mRNA_P-wetherbeei_contig18994.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18994.1.1
Unique NamemRNA_P-wetherbeei_contig18994.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A7C3JR16_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3JR16_9PROT)

HSP 1 Score: 302 bits (774), Expect = 1.110e-100
Identity = 155/245 (63.27%), Postives = 192/245 (78.37%), Query Frame = 1
Query:   34 ELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            ELAG++ALVTG ++NIGRAI+LALA  GAAVAVN   SR++AE V +EIR+AGG AEVF+ADI+DA AV+AM EGV+KRFGR+DILVLNAS R E  F ++++E+WR  +SITLDG+F+C +ACLPSM+    G+I+TLGG   L G   + H + AK+GLVG+TRALA E  + GIRVNCV+PG++NT R A RSA PD K  +P GR GE EEIA  VRFLCGPG  FI+GQTLHV+GG  MF
Sbjct:    5 ELAGKVALVTGASRNIGRAIALALAAGGAAVAVNARTSRDEAETVAQEIRSAGGQAEVFMADIADAGAVKAMVEGVIKRFGRVDILVLNASVRSEKPFTELSYEEWRVPLSITLDGAFYCTQACLPSMIKAGGGSIVTLGGQVALSGAKNRVHGSVAKHGLVGMTRALAREFGDRGIRVNCVAPGTMNTARAAGRSARPDAKSAVPAGRAGEPEEIATTVRFLCGPGASFISGQTLHVNGGQTMF 249          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A1F4DLW1_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DLW1_9PROT)

HSP 1 Score: 302 bits (773), Expect = 1.640e-100
Identity = 155/245 (63.27%), Postives = 191/245 (77.96%), Query Frame = 1
Query:   34 ELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            ELAG++ALVTG ++NIGRAI+LALA  GAAVAVN   SREDAE V  E+RAAGG AEVF+ADI+ A+AV AM EGV++RFGRIDILVLNAS R E  F +M++++WR  ++ITLDG+FHC KACLP+M+    G+I+TLGG   L G  R+ H + AK+GLVG+TRALA E  + GIRVNCV+PG++NT R A RSA PD    +PLGR G+ EEIA+ VRFLCGPG  FI GQT+HV+GG  MF
Sbjct:    6 ELAGKVALVTGASRNIGRAIALALATGGAAVAVNARTSREDAEKVAHEVRAAGGQAEVFMADIAQASAVNAMVEGVIRRFGRIDILVLNASVRSEKPFTEMSYDEWRIPLAITLDGAFHCTKACLPAMIEAGGGSIVTLGGQMALSGAKRRVHGSVAKHGLVGMTRALAREFGDRGIRVNCVAPGTMNTPRAAGRSARPDAASMVPLGRPGDPEEIASTVRFLCGPGASFINGQTIHVNGGQMMF 250          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A1F4A5U2_9PROT (Short-chain dehydrogenase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A5U2_9PROT)

HSP 1 Score: 291 bits (746), Expect = 2.070e-96
Identity = 151/249 (60.64%), Postives = 190/249 (76.31%), Query Frame = 1
Query:   22 AEGRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            A  +ELAG++ALVTG  +NIGRAI+LALA+ GAAVAVNT +SRED +  V+ IRAAGG AEVF+ADI+D AAVR M +G+VKRFGR+D LVLNAS R E  F ++++E+WRT +SITLDG+F+  KAC+P M+    G+I+TLGG   L G  R+ H + AK+GLVG TRA+A ELA  GIR NCV+PG++NT R   R+A PD    +P+GR GE+EEIA  VRFLCGPG  +ITGQTL V+GG  MF
Sbjct:    2 ATSKELAGKVALVTGAGRNIGRAIALALAEGGAAVAVNTRKSREDVDGTVQAIRAAGGQAEVFMADIADGAAVRTMVDGIVKRFGRVDFLVLNASVRTERPFLELSYEEWRTPLSITLDGAFYLAKACIPEMIKAGGGSIVTLGGMVSLSGAARRVHGSVAKHGLVGFTRAIARELAPQGIRANCVAPGTMNTVRANARAARPDVSKTVPMGRMGEAEEIATTVRFLCGPGASYITGQTLQVNGGQMMF 250          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A0S8BRE0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8BRE0_9PROT)

HSP 1 Score: 287 bits (735), Expect = 1.110e-94
Identity = 148/254 (58.27%), Postives = 190/254 (74.80%), Query Frame = 1
Query:    7 IPGLPAEGRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            +P   A   ELAG++AL+TG ++NIGRA +LALA AGAAVAVNT  SR+DAE VV+EI AAGG AE+++ADI+D  A +AM E + KRFGR+DILVLNAS R E  F ++T+E+WR  +SITLDG+F+  +AC+P MLA   G+I+TLGG   L G   + H + AK+GLVG+TRALA E  + GIR NCV+PG++NT R A R+  PD    +PLGR GE+EE+A  VRFLCGPG  FI+GQT+HV+GG  MF
Sbjct:    1 MPPTAAGNAELAGKVALITGASRNIGRATALALADAGAAVAVNTRSSRQDAEKVVEEIGAAGGQAELYVADIADEKAAKAMVEAIAKRFGRVDILVLNASVRSEKPFTELTYEEWRLPLSITLDGAFYLAQACIPHMLAAGGGSIVTLGGQVALSGAKNRVHGSVAKHGLVGMTRALAREFGDRGIRANCVAPGTMNTTRAAGRAPRPDAAKVVPLGRLGEAEEVATTVRFLCGPGASFISGQTIHVNGGQMMF 254          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A7C2Y6D6_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2Y6D6_9PROT)

HSP 1 Score: 286 bits (732), Expect = 3.270e-94
Identity = 152/249 (61.04%), Postives = 189/249 (75.90%), Query Frame = 1
Query:   22 AEGRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            A+ RELAG++ALVTG ++NIGRAI+LALA+ GAAVAVN   SR+DAE V  EIRAAGG AEV +ADI+DA AV AM   ++ RFGRID LVLNAS RRE  F++M+FE+WR+ +++TLDG+FHC KACLP+M+    G+I+TLGG   L G   + H +  K+GL G+TRALA EL E GIRVNCV+PG +NT R A RSA PD    +PLGRR E EE+AAVVRFLCGPG   ++GQ ++V GG  MF
Sbjct:    8 ADTRELAGKVALVTGASRNIGRAIALALAQGGAAVAVNARTSRDDAEKVAGEIRAAGGRAEVCMADIADAGAVDAMVRAILDRFGRIDCLVLNASVRRETPFREMSFEEWRSLLAVTLDGAFHCTKACLPAMIDAGGGSIVTLGGMTALSGARGRVHGSVGKHGLYGMTRALARELGEHGIRVNCVAPGQMNTARAAGRSARPD-AALVPLGRRVEPEEVAAVVRFLCGPGASMVSGQLVYVDGGQMMF 255          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A3N5P791_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5P791_9PROT)

HSP 1 Score: 282 bits (721), Expect = 1.580e-92
Identity = 146/247 (59.11%), Postives = 190/247 (76.92%), Query Frame = 1
Query:   28 GRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            G ELAG++ALVTGGA+NIG A S ALA+ GAAVAVNT  S+ED E +V+EIR+AGG AE+++ADI++A AV++M + V++RFG++DILVLNAS R+E  F D++FE+WR  M I+LDGSFH +KACLPSML    GNI+ LGG   L G   + H + AK+G+VG+TRALA E A+  +RVNCV+PG ++T+R A R+   DPKG IP+GR GE  EIA  VRFLCGPG  +ITGQ L+V+GG  M+
Sbjct:   11 GNELAGKVALVTGGARNIGAATSAALAQGGAAVAVNTRASKEDGERIVQEIRSAGGQAELYLADIANADAVKSMVDAVIQRFGKVDILVLNASVRKETPFLDISFEEWRGIMGISLDGSFHLVKACLPSMLKAGGGNIVMLGGTQALSGARNRVHGSVAKHGMVGMTRALAREFADRNVRVNCVAPGRMDTQRAAGRTVGGDPKG-IPMGRLGEPREIADTVRFLCGPGASYITGQLLYVNGGLVMY 256          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A521WCF3_9CHLR (SDR family oxidoreductase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A521WCF3_9CHLR)

HSP 1 Score: 278 bits (710), Expect = 7.370e-91
Identity = 147/252 (58.33%), Postives = 189/252 (75.00%), Query Frame = 1
Query:   13 GLPAEGRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            G+   G ELAG++AL+TG ++NIGRA +LALA  GAA+AVNT  SRE A  VV+EIRAAGG  E+F+ADI+D +AV+AM EG++KRFGRIDILVLNAS R E  F ++++E+WR  ++IT DG+F C +ACLPSML +  G IITLGG   L G   + H + AK+GLVG+TRALA E  + GIR NC++PG++NT R   R+  P P   IPLGR GE+EEIA+VVRFL GPG  ++TGQT+ V+GG  MF
Sbjct:    6 GVSGPGNELAGKVALITGASRNIGRATALALAAGGAAIAVNTRASREAAGKVVEEIRAAGGQTELFMADIADGSAVKAMAEGILKRFGRIDILVLNASVRTERPFLELSYEEWRQPLAITHDGAFFCAQACLPSMLEHGGGAIITLGGMQSLAGSKHRVHGSVAKHGLVGMTRALAREFGDRGIRANCIAPGTMNTTRGPGRAPRPAPTN-IPLGRYGEAEEIASVVRFLAGPGASYLTGQTIQVNGGQMMF 256          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A3N5W9J9_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5W9J9_9PROT)

HSP 1 Score: 275 bits (704), Expect = 4.750e-90
Identity = 145/249 (58.23%), Postives = 187/249 (75.10%), Query Frame = 1
Query:   22 AEGRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            A G+ELAG++ALVTG A+NIGRAI+ ALA++GA VAVN   ++ DAEAV +EIRAAGG A+VF+ADI+DA AV AM   +VKR G++D+L+LNAS R+E  F DM+FE+WR+ ++ITLDGSFHC KACLPSM+A   G+I+TLGG   L G  R+ H +  K+GL G+TRALA EL E  I VNCV+PG +NT R A RSA  D    +P+GRR E EE+AA+VR+LC P    ++GQ ++V GG  MF
Sbjct:    2 AAGKELAGKVALVTGAARNIGRAIAQALAESGATVAVNARTAQADAEAVAEEIRAAGGKADVFMADIADAGAVHAMVGDIVKRHGKVDLLILNASIRKETAFIDMSFEEWRSLLAITLDGSFHCTKACLPSMIAAGGGSIVTLGGMTALSGAKRRVHGSVGKHGLWGMTRALAKELGEYHINVNCVAPGQMNTARAAGRSARAD-ASNVPMGRRAEPEEVAAMVRYLCTPAAAMVSGQLIYVDGGQQMF 249          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A7X1TVV3_9PROT (SDR family oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1TVV3_9PROT)

HSP 1 Score: 279 bits (713), Expect = 5.790e-90
Identity = 148/247 (59.92%), Postives = 189/247 (76.52%), Query Frame = 1
Query:   28 GRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            G ELAG++ALVTGGA+NIG A SLALA+AGAAVAVNT +SREDA+ VV EIR  GG AEVF+ADI+D  AV+ M +GV++RFG++DILVLNAS R+E  F +++ E+WR+ M+I+LDGSFH  +ACLPSML    G+I+TLGG   L G +R+ H + AK+G++GLTRALA E AE  IRVNCVSPG ++T R A R+   D KG IP+ R G+  E+A  VRFLCGPG  +ITGQ L+ +GG  M+
Sbjct:  107 GNELAGKVALVTGGARNIGAATSLALAQAGAAVAVNTRKSREDADRVVAEIRENGGQAEVFMADIADPDAVKRMVDGVIERFGKVDILVLNASVRKETPFLEISAEEWRSIMAISLDGSFHLAQACLPSMLEAGGGSIVTLGGTQALSGASRRVHGSVAKHGMLGLTRALAREFAEQNIRVNCVSPGRMDTTRAAGRTVRGDAKG-IPMARLGDPREVADTVRFLCGPGASYITGQLLYANGGLVMY 352          
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Match: A0A1F4BKN5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BKN5_9PROT)

HSP 1 Score: 273 bits (698), Expect = 3.740e-89
Identity = 147/245 (60.00%), Postives = 179/245 (73.06%), Query Frame = 1
Query:   34 ELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSREDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLNASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITLGGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINTERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVSGGAFMF 768
            ELAG++ALVTG ++NIGR+I+LALA AGAAVAVN   S+EDA  V +EIRAAGG AE ++ADI D  AV AM +GVVKRFGR+D LVLNAS R+E  F DM+F++W++  S+TLDGSFHC+KACLP ++    G I+TLGG   L G  R+ H +  K GL G+TRALA EL E  IRVNCVSPG +NT R + RSA PD    +PLGRR E  EIA  VRFLCGPG   I+GQ ++V GG   F
Sbjct:    5 ELAGKVALVTGASRNIGRSIALALAAAGAAVAVNARTSKEDAGKVAQEIRAAGGQAEAYLADIVDPKAVNAMVDGVVKRFGRLDALVLNASVRKETPFADMSFDEWKSLTSVTLDGSFHCVKACLPHLIKAGGGAIVTLGGMTALSGAKRRVHGSVGKFGLYGMTRALAKELGEHQIRVNCVSPGQMNTARASDRSARPD-VSNVPLGRRVEPGEIADAVRFLCGPGSRMISGQLIYVDGGQQQF 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3JR16_9PROT1.110e-10063.27SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A1F4DLW1_9PROT1.640e-10063.27Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A1F4A5U2_9PROT2.070e-9660.64Short-chain dehydrogenase n=1 Tax=Betaproteobacter... [more]
A0A0S8BRE0_9PROT1.110e-9458.27Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C2Y6D6_9PROT3.270e-9461.04SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A3N5P791_9PROT1.580e-9259.11SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A521WCF3_9CHLR7.370e-9158.33SDR family oxidoreductase n=1 Tax=Dehalococcoidia ... [more]
A0A3N5W9J9_9PROT4.750e-9058.23SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A7X1TVV3_9PROT5.790e-9059.92SDR family oxidoreductase n=1 Tax=Betaproteobacter... [more]
A0A1F4BKN5_9PROT3.740e-8960.00Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18994contigP-wetherbeei_contig18994:150..923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1298867.AUES01000046_gene4089
PFAMsadh_short_C2
Model size774
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.67e-79
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1R3U8@1224|Proteobacteria,2U1SI@28211|Alphaproteobacteria,3JXX5@41294|Bradyrhizobiaceae
DescriptionKR domain
Cds size774
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.7858303-CDS-P-wetherbeei_contig18994:149..9231683186160.7858303-CDS-P-wetherbeei_contig18994:149..923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18994 150..923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18994.1.1prot_P-wetherbeei_contig18994.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18994 150..923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18994.1.1

>prot_P-wetherbeei_contig18994.1.1 ID=prot_P-wetherbeei_contig18994.1.1|Name=mRNA_P-wetherbeei_contig18994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MAIPGLPAEGRELAGQIALVTGGAKNIGRAISLALAKAGAAVAVNTLRSR
EDAEAVVKEIRAAGGDAEVFIADISDAAAVRAMGEGVVKRFGRIDILVLN
ASQRREILFKDMTFEDWRTTMSITLDGSFHCIKACLPSMLANKSGNIITL
GGDAVLLGGNRKAHNTTAKNGLVGLTRALANELAEDGIRVNCVSPGSINT
ERPAHRSALPDPKGKIPLGRRGESEEIAAVVRFLCGPGGGFITGQTLHVS
GGAFMFA*
back to top

mRNA from alignment at P-wetherbeei_contig18994:150..923-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18994.1.1 ID=mRNA_P-wetherbeei_contig18994.1.1|Name=mRNA_P-wetherbeei_contig18994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig18994:150..923- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAATACCGGGACTACCCGCTGAAGGCCGCGAGCTCGCCGGCCAGAT CGCGCTCGTCACGGGCGGTGCGAAAAATATCGGACGCGCGATCTCGCTGG CACTCGCCAAGGCAGGCGCGGCCGTTGCGGTCAACACGCTGCGCTCGCGT GAAGATGCCGAGGCGGTGGTAAAGGAGATCCGTGCCGCGGGCGGCGACGC CGAGGTTTTCATCGCCGACATCTCGGATGCTGCCGCGGTGCGCGCGATGG GCGAGGGCGTCGTCAAGCGCTTCGGCAGGATCGACATCCTCGTCCTCAAC GCTTCCCAGCGCCGCGAAATCCTTTTCAAGGACATGACGTTCGAAGATTG GCGCACCACCATGTCGATCACGCTCGACGGCTCGTTTCACTGCATCAAGG CCTGCCTGCCGTCCATGCTCGCAAATAAAAGCGGCAACATCATTACGCTC GGCGGCGACGCAGTATTGCTTGGCGGCAATCGCAAAGCGCACAACACCAC GGCGAAGAACGGGCTTGTCGGCCTCACGCGTGCGCTCGCGAACGAACTCG CCGAGGACGGCATCCGCGTGAACTGCGTGTCGCCCGGCAGTATCAACACC GAGCGGCCTGCCCATCGCAGCGCGCTCCCGGACCCCAAAGGCAAGATCCC GCTGGGGCGCCGCGGTGAGTCGGAAGAAATCGCCGCGGTAGTGCGCTTCC TGTGCGGCCCGGGCGGCGGCTTCATCACCGGCCAGACCCTGCACGTGAGC GGCGGCGCTTTTATGTTCGCTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18994:150..923-

>mRNA_P-wetherbeei_contig18994.1.1 ID=mRNA_P-wetherbeei_contig18994.1.1|Name=mRNA_P-wetherbeei_contig18994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig18994:150..923- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAATACCGGGACTACCCGCTGAAGGCCGCGAGCTCGCCGGCCAGAT
CGCGCTCGTCACGGGCGGTGCGAAAAATATCGGACGCGCGATCTCGCTGG
CACTCGCCAAGGCAGGCGCGGCCGTTGCGGTCAACACGCTGCGCTCGCGT
GAAGATGCCGAGGCGGTGGTAAAGGAGATCCGTGCCGCGGGCGGCGACGC
CGAGGTTTTCATCGCCGACATCTCGGATGCTGCCGCGGTGCGCGCGATGG
GCGAGGGCGTCGTCAAGCGCTTCGGCAGGATCGACATCCTCGTCCTCAAC
GCTTCCCAGCGCCGCGAAATCCTTTTCAAGGACATGACGTTCGAAGATTG
GCGCACCACCATGTCGATCACGCTCGACGGCTCGTTTCACTGCATCAAGG
CCTGCCTGCCGTCCATGCTCGCAAATAAAAGCGGCAACATCATTACGCTC
GGCGGCGACGCAGTATTGCTTGGCGGCAATCGCAAAGCGCACAACACCAC
GGCGAAGAACGGGCTTGTCGGCCTCACGCGTGCGCTCGCGAACGAACTCG
CCGAGGACGGCATCCGCGTGAACTGCGTGTCGCCCGGCAGTATCAACACC
GAGCGGCCTGCCCATCGCAGCGCGCTCCCGGACCCCAAAGGCAAGATCCC
GCTGGGGCGCCGCGGTGAGTCGGAAGAAATCGCCGCGGTAGTGCGCTTCC
TGTGCGGCCCGGGCGGCGGCTTCATCACCGGCCAGACCCTGCACGTGAGC
GGCGGCGCTTTTATGTTCGCTTAA
back to top