mRNA_P-wetherbeei_contig1898.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1898.1.1
Unique NamemRNA_P-wetherbeei_contig1898.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: A0A836CEJ0_9STRA (Protein required for ethanol metabolism n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ0_9STRA)

HSP 1 Score: 309 bits (792), Expect = 1.220e-101
Identity = 157/236 (66.53%), Postives = 181/236 (76.69%), Query Frame = 1
Query:    1 QFLDATPGESCRLKDRPAVAKHAAAGGLQLPPAAVVGGATALVAADVAVIAFTPALRKYPLAANIVQGFVLFLAGDAYFQVIEQGLKVKRVGLNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHISQ 708
            QFLDATP ESCR K     AKHA   G  + PAA VGGATAL AAD+AVIA TPAL+K PL  N+VQGF LFL+GD YFQVIEQG   K +G +  RA ++G+IG+LNNGLVH++YYK+IDR FPY KF+ +RWG KDG KYKL VA+ KY +EWPT+G YKIAS + LT L+    L  + EKF  +F+LT LRSLQVWPLYDT  YAYIPTDHRPL N FMSIAWGGYLSHISQ
Sbjct:  146 QFLDATPSESCRRKGV-LKAKHALHSGALVSPAAAVGGATALFAADLAVIATTPALKKAPLLTNVVQGFALFLSGDTYFQVIEQGWASK-IGYSLARAAKAGVIGALNNGLVHFTYYKWIDRHFPYHKFTVDRWGPKDGTKYKLIVAWTKYWLEWPTIGVYKIASSFALTALMNN-DLKALPEKFSKRFMLTWLRSLQVWPLYDTFAYAYIPTDHRPLFNTFMSIAWGGYLSHISQ 378          
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: W7TJZ2_9STRA (Protein required for ethanol metabolism n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJZ2_9STRA)

HSP 1 Score: 295 bits (756), Expect = 6.260e-96
Identity = 149/243 (61.32%), Postives = 176/243 (72.43%), Query Frame = 1
Query:    1 QFLDATPGESCRLKDRPAVAKHAAAGGLQLPPAAVVGGATALVAADVAVIAFTPALRKYPLAANIVQGFVLFLAGDAYFQVIEQG--LKVKRVGLNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGS-----LAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHISQ 708
            +FLDAT  ESCRLK +           +   PA +  GATAL   D+A I FTP L+ +P+  N+VQGF+L LAGD YFQ++EQG    VKRVG+ AWRA RSGLIG+LNNGLVHYSYYK+IDRRFPY  F+E R+G  +G  YKL VA+AKY IEWPT+G YKIASM VLT  L G +      A + EKF+ +F LT LRSLQVWP+YDTI+YAY+P  HRPL N FMSIAWGGYLSHISQ
Sbjct:   78 RFLDATFSESCRLKVQRPHTTPLYRSKINGNPALIAAGATALFGVDIAAIIFTPLLQNFPITFNVVQGFILCLAGDTYFQIVEQGGLRGVKRVGVKAWRAVRSGLIGALNNGLVHYSYYKYIDRRFPYHLFTEERFGKPEGTYYKLCVAWAKYWIEWPTIGVYKIASMMVLTAALDGRNGWRKRFAKIPEKFRKRFRLTWLRSLQVWPIYDTILYAYVPASHRPLFNTFMSIAWGGYLSHISQ 320          
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: D7FVM5_ECTSI (Protein required for ethanol metabolism n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM5_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 1.010e-94
Identity = 144/236 (61.02%), Postives = 174/236 (73.73%), Query Frame = 1
Query:    1 QFLDATPGESCRLKDRPAVAKHAAAGGLQLPPAAVVGGATALVAADVAVIAFTPALRKYPLAANIVQGFVLFLAGDAYFQVIEQGLKVKRVGLNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHISQ 708
            QFLDAT  ESCR  D            +Q+ PA  + GA  L AAD+A I +T  L++YPL  N+VQGFVL  +GD  FQV+EQG + K +GL  WR  RSG+IG+LNNGLVHYSYYK+ID RFPY+KF+E RWG KDGAK KLAV F K+ +EWPT+G YKIASMYVLT +L G S  G+ E+ +D   LT +RSLQVWP+YD I+YAY+PT HRPL N+FMSIAWGGYLSH+SQ
Sbjct:  147 QFLDATVSESCRQADFKVTKAAFEQADVQVKPAVALVGAAGLFAADLAAIRYTDWLKRYPLLFNVVQGFVLLASGDTLFQVLEQGWQ-KVIGLKFWRMARSGIIGALNNGLVHYSYYKWIDGRFPYDKFTEKRWGPKDGAKSKLAVGFTKWALEWPTIGLYKIASMYVLTAVLSG-STKGLWERLQDSLFLTWIRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQ 380          
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: A0A6H5JN17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN17_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 1.290e-79
Identity = 114/170 (67.06%), Postives = 137/170 (80.59%), Query Frame = 1
Query:  199 QGFVLFLAGDAYFQVIEQGLKVKRVGLNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHISQ 708
            +GFVL  +GD  FQV+EQG + K +GL  WR  RSG+IG+LNNGLVHYSYYK+ID RFPY+KF+E RWG KDGAK KLAV F K+ +EWPT+G YKIASMYVLT +L G S  G+ E+ +D   LT +RSLQVWP+YD I+YAY+PT HRPL N+FMSIAWGGYLSH+SQ
Sbjct:    4 KGFVLLASGDTLFQVLEQGWQ-KVIGLKFWRMARSGIIGALNNGLVHYSYYKWIDGRFPYDKFTEKRWGPKDGAKSKLAVGFTKWALEWPTIGLYKIASMYVLTAVLSG-STKGLWERVQDSLFLTWIRSLQVWPIYDMILYAYVPTAHRPLFNSFMSIAWGGYLSHVSQ 171          
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: A0A7R8ALZ5_9EURO (Protein required for ethanol metabolism n=3 Tax=Aspergillus TaxID=5052 RepID=A0A7R8ALZ5_9EURO)

HSP 1 Score: 59.7 bits (143), Expect = 1.670e-7
Identity = 47/182 (25.82%), Postives = 75/182 (41.21%), Query Frame = 1
Query:  166 LRKYPLAANIVQGFVLFLAGDAYFQ--VIEQGLKVKRVGLNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHIS 705
            L + P+    +   VLF  GD   Q  V  +GL+          AF  G I     G     ++ F+ R   +              K   A   A+  ++    G   I+       ++ G   A  +EK+K  F+     +L VWP+  TI +A++P ++R LL  F+S+ W  +LS IS
Sbjct:    9 LARQPILTTSISSAVLFATGDVLAQQAVDRRGLEKHDFARTGRMAFYGGAIF----GPAATVWFSFLQRNVVF--------------KSNKATIAARVGLDQGLFGPLNISCFLTSMAVMEG---ADPIEKWKSSFLPVYKANLTVWPMVQTINFAFVPLEYRVLLVNFISLGWNCFLSLIS 169          
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: A0A182RS84_ANOFN (Uncharacterized protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A182RS84_ANOFN)

HSP 1 Score: 58.9 bits (141), Expect = 3.390e-7
Identity = 46/178 (25.84%), Postives = 74/178 (41.57%), Query Frame = 1
Query:  172 KYPLAANIVQGFVLFLAGDAYFQVIEQGLKVKRVG-LNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHI 702
             +PLA  IV   VL+   +    +++Q L+ +R G  +  +  R GL G+L      Y + K     +P                  L  A  K  +E  T G +   S   +  L  G +    +++ K KF  T +  L VWP+  TI +A++P  +R    A  S  W  +L+ I
Sbjct:    8 SHPLARGIVTYSVLWPTAN----LVQQSLEGRRFGSFDYGQCIRYGLYGALYVAPTIYGWVKISTIMWP---------------NMNLKTALFKAIVEQATYGPFAGVSFLFIMSLAEGATTGQAMQEVKVKFPQTYMIGLTVWPIIQTINFAFVPERNRVPFVAACSFVWTVFLASI 166          
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Match: E0VQ00_PEDHC (Protein SYM1, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VQ00_PEDHC)

HSP 1 Score: 55.1 bits (131), Expect = 9.160e-6
Identity = 43/180 (23.89%), Postives = 78/180 (43.33%), Query Frame = 1
Query:  169 RKYPLAANIVQGFVLFLAGDAYFQVIEQGLKVKRVGLNAWRAFRSGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAKYCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVWPLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHISQ 708
            +KYP+   ++    ++ AG    Q I      K   +N  R  R  + GS     V  + Y +I       + S   W + D   +K AV   K  +E  T G   +   +     L GG +   + + ++KF  T   ++ VWP+  TI +A++   +R +  +  S+ W  +L+++ Q
Sbjct:   10 QKYPIIRGMISYACIWPAGSYIQQKI-----AKEEEINCMRCIRFAMFGSC---FVAPTLYMWI-------RISSKLWPALD---FKTAVK--KAVVEQFTYGPAAMVCFFSGMTFLEGGGINDAITEVREKFFDTYKVAICVWPVLQTINFAFVHESNRVIFVSACSLIWTSFLAYMKQ 169          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1898.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CEJ0_9STRA1.220e-10166.53Protein required for ethanol metabolism n=1 Tax=Tr... [more]
W7TJZ2_9STRA6.260e-9661.32Protein required for ethanol metabolism n=2 Tax=Mo... [more]
D7FVM5_ECTSI1.010e-9461.02Protein required for ethanol metabolism n=1 Tax=Ec... [more]
A0A6H5JN17_9PHAE1.290e-7967.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R8ALZ5_9EURO1.670e-725.82Protein required for ethanol metabolism n=3 Tax=As... [more]
A0A182RS84_ANOFN3.390e-725.84Uncharacterized protein n=1 Tax=Anopheles funestus... [more]
E0VQ00_PEDHC9.160e-623.89Protein SYM1, putative n=1 Tax=Pediculus humanus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1898contigP-wetherbeei_contig1898:586..2415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog55529.EKX40901
PFAMsMpv17_PMP22
Model size708
Max annot lvl2759|Eukaryota
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons4
Evalue1.02e-16
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-01_009450.1
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size708
COG categoryC
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.5327697-CDS-P-wetherbeei_contig1898:585..6991683186160.5327697-CDS-P-wetherbeei_contig1898:585..699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 586..699 -
1683186160.5447137-CDS-P-wetherbeei_contig1898:1054..12091683186160.5447137-CDS-P-wetherbeei_contig1898:1054..1209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 1055..1209 -
1683186160.5540476-CDS-P-wetherbeei_contig1898:1579..17781683186160.5540476-CDS-P-wetherbeei_contig1898:1579..1778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 1580..1778 -
1683186160.5635962-CDS-P-wetherbeei_contig1898:2175..24151683186160.5635962-CDS-P-wetherbeei_contig1898:2175..2415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1898 2176..2415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1898.1.1prot_P-wetherbeei_contig1898.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1898 586..2415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1898.1.1

>prot_P-wetherbeei_contig1898.1.1 ID=prot_P-wetherbeei_contig1898.1.1|Name=mRNA_P-wetherbeei_contig1898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
QFLDATPGESCRLKDRPAVAKHAAAGGLQLPPAAVVGGATALVAADVAVI
AFTPALRKYPLAANIVQGFVLFLAGDAYFQVIEQGLKVKRVGLNAWRAFR
SGLIGSLNNGLVHYSYYKFIDRRFPYEKFSENRWGSKDGAKYKLAVAFAK
YCIEWPTVGAYKIASMYVLTGLLGGGSLAGVVEKFKDKFVLTMLRSLQVW
PLYDTIMYAYIPTDHRPLLNAFMSIAWGGYLSHISQ
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mRNA from alignment at P-wetherbeei_contig1898:586..2415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1898.1.1 ID=mRNA_P-wetherbeei_contig1898.1.1|Name=mRNA_P-wetherbeei_contig1898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1830bp|location=Sequence derived from alignment at P-wetherbeei_contig1898:586..2415- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCTTGGATGCTACGCCCGGAGAGTCCTGTCGGCTGAAGGACCGGCC GGCGGTGGCGAAGCACGCGGCGGCGGGCGGGCTGCAGCTGCCGCCGGCGG CTGTCGTCGGCGGCGCGACGGCACTCGTCGCCGCCGACGTCGCCGTCATC GCGTTCACGCCGGCGCTGCGCAAGTACCCGCTGGCGGCCAACATCGTGCA GGGCTTCGTGCTCTTCCTCGCGGGGGATGCCTACTTCCAGGTGAGGTTCA TTTCGAATGAGGAGAGAAAGGGAGACGAAGGACGGGCCAAGAGGGATCTG TCTCCCCTTTTTCCTGCTCAAGGGCTCCGCTTCTTTACTTAGGCGGGCAG AAACCGAGGCGCAGCTTCCGGCTGCCGGACTTTGCTGCCATTGCTGCGAT GCGAACGTCGTGCCGTTGTGGTTCTGTTTGTTTCGCGTCCCTCCCTCCCT TCCTCGCGGCTGTCTGCGTTCCGCCTTCGTCTACCGTTTCTTTACCTCGC ACCTTGGTGGACTATTATTCTCCATGCGACCCGCTGCATTGCCTTACGAT CCCTTTGTTGGCAATTGCCTTTGCCTTGCCGTTTCTTCCTTCCTTTCCCT TTGATTTGCTTTCTCCTTTCTCCTTCCTTTCGCGCAGGTTATCGAGCAGG GGCTGAAAGTGAAGCGCGTGGGCCTCAACGCCTGGCGGGCCTTCCGCAGC GGCCTCATCGGGTCACTCAACAACGGCTTGGTGCACTACTCGTACTACAA GTTCATTGACCGGCGCTTCCCCTACGAGAAGTTCAGCGAGAACCGCTGGG GCTCCAAGGACGGCGCCAAGTACAAGCTCGCCGTCGGTGAGTTCGTCGTT TTGTTGTTCCTACAGTTTGATTTGGTCTCGGTCAACGTCGCGTGGCCCGT TTGTGCTTCAGTTCGCGGGGCGGGTTCCTTTGTCGGGCCTGGCACGCGAC GCTTTGTTCTGGGGGGGAAGGTTAGCATGGTACCGCATGGCAGCTTGCTT GTTCCTTTGCTCTTGCGTCGTGTGTTGTGTAAGCTCGTCTTTAATACCAA CACACGGCGCAATTGCTTGTGCAGTCGTTTCTGCAACCCTTTCCCTTCTT CTTGCTTATAGGCTTTTCTGTCAACGCCGTGCGTAAACATGTTTTGTTTT ATGAGAAGCGAATGGTTCTTTGCTCCTCCCTCCCTAATCCCGTTCTCATC GTCCAGCCTTCGCAAAGTACTGCATCGAGTGGCCGACGGTGGGGGCCTAC AAGATCGCGTCGATGTACGTGCTGACGGGGCTGCTCGGCGGTGGCTCGCT GGCGGGCGTCGTCGAAAAGTTCAAGGACAAGTTTGTCCTCACCATGCTCC GCTCGCTTCAGGTAAGGAGAACAACCGGGAGGGAAGGGACGAAAGGACGT AAATGAGAGACGTGGGGACGCGACCCTGGGGGCGGGGACGAGGATACAAG GAGCTCGCTGTGTCTCTTTCCTGCCGCATCCCTCGCTGGGCCCGTGTTGC GGCGGTGGTATCGCTGGAGTATCCTCTTTTGTGGAGGGCTCCAGCCAGGG CATCCATTGCGTTTTCTCGCATCGCTGTTAAGCCTTTGGGTTTGCAGATA CGTTGCCAAGCTCAGTTAAACGTCTTCTCGACACAAGCCTCGCCTTTCTT TGGCCATTCTTTATTCACCCACTTCCGTTTCACTTATCGGGCCCCATGGC GTTTCGCTGTGGACAGGTATGGCCGCTCTACGACACCATCATGTACGCGT ACATCCCGACGGACCACCGCCCGCTTCTCAATGCATTTATGTCCATCGCC TGGGGAGGCTACCTCAGCCACATCAGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1898:586..2415-

>mRNA_P-wetherbeei_contig1898.1.1 ID=mRNA_P-wetherbeei_contig1898.1.1|Name=mRNA_P-wetherbeei_contig1898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig1898:586..2415- (Phaeothamnion wetherbeei SAG_119_79)
CAGTTCTTGGATGCTACGCCCGGAGAGTCCTGTCGGCTGAAGGACCGGCC
GGCGGTGGCGAAGCACGCGGCGGCGGGCGGGCTGCAGCTGCCGCCGGCGG
CTGTCGTCGGCGGCGCGACGGCACTCGTCGCCGCCGACGTCGCCGTCATC
GCGTTCACGCCGGCGCTGCGCAAGTACCCGCTGGCGGCCAACATCGTGCA
GGGCTTCGTGCTCTTCCTCGCGGGGGATGCCTACTTCCAGGTTATCGAGC
AGGGGCTGAAAGTGAAGCGCGTGGGCCTCAACGCCTGGCGGGCCTTCCGC
AGCGGCCTCATCGGGTCACTCAACAACGGCTTGGTGCACTACTCGTACTA
CAAGTTCATTGACCGGCGCTTCCCCTACGAGAAGTTCAGCGAGAACCGCT
GGGGCTCCAAGGACGGCGCCAAGTACAAGCTCGCCGTCGCCTTCGCAAAG
TACTGCATCGAGTGGCCGACGGTGGGGGCCTACAAGATCGCGTCGATGTA
CGTGCTGACGGGGCTGCTCGGCGGTGGCTCGCTGGCGGGCGTCGTCGAAA
AGTTCAAGGACAAGTTTGTCCTCACCATGCTCCGCTCGCTTCAGGTATGG
CCGCTCTACGACACCATCATGTACGCGTACATCCCGACGGACCACCGCCC
GCTTCTCAATGCATTTATGTCCATCGCCTGGGGAGGCTACCTCAGCCACA
TCAGCCAG
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