mRNA_P-wetherbeei_contig18952.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18952.2.1
Unique NamemRNA_P-wetherbeei_contig18952.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18952.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18952contigP-wetherbeei_contig18952:2..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1210
Hectar predicted targeting categoryother localisation
Exons1
Cds size729
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.9953926-UTR-P-wetherbeei_contig18952:1..3381683186159.9953926-UTR-P-wetherbeei_contig18952:1..338Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18952 2..338 -
1683186160.014662-UTR-P-wetherbeei_contig18952:1067..12111683186160.014662-UTR-P-wetherbeei_contig18952:1067..1211Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18952 1068..1211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186160.0050015-CDS-P-wetherbeei_contig18952:338..10671683186160.0050015-CDS-P-wetherbeei_contig18952:338..1067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18952 339..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18952.2.1prot_P-wetherbeei_contig18952.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18952 339..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18952.2.1

>prot_P-wetherbeei_contig18952.2.1 ID=prot_P-wetherbeei_contig18952.2.1|Name=mRNA_P-wetherbeei_contig18952.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
MPDHRWNLWGFPGIFSVFTVEHVLPEQRSPTTHVKPALLSVHSPALSLGP
ICLAKAAALRNQKEAQLGKVRQAAFPCLFLCRLTENLPIPSPPPLAASDL
MFLLIPLFLPSQAEETSRSSLPQPRRSVSKRRGRAAAGWSLCIPAATQPR
PPAVDGMVVVAATAASATSAAARARQALRSPAPSRASGALPLAGVSEVPI
LVSAGAPRHPRPEKRWPRRGRSWRRSWSFCSPFPRGPFSRWW*
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mRNA from alignment at P-wetherbeei_contig18952:2..1211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18952.2.1 ID=mRNA_P-wetherbeei_contig18952.2.1|Name=mRNA_P-wetherbeei_contig18952.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1210bp|location=Sequence derived from alignment at P-wetherbeei_contig18952:2..1211- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGACTGCGGTCGACCTGACGGCAGACATCGGGGCCGACGTCGAAGAC
AAGGCGGCAGTCCTCGGAAAGAAGCCCAACAGGGCGAAGTAAGCCGGCCT
TCCAACCAACCTCTTCACTTTCCAGAACTCTCACCAGCTATGTCATGCCG
GATCATCGTTGGAATCTGTGGGGTTTCCCAGGTATTTTTTCTGTGTTTAC
TGTTGAGCATGTGTTACCTGAGCAAAGAAGTCCAACAACGCACGTCAAAC
CAGCCCTTCTTTCAGTGCATTCTCCCGCTCTTTCCCTTGGCCCAATTTGC
CTAGCAAAGGCGGCGGCCCTCAGGAATCAGAAAGAAGCGCAGTTGGGCAA
GGTTCGCCAGGCAGCTTTCCCGTGCCTTTTCCTTTGCCGTCTCACAGAAA
ATTTACCGATACCATCACCTCCTCCCCTTGCTGCCTCCGATTTGATGTTT
CTTTTAATCCCTCTCTTCCTGCCATCGCAAGCAGAAGAGACTTCGCGAAG
CTCCTTGCCTCAGCCCCGGCGATCCGTGTCGAAGCGGCGTGGGCGCGCCG
CGGCTGGCTGGTCGCTCTGCATTCCCGCCGCCACTCAGCCGCGTCCACCC
GCAGTGGACGGAATGGTGGTAGTGGCTGCAACGGCAGCATCGGCAACATC
GGCGGCGGCGCGGGCGCGGCAGGCGCTGCGGTCGCCGGCGCCCTCGCGGG
CCTCTGGAGCCTTGCCACTGGCTGGGGTCTCGGAAGTTCCAATTCTGGTT
TCGGCCGGAGCCCCGCGTCATCCGCGACCGGAAAAACGATGGCCGCGCCG
CGGGCGGAGCTGGAGGCGCTCGTGGAGCTTCTGCTCGCCGTTTCCGAGGG
GGCCATTTTCAAGATGGTGGTAAGGTACATTTAGTTTAAGAAGGGTTTAC
CTGGCAGTTTCTCTTTTTTGGAACTGCTGACCGGGCCGGCGGTTTCCTCT
TTGGATCAGCCGGGCCGGCGGCTCGCGGACGGGCGGTTTTCGAGCCGGCG
GCTTTAATTATGCCACTGAGGGTTTCAAGGATATCGGCTTCGGCATTTTA
AGCTTTTTGGCCAAAGACGCTGAACAGGGAAGGTACTGCTACGGTTGTGG
TCGAAAGGGGTTTACTTGGAATTACGGAGGCATCGTACGAAACGGAAGGT
GCTCTTTAGGGATGAAGGATTGGGGACTGCATTTGAAGTGTACATTGCAG
CCAAACTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18952:2..1211-

>mRNA_P-wetherbeei_contig18952.2.1 ID=mRNA_P-wetherbeei_contig18952.2.1|Name=mRNA_P-wetherbeei_contig18952.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig18952:2..1211- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGATCATCGTTGGAATCTGTGGGGTTTCCCAGGTATTTTTTCTGT
GTTTACTGTTGAGCATGTGTTACCTGAGCAAAGAAGTCCAACAACGCACG
TCAAACCAGCCCTTCTTTCAGTGCATTCTCCCGCTCTTTCCCTTGGCCCA
ATTTGCCTAGCAAAGGCGGCGGCCCTCAGGAATCAGAAAGAAGCGCAGTT
GGGCAAGGTTCGCCAGGCAGCTTTCCCGTGCCTTTTCCTTTGCCGTCTCA
CAGAAAATTTACCGATACCATCACCTCCTCCCCTTGCTGCCTCCGATTTG
ATGTTTCTTTTAATCCCTCTCTTCCTGCCATCGCAAGCAGAAGAGACTTC
GCGAAGCTCCTTGCCTCAGCCCCGGCGATCCGTGTCGAAGCGGCGTGGGC
GCGCCGCGGCTGGCTGGTCGCTCTGCATTCCCGCCGCCACTCAGCCGCGT
CCACCCGCAGTGGACGGAATGGTGGTAGTGGCTGCAACGGCAGCATCGGC
AACATCGGCGGCGGCGCGGGCGCGGCAGGCGCTGCGGTCGCCGGCGCCCT
CGCGGGCCTCTGGAGCCTTGCCACTGGCTGGGGTCTCGGAAGTTCCAATT
CTGGTTTCGGCCGGAGCCCCGCGTCATCCGCGACCGGAAAAACGATGGCC
GCGCCGCGGGCGGAGCTGGAGGCGCTCGTGGAGCTTCTGCTCGCCGTTTC
CGAGGGGGCCATTTTCAAGATGGTGGTAA
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