKQDSKGNIVRYKTRLVAKGFTQKEGIDC--KETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPKNFESN--DSKQLVCRLKRSIYGLKQS 137          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A6D2JTF8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JTF8_9BRAS)

HSP 1 Score: 137 bits (344), Expect = 1.000e-34
Identity = 70/140 (50.00%), Postives = 95/140 (67.86%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKP--MVWRLRRSLYGLRQS 414
            E ++L++  T+EIC LP ++ A+GCRWV K K N DGS+ R+KARLVA+GF QQEGVD+V  +  +PVA M  V+T LAV    DW + Q+DI  A+LN  + EEIYM  P G+     +  P   V RL++SLYGL+Q+
Sbjct:  981 ELMALEKSDTWEICSLPDDKHAIGCRWVYKTKLNADGSLERYKARLVAKGFTQQEGVDFV--DTFSPVAKMTTVKTLLAVAAAKDWSLTQLDISNAFLNGDLDEEIYMTLPPGYTAKPGESLPPNAVCRLKKSLYGLKQA 1118          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A5C8R2_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5C8R2_VITVI)

HSP 1 Score: 135 bits (340), Expect = 1.550e-34
Identity = 68/135 (50.37%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   10 SLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            +L+++GT+EI ELPAE+R +GC+W+   K N DGSV RFKARLVA+GF Q   +DY  EE  APVA ++ VR  L++    DW + Q+D+  A+LN  ++EE+YM  P GFE      K  + +LRRSLYGL+QS
Sbjct:  101 ALEKNGTWEISELPAEKRPVGCKWIFTVKYNEDGSVNRFKARLVAKGFTQSYRIDY--EETFAPVAKLNTVRVLLSLAANLDWPLHQLDVKNAFLNGDLAEEVYMEIPPGFETQTTRNK--ICKLRRSLYGLKQS 231          
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 136 bits (342), Expect = 1.800e-34
Identity = 68/138 (49.28%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQGFNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNAPVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS 414
            EY SL+E+ T+++CELPA R A+GCRWV  KK +++G + R+KARLVAQGF+Q+ G+D   E+  APV  +  VR  +A+G+  DW + QMD+ TAYLN  +   IYM+ P+GF   G +   +V  L++SLYGL+QS
Sbjct:  395 EYKSLEENKTWKLCELPASRTAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDV--EQTYAPVTRIQSVRILIALGVQLDWHMHQMDMVTAYLNGTLDTMIYMKQPEGFIKEGSEN--LVCDLQKSLYGLKQS 528          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig190.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A165UZ38_9AGAM4.000e-3751.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GXA0_9APHY5.930e-3650.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177TY59_9BASI6.240e-3654.07Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A401GYH9_9APHY2.900e-3549.28Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A5E8C1W8_9ASCO7.870e-3547.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151R2I2_CAJCA7.980e-3544.20Retrovirus-related Pol polyprotein from transposon... [more]
A5CAP5_VITVI8.710e-3544.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JTF8_9BRAS1.000e-3450.00Integrase catalytic domain-containing protein n=1 ... [more]
A5C8R2_VITVI1.550e-3450.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B3L7_ROZAC1.800e-3449.28Integrase, catalytic core domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig190contigP-wetherbeei_contig190:10549..10962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3827.XP_004516035.1
PFAMsRVP_2,Retrotrans_gag,zf-CCHC
Model size414
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.7e-33
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,388SY@33090|Viridiplantae,3GND2@35493|Streptophyta
DescriptionDNA RNA polymerases superfamily protein
Cds size414
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.4706914-CDS-P-wetherbeei_contig190:10548..109621683186161.4706914-CDS-P-wetherbeei_contig190:10548..10962Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 10549..10962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig190.16.1prot_P-wetherbeei_contig190.16.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig190 10549..10962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig190.16.1

>prot_P-wetherbeei_contig190.16.1 ID=prot_P-wetherbeei_contig190.16.1|Name=mRNA_P-wetherbeei_contig190.16.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
EYLSLQEHGTFEICELPAERRALGCRWVLKKKRNTDGSVVRFKARLVAQG
FNQQEGVDYVQEELSAPVASMDEVRTALAVGIYFDWEIEQMDIDTAYLNA
PVSEEIYMRPPKGFEVSGPDGKPMVWRLRRSLYGLRQS
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mRNA from alignment at P-wetherbeei_contig190:10549..10962-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig190.16.1 ID=mRNA_P-wetherbeei_contig190.16.1|Name=mRNA_P-wetherbeei_contig190.16.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig190:10549..10962- (Phaeothamnion wetherbeei SAG_119_79)
GAATATCTTTCGCTGCAAGAGCACGGCACTTTCGAGATCTGCGAACTACC GGCTGAACGAAGAGCGCTCGGCTGCCGGTGGGTGCTAAAGAAGAAACGCA ACACTGACGGCAGCGTCGTGCGGTTCAAGGCGCGGCTTGTGGCGCAAGGC TTCAACCAGCAAGAAGGAGTGGATTACGTGCAGGAAGAGCTGTCGGCGCC GGTCGCATCGATGGATGAGGTGCGAACGGCGTTGGCGGTTGGTATCTACT TCGACTGGGAGATCGAGCAGATGGACATCGACACTGCTTATCTCAACGCG CCCGTCTCCGAGGAAATATACATGCGGCCGCCAAAGGGCTTTGAGGTCTC TGGGCCTGACGGTAAGCCTATGGTCTGGCGGCTGCGGCGGTCTCTCTATG GGCTGCGGCAAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig190:10549..10962-

>mRNA_P-wetherbeei_contig190.16.1 ID=mRNA_P-wetherbeei_contig190.16.1|Name=mRNA_P-wetherbeei_contig190.16.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig190:10549..10962- (Phaeothamnion wetherbeei SAG_119_79)
GAATATCTTTCGCTGCAAGAGCACGGCACTTTCGAGATCTGCGAACTACC
GGCTGAACGAAGAGCGCTCGGCTGCCGGTGGGTGCTAAAGAAGAAACGCA
ACACTGACGGCAGCGTCGTGCGGTTCAAGGCGCGGCTTGTGGCGCAAGGC
TTCAACCAGCAAGAAGGAGTGGATTACGTGCAGGAAGAGCTGTCGGCGCC
GGTCGCATCGATGGATGAGGTGCGAACGGCGTTGGCGGTTGGTATCTACT
TCGACTGGGAGATCGAGCAGATGGACATCGACACTGCTTATCTCAACGCG
CCCGTCTCCGAGGAAATATACATGCGGCCGCCAAAGGGCTTTGAGGTCTC
TGGGCCTGACGGTAAGCCTATGGTCTGGCGGCTGCGGCGGTCTCTCTATG
GGCTGCGGCAAAGC
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