mRNA_P-wetherbeei_contig1898.2.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1898.2.4
Unique NamemRNA_P-wetherbeei_contig1898.2.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: H3G6N2_PHYRM (Glycos_transf_1 domain-containing protein n=6 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6N2_PHYRM)

HSP 1 Score: 270 bits (691), Expect = 9.600e-86
Identity = 141/269 (52.42%), Postives = 181/269 (67.29%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGA---DFDSQVAALARQVTGREPPELPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSPARVAE 798
            +H++WVPT F  + F +GGV P  ++V+ E VD AFFDP  +  P  L       L           V+LS+FKWEERKAW VLLTAY++AF A  +   V LV+LTN YH   +   DF +++   A +  G++  ELP + +L   +PQ  MPALY +ANAFVLPSRGEGWGRPHVEAM+M  PV+AT WSG TEYM +EN+YP+ IDGL+E+  GAFRGH+WA+PSVEHL  L+  V+E P EAA +G +AR DMV +YSP  V E
Sbjct:  133 MHEIWVPTKFQEKVFVDGGVRPEAVKVVPEVVDVAFFDPEKVETPYDLASETQFEL------TEHTTVYLSIFKWEERKAWKVLLTAYFQAFEAHED---VVLVLLTNGYHSSSSSAGDFLNKIEEFAVEAVGKKLHELPHLHVLPPHIPQEAMPALYKAANAFVLPSRGEGWGRPHVEAMAMERPVIATFWSGTTEYMTEENSYPLKIDGLIEITEGAFRGHMWADPSVEHLKELLLRVKEFPEEAAGKGKQAREDMVAKYSPEIVGE 392          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A3F2RZQ4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZQ4_9STRA)

HSP 1 Score: 263 bits (672), Expect = 3.730e-84
Identity = 137/264 (51.89%), Postives = 178/264 (67.42%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGA---DFDSQVAALARQVTGREPPELPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSP 783
            + ++WVPT F  + F +GGV P  ++V+ E VD  FFDP  + +P  L          +   +    V+LS+FKWEERKAW VLLTAY++AF+A  +   V LV+LTN YH   +   DF + +   A +  G+   ELP V +L   +PQ  MP+LY +ANAFVLPSRGEGWGRPHVEAM+M  PV+AT WSG TEYM +EN+YP+ IDGLVE+  GAFRGH WA+PSVEHL  LM  V+++P EA ++G RAR DMV +YSP
Sbjct:   18 MDEIWVPTKFQEKVFVDGGVRPESVKVVPEVVDVHFFDPEKVTDPYDLAS------ETSFDFSESTTVYLSIFKWEERKAWRVLLTAYFQAFSAEDD---VVLVLLTNGYHSTSSSAKDFMNVIEEFALEAVGKPLNELPQVHVLPPHIPQDSMPSLYKAANAFVLPSRGEGWGRPHVEAMAMERPVIATFWSGTTEYMTEENSYPLKIDGLVEITEGAFRGHKWADPSVEHLKELMLRVKKHPEEAVSKGKRAREDMVAKYSP 272          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A2G9HLX9_9LAMI (Mannosylfructose-phosphate synthase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HLX9_9LAMI)

HSP 1 Score: 266 bits (681), Expect = 3.960e-83
Identity = 142/274 (51.82%), Postives = 188/274 (68.61%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSM-LPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGADFDSQVAALARQVTGREPPEL-PPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSPARVAEDLARLL 816
            + +VWVPT FHV TF + G +P K+R + +PVD  FFDP+ + +PL L  +G S+ L      +   FVFLS+FKWE RK WDVLL +Y + F+A  N   VAL +LTNAYH D  DF +++    +     EP  +  P+ ++   + Q  +P LY +ANAFVLPSRGEGWGRP VEAM+M+LPV+ TNWSGPTEY+ DEN+YP++ +G+ EVK G F+GHLWAEPSV+ L  LMRHV  +P EA  +G +AR DM+RR+SP  V ED+  LL
Sbjct:  218 MDQVWVPTDFHVDTFIQSGFDPMKVRKIVQPVDLEFFDPSKV-KPLDLASVGSSLVLGSDNLNSKNRFVFLSIFKWEYRKGWDVLLRSYLKEFSAADN---VALYMLTNAYHSD-RDFGNKIVEYVKDSDLEEPVNVWAPIYVVGDHIAQVDLPRLYMAANAFVLPSRGEGWGRPIVEAMAMSLPVITTNWSGPTEYLTDENSYPLSFEGMSEVKEGPFKGHLWAEPSVDKLQLLMRHVMSDPDEAKHKGLQARVDMMRRFSPEIVGEDIINLL 486          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A1V9Z8K6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8K6_9STRA)

HSP 1 Score: 263 bits (672), Expect = 4.490e-83
Identity = 141/261 (54.02%), Postives = 175/261 (67.05%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGADFDSQVAALARQVTGREPPELPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSP 783
            + +VWVPT F    F  GGV  AKL V+ E VD +FFDPA  A  L +  L  S             VF+SVFKWE+RK W +LL AY+ AFA   N   V LV+LTNAYH   +DF   + + A    GR   +LP V +L   +PQ  +P+LY +A AFVLPSRGEGWGRPHVEAM+MALPV+AT WSGPTEYM D N+YP+ +DGLV ++ GAF+GHLWAEPSV+HL  L+ HV E+  EAAA+G +AR DMV +Y+P
Sbjct:  118 MDEVWVPTQFQKDVFMAGGVPEAKLVVVPEAVDVSFFDPAT-ATALEIPGLDASTT-----------VFVSVFKWEDRKGWKILLRAYFAAFARDSN---VMLVLLTNAYHSS-SDFQDMIHSFALDALGRTLDDLPRVHVLEPNLPQGQLPSLYKAATAFVLPSRGEGWGRPHVEAMAMALPVIATFWSGPTEYMTDANSYPLRVDGLVPIQEGAFKGHLWAEPSVDHLTELLLHVHEHKEEAAAKGVQARTDMVAKYAP 362          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A4D9D255_9STRA (Glycos_transf_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D255_9STRA)

HSP 1 Score: 259 bits (663), Expect = 4.540e-81
Identity = 140/272 (51.47%), Postives = 185/272 (68.01%), Query Frame = 1
Query:    7 HKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGADFDSQVAALARQVTGRE--PPELPPVRLLSRVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSPARVAEDLARLL 816
            H VWVPTAF  R F EGGVE  +++V+GEPVDT FF P     P+ L     S LPP+   +   F+FLS+FK+EERK +D+LL AY+ AFA G     VAL++LTNAYH    DF++ V A+A++    +  P ELPPV ++S      + ALY +A+ FVLPSRGEGWGRPHVEAM+MA PV+ATNWSGPTE+M   N+YP+ I+GL EV+ G F+GH WA PS+ HL+ L+++   +  E   +G  AR DMVRR+SP  + E++ R L
Sbjct:  155 HTVWVPTAFQKRVFVEGGVEAERIQVIGEPVDTDFFSPE---NPVLLSLPPSSGLPPSLPPS--SFLFLSIFKFEERKGFDLLLRAYFEAFAPGEE--DVALLLLTNAYHSSD-DFETPVKAIAKEYFPEKKYPEELPPVHIMSGATALQLLALYQAADVFVLPSRGEGWGRPHVEAMAMAKPVIATNWSGPTEFMTPTNSYPLHIEGLEEVRNGPFKGHRWASPSLSHLISLLQYTFSHQEEGREKGREARRDMVRRFSPEVMGEEVRRHL 418          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A329SPH1_9STRA (Glycos_transf_1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SPH1_9STRA)

HSP 1 Score: 260 bits (664), Expect = 9.090e-81
Identity = 135/270 (50.00%), Postives = 183/270 (67.78%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLV-QLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGA---DFDSQVAALARQVTGREPPELPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSPARVAE 798
            ++++WVPT F  + F +GGV P  ++V+ E VD  FFDP  + +   LV +    M         +  V+LS+FKWEERKAW VLL AY++AF A  +   V LV+LTN YH   A   DF + +   A +  G++  ELP + +L   +PQ +MP+LY +ANAFVLPSRGEGWGRPHVEAM+M  PV+AT WSG TEYM ++N+YP+ IDGL+E+  GAFRGH+WA+PSVEHL  L+  ++E+P EA A+G +AR DMV +YSP  + E
Sbjct:  193 MNEIWVPTKFQEKIFVDGGVRPEAVKVVPEVVDVDFFDPDKVQQVYDLVSETAFDMTE-------KTTVYLSIFKWEERKAWRVLLKAYFQAFKAEDD---VVLVLLTNGYHTTSASADDFMNVIDKFAVEAVGKKLDELPHIHVLPPHIPQEVMPSLYKAANAFVLPSRGEGWGRPHVEAMAMERPVIATFWSGTTEYMTEKNSYPLKIDGLIEITDGAFRGHMWADPSVEHLKELLLRIKEHPKEAVAKGKQARKDMVDKYSPEIIGE 452          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A6I9T1W8_SESIN (uncharacterized protein LOC105161009 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9T1W8_SESIN)

HSP 1 Score: 260 bits (665), Expect = 9.850e-81
Identity = 138/269 (51.30%), Postives = 180/269 (66.91%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGADFDSQVAALARQVTGREPPE-LPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSPARVAEDL 804
            +  VWVPT FHV TF + G++P K+R + +PVD  FFDP  + EPL L  +G  +L    +   + FVFLSVFKWE RK WDVLL +Y + F+   +   VAL +LTNAYH D  DF +++          +P     P+ ++   + Q  +P LY SAN FVLPSRGEGWGRP VEAM+M+LPV+ TNWSGPTEY+ DEN+YP+ ++G+ EVK G F+GHLWAEPS + L  LMRHV  N  EA  +G +AR DM+RR+SP  VAED+
Sbjct:  219 MDHVWVPTDFHVNTFRQSGIDPIKVRKVVQPVDLEFFDPFKV-EPLDLASIGSLVLGLDKSNLRKQFVFLSVFKWEYRKGWDVLLRSYLQEFSGVDD---VALYLLTNAYHTD-RDFANKIVEYVEDSDLEKPANGWAPIYVIDGHIAQIDLPGLYVSANVFVLPSRGEGWGRPIVEAMAMSLPVITTNWSGPTEYLTDENSYPLPVEGMTEVKEGPFKGHLWAEPSADKLQLLMRHVMSNHDEAKTKGMKARLDMMRRFSPEIVAEDI 482          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A485L3T5_9STRA (Aste57867_15175 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3T5_9STRA)

HSP 1 Score: 259 bits (661), Expect = 9.850e-81
Identity = 138/261 (52.87%), Postives = 178/261 (68.20%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGADFDSQVAALARQVTGREPPELPPVRLL-SRVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSP 783
            + ++WVPT F  + F  GGV  +KL V+ E VD AFFDP+ + E + L  +G               VFLS+FKWEERK W  LL AY+ AF    NA PV LV+LTNAYH   +DF++ VA  A    GR    LP + +L S +PQ+ +P+LY +A AFVLPSRGEGWGRPHVEAMSM LP++AT WSG TE+M D N+YP++IDGLV ++TGAF+GHLWA+PS  HL  L+R V E+PAEA  +G +AR DM+ R++P
Sbjct:  174 MDEIWVPTLFSKKVFEAGGVPASKLVVVPEAVDVAFFDPSTV-EAMALPDVGDDTT-----------VFLSIFKWEERKGWKTLLKAYFAAFT---NADPVVLVLLTNAYHST-SDFNNLVARYALDSLGRSLDALPRIHILPSDLPQTDLPSLYKAATAFVLPSRGEGWGRPHVEAMSMELPIIATFWSGSTEFMTDANSYPLSIDGLVPIETGAFKGHLWADPSPTHLQELLRRVIEHPAEAKKKGQQARQDMITRFAP 418          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: A0A2D4CAR7_PYTIN (Glycos_transf_1 domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAR7_PYTIN)

HSP 1 Score: 259 bits (663), Expect = 1.910e-80
Identity = 137/264 (51.89%), Postives = 174/264 (65.91%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYH---DDGADFDSQVAALARQVTGREPPELPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSP 783
            + ++WVPT F  + F +GGV+  +L VL E VD  FFDP  +  P  L     S      A   +  +FLS+FKWEERKAW +LL AY++AF   +    V L ILT+ YH   D    F  +V     Q  G+   ELP V ++S  +PQ  +PALY +A AFVLPSRGEGWGRPHVEAMSM LP++AT WSG TEYM +EN+YP+ IDGLVE+K GAFRGH WAEPS  HL+ L++ VR +P EA A+G +ARADM+ +YSP
Sbjct:  205 MDEIWVPTRFQEKIFRDGGVDAKRLHVLPEAVDVDFFDPDRVETPYDLASEITSR-----AITSKTTIFLSIFKWEERKAWRILLKAYFQAF---KKEDDVVLAILTSGYHSSADTAKAFTDKVQTFVSQELGQSLDELPFVHMVSPNLPQHQLPALYKAATAFVLPSRGEGWGRPHVEAMSMELPIIATFWSGTTEYMTEENSYPLNIDGLVEIKEGAFRGHKWAEPSTSHLIELLQRVRSHPEEARAKGKQARADMIAKYSP 460          
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Match: D0MZM0_PHYIT (Glycos_transf_1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZM0_PHYIT)

HSP 1 Score: 258 bits (658), Expect = 3.660e-80
Identity = 134/269 (49.81%), Postives = 180/269 (66.91%), Query Frame = 1
Query:    4 LHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLVQLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAWPVALVILTNAYHDDGA---DFDSQVAALARQVTGREPPELPPVRLLS-RVPQSLMPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDENAYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGARARADMVRRYSPARVAE 798
            + ++WVPT F  + F +GGV P  ++V+ E VD  FFDP  + +   L       L        +  V+LS+FKWEERKAW VLL AY++AF A  +   V LV+LTN YH   +   DF + +   A +  G++  ELP + +L   +PQ  MPALY +ANAFVLPSRGEGWGRPHVEAM+M  PV+AT WSG TEYM +EN+YP+ IDGL+E+K GAF+GH+WA+PSV+HL  L+  ++E+P EA A+G +AR DMV +YSP  + E
Sbjct:  168 MDEIWVPTKFQEKIFVDGGVRPEAVKVVPEVVDVDFFDPEKVDQVYDLASETAFDL------TEKTTVYLSIFKWEERKAWRVLLKAYFQAFTASDD---VVLVLLTNGYHTTSSSADDFMNVIEEFALEAVGKKLLELPHIHVLPPHIPQEDMPALYKAANAFVLPSRGEGWGRPHVEAMAMERPVIATFWSGTTEYMTEENSYPLNIDGLIEIKEGAFKGHMWADPSVKHLKELLLRIKEHPKEAVAKGKQARKDMVDKYSPEIIGE 427          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1898.2.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3G6N2_PHYRM9.600e-8652.42Glycos_transf_1 domain-containing protein n=6 Tax=... [more]
A0A3F2RZQ4_9STRA3.730e-8451.89Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A2G9HLX9_9LAMI3.960e-8351.82Mannosylfructose-phosphate synthase n=1 Tax=Handro... [more]
A0A1V9Z8K6_9STRA4.490e-8354.02Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A4D9D255_9STRA4.540e-8151.47Glycos_transf_1 domain-containing protein n=1 Tax=... [more]
A0A329SPH1_9STRA9.090e-8150.00Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
A0A6I9T1W8_SESIN9.850e-8151.30uncharacterized protein LOC105161009 n=1 Tax=Sesam... [more]
A0A485L3T5_9STRA9.850e-8152.87Aste57867_15175 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4CAR7_PYTIN1.910e-8051.89Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
D0MZM0_PHYIT3.660e-8049.81Glycos_transf_1 domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1898contigP-wetherbeei_contig1898:4731..6345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra46978
PFAMsGlycos_transf_1
Model size816
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.57e-86
EggNOG OGsCOG0438@1|root,2QQT3@2759|Eukaryota,3QEIS@4776|Peronosporales
DescriptionGlycosyl transferases group 1
Cds size816
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.59215-CDS-P-wetherbeei_contig1898:4730..49801683186160.59215-CDS-P-wetherbeei_contig1898:4730..4980Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 4731..4980 -
1683186160.6135042-CDS-P-wetherbeei_contig1898:5230..55131683186160.6135042-CDS-P-wetherbeei_contig1898:5230..5513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 5231..5513 -
1683186160.6240208-CDS-P-wetherbeei_contig1898:5753..58111683186160.6240208-CDS-P-wetherbeei_contig1898:5753..5811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 5754..5811 -
1683186160.6335301-CDS-P-wetherbeei_contig1898:6060..60931683186160.6335301-CDS-P-wetherbeei_contig1898:6060..6093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 6061..6093 -
1683186160.6428838-CDS-P-wetherbeei_contig1898:6153..63451683186160.6428838-CDS-P-wetherbeei_contig1898:6153..6345Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 6154..6345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1898.2.4prot_P-wetherbeei_contig1898.2.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1898 4731..6345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1898.2.4

>prot_P-wetherbeei_contig1898.2.4 ID=prot_P-wetherbeei_contig1898.2.4|Name=mRNA_P-wetherbeei_contig1898.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
NLHKVWVPTAFHVRTFTEGGVEPAKLRVLGEPVDTAFFDPAAIAEPLTLV
QLGLSMLPPAGAGAVRPFVFLSVFKWEERKAWDVLLTAYYRAFAAGRNAW
PVALVILTNAYHDDGADFDSQVAALARQVTGREPPELPPVRLLSRVPQSL
MPALYDSANAFVLPSRGEGWGRPHVEAMSMALPVLATNWSGPTEYMNDEN
AYPIAIDGLVEVKTGAFRGHLWAEPSVEHLVRLMRHVRENPAEAAARGAR
ARADMVRRYSPARVAEDLARLL
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mRNA from alignment at P-wetherbeei_contig1898:4731..6345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1898.2.4 ID=mRNA_P-wetherbeei_contig1898.2.4|Name=mRNA_P-wetherbeei_contig1898.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1615bp|location=Sequence derived from alignment at P-wetherbeei_contig1898:4731..6345- (Phaeothamnion wetherbeei SAG_119_79)
AACTTGCACAAGGTATGGGTGCCAACGGCGTTCCATGTGCGCACCTTTAC AGAGGGTGGTGTCGAGCCGGCGAAGCTCCGCGTTCTCGGGGAGCCCGTCG ACACGGCCTTCTTTGACCCGGCGGCCATCGCGGAACCACTGACTCTGGTG CAGCTGGGGCTTTCCATGTTGCCGCCGGCGGGGGCGGGGGCAGTGGCGGC AGCGGCGGCGGCGGGGGAGGGAGCGACGGAAGCGTTGGCAGCGGCAGCAG AGGTTCGACCTTTTGTCTTCCTGTCTGTGTTTAAGGTGGGTGAACGGTGA CGCAGCCTGTTTGCTCGCGGGAGGCTCTGGCTTCCTTTTTGCCTGGGCAT TTCCGCTTTTCTTTGTCCCAAGAGCGCTATATTGGTGGAATTGAGGACCT ACATGCGTCCATTAAACCCTTCTTGCTGGCGGCAGGTGCTTTTCGCGCAG GTTCTATCAGCCTTGCCTTTTTTGACTGATGTAAAAAGCTCTCTCGCTCA AAACCCTATCGCCCCTTCGACCTCATTTCCGCAGTGGGAAGAAAGGAAAG CGTGGGACGTTTTGCTGACGGCCTACTACCGTGCCTTTGCGGGTGAGCAC AACGGCGCCGAGAGCGGGAGCGGCGGAAGCAGCAATGGGGCCCCCGCCGC CAGAGCTGAAGTCGCCGCCAGCTGTGGCAGCAGCACCGGCGCCGACGCAA GCGATATCAAGGCTGGCGGCGGCGGCATCGTTGCCGACGGAAGCGGGAGC AGCGCTGGTATCAGCGAGGACGGCGAAGAAAGCAGTAACAGCAACGGCAG CAGCGGCGAAAGCAGCAGCAAAAGCGGCAAAGCGGGCAGGAATGCATGGC CGGTGGCGCTGGTCATCCTCACCAACGCCTACCACGACGACGGCGCCGAC TTCGACTCGCAAGTCGCCGCGCTGGCTCGGCAGGTGACGGGGCGGGAGCC GCCGGAGCTGCCGCCGGTGCGGCTGCTTTCGCGGGTGCCGCAAAGCCTGA TGCCGGCGCTGTACGACTCCGCCAACGCCTTTGTGCTGCCGTCGCGCGGG GAGGGGTGGGGCCGGCCGCACGTGGAGGCGATGAGCATGGCGCTGCCCGT CCTTGCCACCAACTGGTGAGTCGGACGATGTAAGCTCACATAAACAAAGC TCCTGGCTGGCACTTCTCGTGCCCACCGCCGGCTTTGTCGCGATCATGGG ATTGTACCCGGTGGGCTTTCCGCCTTGTTTATGCATGCCGAATAGGTTTG CCGTTCTATCGTTTCAACCATAATTCAGGCTGGCAGCCATAACCATCAAT GCTTGACGTTAATCACTGATGTCCCGCCATCCCCGCGACAAAATTGCTAC CGGAAAATCGCGCAGGAGCGGTCCGACGGAATACATGAACGACGAAAACG CCTACCCCATCGCCATCGATGGGCTGGTCGAGGTGAAAACCGGCGCATTC CGGGGCCACCTGTGGGCAGAGCCGTCGGTCGAGCACCTCGTCCGGCTCAT GCGGCACGTGCGGGAAAACCCCGCGGAGGCGGCGGCGCGCGGCGCCCGCG CGCGGGCCGACATGGTGCGCCGCTATAGCCCGGCGCGGGTGGCCGAAGAC TTGGCGAGGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1898:4731..6345-

>mRNA_P-wetherbeei_contig1898.2.4 ID=mRNA_P-wetherbeei_contig1898.2.4|Name=mRNA_P-wetherbeei_contig1898.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig1898:4731..6345- (Phaeothamnion wetherbeei SAG_119_79)
AACTTGCACAAGGTATGGGTGCCAACGGCGTTCCATGTGCGCACCTTTAC
AGAGGGTGGTGTCGAGCCGGCGAAGCTCCGCGTTCTCGGGGAGCCCGTCG
ACACGGCCTTCTTTGACCCGGCGGCCATCGCGGAACCACTGACTCTGGTG
CAGCTGGGGCTTTCCATGTTGCCGCCGGCGGGGGCGGGGGCAGTTCGACC
TTTTGTCTTCCTGTCTGTGTTTAAGTGGGAAGAAAGGAAAGCGTGGGACG
TTTTGCTGACGGCCTACTACCGTGCCTTTGCGGCGGGCAGGAATGCATGG
CCGGTGGCGCTGGTCATCCTCACCAACGCCTACCACGACGACGGCGCCGA
CTTCGACTCGCAAGTCGCCGCGCTGGCTCGGCAGGTGACGGGGCGGGAGC
CGCCGGAGCTGCCGCCGGTGCGGCTGCTTTCGCGGGTGCCGCAAAGCCTG
ATGCCGGCGCTGTACGACTCCGCCAACGCCTTTGTGCTGCCGTCGCGCGG
GGAGGGGTGGGGCCGGCCGCACGTGGAGGCGATGAGCATGGCGCTGCCCG
TCCTTGCCACCAACTGGAGCGGTCCGACGGAATACATGAACGACGAAAAC
GCCTACCCCATCGCCATCGATGGGCTGGTCGAGGTGAAAACCGGCGCATT
CCGGGGCCACCTGTGGGCAGAGCCGTCGGTCGAGCACCTCGTCCGGCTCA
TGCGGCACGTGCGGGAAAACCCCGCGGAGGCGGCGGCGCGCGGCGCCCGC
GCGCGGGCCGACATGGTGCGCCGCTATAGCCCGGCGCGGGTGGCCGAAGA
CTTGGCGAGGCTGCTG
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