mRNA_P-wetherbeei_contig1896.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1896.3.1
Unique NamemRNA_P-wetherbeei_contig1896.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A6U1QEX2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEX2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.630e-11
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRTR 766
            FRHS+++SF RQLNYFGFKK+QGKGK+ PCVYA+  L G ++  LL ++R+T+
Sbjct:   61 FRHSRYTSFKRQLNYFGFKKVQGKGKMNPCVYANTELQGADVEELLRMKRKTK 113
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S0FH12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FH12_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.160e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRT 763
            FRHSK+SSF RQLNYFGFKKI GKGK+ PC Y ++     +LG LL IRR+T
Sbjct:   60 FRHSKYSSFQRQLNYFGFKKISGKGKMSPCSYINDAATA-DLGCLLTIRRKT 110
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A6V1MA78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MA78_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 9.260e-11
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 2 
Query:  596 VPADFRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRTRP-APRHAAPK 793
            +P  FRHSK+SSF RQLNYFGFKK +GKGK+ PCVY+   L G  L ++L ++R+    APRH   K
Sbjct:   87 LPKYFRHSKYSSFQRQLNYFGFKKTEGKGKMTPCVYSSLELQGRPLESILEMKRKINVMAPRHKGDK 153
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S2V2P2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2P2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.650e-10
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRT 763
            FRH+ ++SF RQLNYFGF+KI+GKGK+ PC+YA+E L G +L  +L I+R+T
Sbjct:   61 FRHANYNSFKRQLNYFGFRKIEGKGKMEPCIYANEDLEGADLEAILDIKRKT 112
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A1Z5KFF7_FISSO (HSF_DOMAIN domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF7_FISSO)

HSP 1 Score: 72.8 bits (177), Expect = 2.600e-10
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRT 763
            FRHSKFSSF RQLNYFGF+K+ GKGK+ PC Y +E   G E+ +LL I+R+T
Sbjct:   55 FRHSKFSSFQRQLNYFGFRKLAGKGKMAPCSYVNES-TGKEINSLLKIKRKT 105
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S2WUA2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUA2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.880e-10
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 2 
Query:  599 PADFRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRTRPAP 775
            P  FRHS+FSSF RQLN FGF+KI+GKGKL PC+Y  + L G +  +LL IRR+    P
Sbjct:    1 PKYFRHSRFSSFQRQLNNFGFRKIEGKGKLVPCIYGRDDLAGQQPVSLLSIRRKVNTVP 59
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S2YAW8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YAW8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.180e-10
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRT 763
            FRHSKF+SF RQLNYFGF+K  GKGK+ PC Y +E L   +L  LLHI+R+T
Sbjct:  130 FRHSKFASFQRQLNYFGFRKQAGKGKMAPCSYVNENLPSTDLSCLLHIKRKT 181
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S2XX45_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX45_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.490e-10
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRTR 766
            FRH+ ++SF RQLNYFGF+KI GKGK+ PCVYA+E L G +L  +L I+R+T+
Sbjct:   84 FRHANYNSFKRQLNYFGFRKIDGKGKMEPCVYANEDLEGSDLEAILDIKRKTK 136
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BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S4E822_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E822_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.530e-9
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRR 760
            FRHS FSSF RQLN FGF+K++GKGKL PC+Y H+ LVG     +L IRR+
Sbjct:   54 FRHSNFSSFQRQLNNFGFRKVEGKGKLAPCMYMHDDLVGRPPEAILTIRRK 104
[Close]
BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Match: A0A7S2PR62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PR62_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.110e-9
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  608 FRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVGPELGNLLHIRRRT 763
            FRHSK++SF RQLNYFGF+K+ GKGK+ PC Y +E     EL +LL IRR+T
Sbjct:   97 FRHSKYASFQRQLNYFGFRKLSGKGKMAPCSYINEAAT-KELKSLLAIRRKT 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1896.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U1QEX2_9STRA1.630e-1160.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FH12_9STRA4.160e-1165.38Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A6V1MA78_HETAK9.260e-1155.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V2P2_9STRA1.650e-1059.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KFF7_FISSO2.600e-1063.46HSF_DOMAIN domain-containing protein n=2 Tax=Fistu... [more]
A0A7S2WUA2_9STRA2.880e-1057.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2YAW8_9STRA3.180e-1063.46Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2XX45_9STRA4.490e-1060.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4E822_9STRA1.530e-962.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2PR62_9STRA4.110e-961.54Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1896contigP-wetherbeei_contig1896:3100..5225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr35419
PFAMsHSF_DNA-bind
Model size2126
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.08e-10
EggNOG OGsCOG5169@1|root,KOG0627@2759|Eukaryota,2XG34@2836|Bacillariophyta
Descriptionheat shock factor
Cds size1095
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.129172-UTR-P-wetherbeei_contig1896:3099..36731683186160.129172-UTR-P-wetherbeei_contig1896:3099..3673Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1896 3100..3673 +
1683186160.1581252-UTR-P-wetherbeei_contig1896:4768..52251683186160.1581252-UTR-P-wetherbeei_contig1896:4768..5225Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1896 4769..5225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.1477113-CDS-P-wetherbeei_contig1896:3673..47681683186160.1477113-CDS-P-wetherbeei_contig1896:3673..4768Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1896 3674..4768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1896.3.1prot_P-wetherbeei_contig1896.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1896 3674..4768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1896.3.1

>prot_P-wetherbeei_contig1896.3.1 ID=prot_P-wetherbeei_contig1896.3.1|Name=mRNA_P-wetherbeei_contig1896.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=365bp
MLCPPFSVPADFRHSKFSSFNRQLNYFGFKKIQGKGKLCPCVYAHEMLVG
PELGNLLHIRRRTRPAPRHAAPKDAAATALAMQQQRQWEANFMASGGSDA
PSSSGNAAARARKPRRPTAPRSGNSSSSGNNSSSSHSSSSGTSDETSDSA
SSSTGRGSAGGGANTGAERRARASRGAVARAAGGASDRQRSGAAGSRASS
ARQPVSSSGPVSSSGLSLSQAVDMTGGFTLFDLAGGGGGMSLPDYGQSSR
AASGSEQWPTSTRSSSSDYSSEAEGDNMDNEMDGDGENDVENDGGSGGRN
CNNEARRETADEEGDQFLWDLGRTLDGFGGAFPGGVDPFLAFLNGTTSGG
SAAGGNNVEGISSF*
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mRNA from alignment at P-wetherbeei_contig1896:3100..5225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1896.3.1 ID=mRNA_P-wetherbeei_contig1896.3.1|Name=mRNA_P-wetherbeei_contig1896.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2126bp|location=Sequence derived from alignment at P-wetherbeei_contig1896:3100..5225+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAAATGCCGAGGCCCGCGGATTTCCTCAGGAAGCTGCTCTCCATGCTG
GAACGAGAGGACTCGGACGTCATCGCATGGGACAACGGTGCGTCGATTTG
CGCCGGAGTTGGGTCTCCAACACGCATACGCACTGACCTTACTCAGGTTT
ACTCGTAAAATTTTGGTTTCGAGGGAGAATGCTTTGCCGTCTTACCCTTC
ATCATCTCTGTCGCCTCACGACGCCCGGGTATCGCAGGAAAAATATATGT
CATCGACCCGAACCGCCTCGGCAACGAGGTGCTTCACAAATGTAAGGTTA
CTCCTGGGCCATACATTGGCGGTATTATCGATCGCGCCGACACAGCTTTG
GCCCTCATTTATGGGCAAGCTACTTTGTCTGCTGCTTTGCGTTGACAGCG
TCGCGCCTCTGCGCACCGCCGCTGAAAAGACAACCAAATTTAAAGGTCCC
TCGCCTTCACAGTAAATTAAAAGAGTGCCGAAGTCACTTGTCTCCTCGTT
CGCACATCAAATGGATTGCCAGGGCAGCCGAAAACCGTCGGTCAAAATCC
ACAACTTGCCATTTCCTCTCGTTGATGCTCTGCCCGCCGTTTTCGGTCCC
GGCAGACTTCAGGCACAGTAAATTCAGCTCGTTCAACAGGCAACTGAACT
ACTTCGGCTTCAAGAAGATCCAGGGAAAGGGCAAGCTGTGCCCATGCGTC
TACGCGCACGAGATGCTTGTGGGGCCTGAGCTCGGCAACCTGTTGCACAT
TCGGCGGCGCACCCGGCCCGCGCCCCGACACGCGGCGCCTAAGGACGCCG
CCGCCACGGCGCTCGCCATGCAGCAGCAGCGGCAATGGGAGGCCAATTTC
ATGGCCAGCGGCGGCAGTGACGCACCCTCATCGTCGGGCAACGCTGCCGC
CCGCGCCCGCAAGCCGCGAAGGCCAACGGCGCCCCGTTCCGGCAACAGCA
GCAGCAGCGGGAACAACTCGTCGTCGTCGCATTCGTCGTCCTCCGGAACG
TCCGATGAGACGTCAGACTCGGCCTCGTCCTCAACCGGGCGCGGCAGCGC
CGGCGGCGGCGCTAACACGGGGGCGGAGCGCCGCGCACGGGCATCGCGGG
GGGCTGTCGCGCGAGCGGCCGGCGGGGCCTCGGATCGGCAGCGATCAGGC
GCGGCGGGGAGCCGCGCCAGTAGTGCGCGGCAGCCGGTCAGCAGCAGTGG
GCCGGTCAGCAGCAGTGGGCTGTCGCTGTCGCAGGCCGTCGACATGACCG
GCGGTTTCACGCTGTTCGACCTCGCCGGAGGCGGCGGCGGCATGTCACTG
CCGGACTACGGGCAGTCGTCGCGCGCCGCGTCGGGCTCAGAGCAGTGGCC
GACGTCGACGCGGTCCTCCAGCTCCGACTACAGCAGTGAGGCGGAGGGTG
ACAACATGGACAACGAGATGGACGGCGACGGCGAAAACGACGTCGAAAAC
GACGGCGGTAGCGGCGGCAGAAACTGCAACAATGAGGCGAGACGCGAAAC
GGCAGACGAAGAGGGCGATCAGTTCCTATGGGACCTCGGCCGGACGCTCG
ACGGATTCGGCGGCGCCTTCCCGGGCGGCGTCGACCCGTTCTTGGCGTTC
CTCAATGGGACAACCAGCGGCGGCAGCGCAGCCGGCGGTAACAACGTTGA
AGGCATCTCATCCTTTTGACGAGACCCGACGGCGGCGGTGCGGCGTCAAC
AAAGAGCAATAGGCGGTAGCGATGATGACGGTGGCTAGGGCTCGGCGGGC
AGGATGGCCGGTTAGCGATAGTTCTCTCTTTTTCTTCTTGCGTGTAGCGG
TGGTAGGGTGTAGCGGTGGTAGGGGATTGGGGGTGGTGCGGAAAAGGAAA
AAAGAGAAGACGTTGGAGGGGATGTACAGGCTCAAGAGGTTGCTGGGAAC
GTTCTCAGAGTTCCCTCATGTGAGCTTTAGTTGCCTCGGGAAGGGTGCCG
ACCGAACGGGGCCTGTATCTCGCGACACGTGCGTTGCCGGGTGCAGAAGC
GGCACGCATGGACGGGCCCGGGGCCGGATCCCCAGTGAGGGGCTGTAACG
GCGCACTTGCCATCATTGGGGGTTGGGTTGGGGGGACAGAAATGTGCGCG
CCAAACGCCAAACGGAGTTTCCAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1896:3100..5225+

>mRNA_P-wetherbeei_contig1896.3.1 ID=mRNA_P-wetherbeei_contig1896.3.1|Name=mRNA_P-wetherbeei_contig1896.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig1896:3100..5225+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTGCCCGCCGTTTTCGGTCCCGGCAGACTTCAGGCACAGTAAATT
CAGCTCGTTCAACAGGCAACTGAACTACTTCGGCTTCAAGAAGATCCAGG
GAAAGGGCAAGCTGTGCCCATGCGTCTACGCGCACGAGATGCTTGTGGGG
CCTGAGCTCGGCAACCTGTTGCACATTCGGCGGCGCACCCGGCCCGCGCC
CCGACACGCGGCGCCTAAGGACGCCGCCGCCACGGCGCTCGCCATGCAGC
AGCAGCGGCAATGGGAGGCCAATTTCATGGCCAGCGGCGGCAGTGACGCA
CCCTCATCGTCGGGCAACGCTGCCGCCCGCGCCCGCAAGCCGCGAAGGCC
AACGGCGCCCCGTTCCGGCAACAGCAGCAGCAGCGGGAACAACTCGTCGT
CGTCGCATTCGTCGTCCTCCGGAACGTCCGATGAGACGTCAGACTCGGCC
TCGTCCTCAACCGGGCGCGGCAGCGCCGGCGGCGGCGCTAACACGGGGGC
GGAGCGCCGCGCACGGGCATCGCGGGGGGCTGTCGCGCGAGCGGCCGGCG
GGGCCTCGGATCGGCAGCGATCAGGCGCGGCGGGGAGCCGCGCCAGTAGT
GCGCGGCAGCCGGTCAGCAGCAGTGGGCCGGTCAGCAGCAGTGGGCTGTC
GCTGTCGCAGGCCGTCGACATGACCGGCGGTTTCACGCTGTTCGACCTCG
CCGGAGGCGGCGGCGGCATGTCACTGCCGGACTACGGGCAGTCGTCGCGC
GCCGCGTCGGGCTCAGAGCAGTGGCCGACGTCGACGCGGTCCTCCAGCTC
CGACTACAGCAGTGAGGCGGAGGGTGACAACATGGACAACGAGATGGACG
GCGACGGCGAAAACGACGTCGAAAACGACGGCGGTAGCGGCGGCAGAAAC
TGCAACAATGAGGCGAGACGCGAAACGGCAGACGAAGAGGGCGATCAGTT
CCTATGGGACCTCGGCCGGACGCTCGACGGATTCGGCGGCGCCTTCCCGG
GCGGCGTCGACCCGTTCTTGGCGTTCCTCAATGGGACAACCAGCGGCGGC
AGCGCAGCCGGCGGTAACAACGTTGAAGGCATCTCATCCTTTTGA
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