mRNA_P-wetherbeei_contig190.11.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig190.11.1
Unique NamemRNA_P-wetherbeei_contig190.11.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig190.11.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.630e-9
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 2 
Query:  557 DSWNTVDIIIIGILLSAFVARMAPGSDA--IFAAQLLLALAGPVLLWFRVLALAQINAALGPIVQTINLMMAEVLRFVLVLSVVMVGFTVAFHAIFNRRG 850
            D+WN +D   IG LL  FV RM    D   +F AQ   A + P LL+ R+L L+QI+A LGP+ Q I  M+++ LRF   +SVVM+ F +AFHA+F+  G
Sbjct: 1182 DTWNFLDTSTIGCLLVTFVFRMIALDDDFFLFHAQFFYAASAP-LLFSRLLVLSQIDATLGPMTQVIWRMISDTLRFSAFISVVMLSFALAFHAVFHTCG 1280
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig190.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHA0_ECTSI8.630e-946.00Transient Receptor Potential Channel. Partial sequ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig190contigP-wetherbeei_contig190:6892..9171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1626
Hectar predicted targeting categoryother localisation
Exons4
Cds size1329
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig190.11.1prot_P-wetherbeei_contig190.11.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig190 6898..8880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.316113-UTR-P-wetherbeei_contig190:6891..68971683186161.316113-UTR-P-wetherbeei_contig190:6891..6897Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig190 6892..6897 +
1683186161.3639362-UTR-P-wetherbeei_contig190:8880..91711683186161.3639362-UTR-P-wetherbeei_contig190:8880..9171Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig190 8881..9171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186161.3260462-CDS-P-wetherbeei_contig190:6897..72611683186161.3260462-CDS-P-wetherbeei_contig190:6897..7261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 6898..7261 +
1683186161.337645-CDS-P-wetherbeei_contig190:7396..75491683186161.337645-CDS-P-wetherbeei_contig190:7396..7549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 7397..7549 +
1683186161.3467803-CDS-P-wetherbeei_contig190:7897..81191683186161.3467803-CDS-P-wetherbeei_contig190:7897..8119Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 7898..8119 +
1683186161.3552072-CDS-P-wetherbeei_contig190:8290..88801683186161.3552072-CDS-P-wetherbeei_contig190:8290..8880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig190 8291..8880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig190.11.1

>prot_P-wetherbeei_contig190.11.1 ID=prot_P-wetherbeei_contig190.11.1|Name=mRNA_P-wetherbeei_contig190.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=443bp
MLSYGATPNAKFFGAYSQQEYAVTGNQLGKANAPLASFAASRRAAPIFTY
YRMYPHACQCPPRLSSRKSRSWRSWFSTPSSMPKSTRSCHASLSPAPLHG
PPTEGTVATTRPCGSCRRLWMNAWMHSPNAADASHRHDGRLGNCHIPLRA
RKGLAAEVNAAKEEDLFSWPPPLAARRNERVPRGLLEHCRHHYHRNSSLR
VCGAHGPRKRRHLRGTAAAGSRRPRPPMVPRAGFGADKRRARPHRPDYQP
DDGGSTAFRPGAFGRYGGLHGRLSRHLQPKRNNNVRPASNKRCFSPAVFE
GTSVIFWSPIARLWFARYICTIQELELCLNFPCLGRRIWPTRFVRFVSSS
TTVTSAVGWFGNMTPEQAKCCVRQGLRFHSYFLCRENETDYAYGYQSYGT
TLVTLYSAMLGDFDFTPFDTVTQGAVRFPCLSLFRPCRRARR*
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mRNA from alignment at P-wetherbeei_contig190:6892..9171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig190.11.1 ID=mRNA_P-wetherbeei_contig190.11.1|Name=mRNA_P-wetherbeei_contig190.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2280bp|location=Sequence derived from alignment at P-wetherbeei_contig190:6892..9171+ (Phaeothamnion wetherbeei SAG_119_79)
AGGCGCATGCTTTCCTATGGCGCAACCCCGAACGCCAAGTTCTTCGGTGC
TTACAGCCAACAGGAGTATGCGGTGACTGGCAACCAATTGGGAAAGGCAA
ACGCGCCGCTGGCCTCGTTCGCAGCGAGCAGGCGGGCGGCTCCTATATTC
ACTTACTACCGGATGTATCCGCATGCATGTCAGTGCCCGCCGCGCCTCTC
TTCTCGCAAAAGCAGAAGCTGGAGAAGCTGGTTCTCGACGCCATCGTCGA
TGCCGAAGTCAACTCGCTCATGCCATGCCTCATTATCTCCGGCGCCATTG
CACGGGCCGCCGACAGAGGGCACGGTTGCGACCACCAGGCCCTGCGGATC
CTGCAGGCGCTTGTGGATGAGTGAGGAGCGCTCGTTTGTAACTTTGACTG
CACCGTCGTCCGGCTCTTGAATGTTTCCTTCCACCTCTCCCGTACTGCAA
GCTCCTTCGAAGGACCTTACTTCATGCTCTCGCCGCCACCCGCCTCTAGC
CGCAGATGCTTGGATGCATTCTCCAAATGCTGCCGACGCGAGCCACCGAC
ATGATGGGCGGCTGGGCAACTGCCACATTCCTCTTCGAGCCCGAAAGGGT
CTTGCCGCAGAAGTGAATGCCGCCAAAGAGGAAGATTTATTTTCATGGCC
CCCTCCACGTAAGCGGCTGCCTCTACGGATCCCTTTTATTTCTTCCTCTT
GAGGGTGTTCCATTTTCATCTTCCAGCGTCTCCATTCGCCGCTTCTATTC
CTATTCCGTATTGCAGTAACGCTTAACTTTGTGAGGAGTGTGTGCTGCGT
GGAATGAATGCGCTTATCAAGAGGAGCTGTGGATGTCTGTTTCACCACTC
TGGGAAGAGGGGCTTATTCCCACTCTGTCAAGCGTTCGCCGCCCATCAAA
ATAGCTTAGGATCGATAGCAACACGGTGGGCCATTACCTCATAACTGCAG
CCACTGTCGGCTTTGCAATCCTTCCGTTTACCGAAATTCATCACTCTCTG
TGGCAGTGGCGGCACGAAGGAACGAACGCGTTCCTCGCGGACTCCTGGAA
CACTGTCGACATCATTATCATCGGAATTCTTCTCTCCGCGTTTGTGGCGC
GCATGGCCCCCGGAAGCGACGCCATCTTCGCGGCACAGCTGCTGCTGGCT
CTCGCCGGCCCCGTCCTCCTATGGTTCCGCGTGCTGGCTTTGGCGCAGAT
AAACGCCGCGCTCGGCCCCATCGTCCAGGTTTGTTCTAATGCGTTTTCAG
GGCAGCTTCTTTGGGGAACGCCCCAGATCCGATTCGAGAGGCTGAGTAGT
GGTCGTTTTAGGCCGAGAAACCCCAATTTCTGCTCCAACTCTGTGTAACC
TTCCGCGCTCCCTTTCTCGCGCCACACACTTTTTGCCCGGGACGTGCAGA
CTATCAACCTGATGATGGCGGAAGTACTGCGTTTCGTCCTGGTGCTTTCG
GTCGTTATGGTGGGCTTCACGGTCGCCTTTCACGCCATCTTCAACCGAAG
AGGAATAATAATGTAAGGCCGGCCTCCAATAAGCGATGCTTCTCTCCAGC
TGTGTTTGAAGGCACTTCTGTCATTTTTTGGTCGCCAATTGCAAGACTGT
GGTTTGCACGATACATTTGCACGATACAAGAGTTGGAACTATGTTTGAAC
TTCCCATGTCTAGGGCGACGAATCTGGCCAACAAGGTTCGTTCGATTCGT
TTCTTCGTCGACCACTGTAACGTCCGCGGTTGGCTGGTTTGGTAATATGA
CGCCGGAACAGGCTAAATGCTGCGTACGCCAAGGCCTCCGTTTCCACTCA
TACTTTTTGTGCAGGGAAAATGAGACGGACTATGCTTACGGCTACCAGTC
GTATGGTACTACACTAGTGACTCTCTACAGTGCAATGTTGGGCGATTTCG
ATTTCACGCCGTTCGACACCGTCACGCAGGGAGCGGTAAGGTTTCCTTGC
TTGTCTCTCTTTCGTCCCTGCAGGCGGGCACGGCGCTAATGTTCCTGTAC
CTCACCGTTTCCGCGGTGATGCTGTTATCAATGGACAGCTAAATTTTGTT
TTTTTAATTTATCGAGCGTTTGTTTTTGTTAACTAGACGGGCATGGGATT
CTGTGTTTCGCTTACTGACTGTGGGTGTGTTGAAGATGAGTCAGCCAGTA
TCCGCCGGTCGGGCTGTACCTAGCAGCTTGTCCGTTGGACCTTTACGTTC
CCGAATAATTGTACCGCTCTCTTCTCTTCCTTGAGAGCACCCTTGCTTTC
TGAGAGCCGCCCGGCAGCTGCCGTTGCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig190:6892..9171+

>mRNA_P-wetherbeei_contig190.11.1 ID=mRNA_P-wetherbeei_contig190.11.1|Name=mRNA_P-wetherbeei_contig190.11.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1329bp|location=Sequence derived from alignment at P-wetherbeei_contig190:6892..9171+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTCCTATGGCGCAACCCCGAACGCCAAGTTCTTCGGTGCTTACAG
CCAACAGGAGTATGCGGTGACTGGCAACCAATTGGGAAAGGCAAACGCGC
CGCTGGCCTCGTTCGCAGCGAGCAGGCGGGCGGCTCCTATATTCACTTAC
TACCGGATGTATCCGCATGCATGTCAGTGCCCGCCGCGCCTCTCTTCTCG
CAAAAGCAGAAGCTGGAGAAGCTGGTTCTCGACGCCATCGTCGATGCCGA
AGTCAACTCGCTCATGCCATGCCTCATTATCTCCGGCGCCATTGCACGGG
CCGCCGACAGAGGGCACGGTTGCGACCACCAGGCCCTGCGGATCCTGCAG
GCGCTTGTGGATGAATGCTTGGATGCATTCTCCAAATGCTGCCGACGCGA
GCCACCGACATGATGGGCGGCTGGGCAACTGCCACATTCCTCTTCGAGCC
CGAAAGGGTCTTGCCGCAGAAGTGAATGCCGCCAAAGAGGAAGATTTATT
TTCATGGCCCCCTCCACTGGCGGCACGAAGGAACGAACGCGTTCCTCGCG
GACTCCTGGAACACTGTCGACATCATTATCATCGGAATTCTTCTCTCCGC
GTTTGTGGCGCGCATGGCCCCCGGAAGCGACGCCATCTTCGCGGCACAGC
TGCTGCTGGCTCTCGCCGGCCCCGTCCTCCTATGGTTCCGCGTGCTGGCT
TTGGCGCAGATAAACGCCGCGCTCGGCCCCATCGTCCAGACTATCAACCT
GATGATGGCGGAAGTACTGCGTTTCGTCCTGGTGCTTTCGGTCGTTATGG
TGGGCTTCACGGTCGCCTTTCACGCCATCTTCAACCGAAGAGGAATAATA
ATGTAAGGCCGGCCTCCAATAAGCGATGCTTCTCTCCAGCTGTGTTTGAA
GGCACTTCTGTCATTTTTTGGTCGCCAATTGCAAGACTGTGGTTTGCACG
ATACATTTGCACGATACAAGAGTTGGAACTATGTTTGAACTTCCCATGTC
TAGGGCGACGAATCTGGCCAACAAGGTTCGTTCGATTCGTTTCTTCGTCG
ACCACTGTAACGTCCGCGGTTGGCTGGTTTGGTAATATGACGCCGGAACA
GGCTAAATGCTGCGTACGCCAAGGCCTCCGTTTCCACTCATACTTTTTGT
GCAGGGAAAATGAGACGGACTATGCTTACGGCTACCAGTCGTATGGTACT
ACACTAGTGACTCTCTACAGTGCAATGTTGGGCGATTTCGATTTCACGCC
GTTCGACACCGTCACGCAGGGAGCGGTAAGGTTTCCTTGCTTGTCTCTCT
TTCGTCCCTGCAGGCGGGCACGGCGCTAA
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