mRNA_P-wetherbeei_contig18951.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18951.2.1
Unique NamemRNA_P-wetherbeei_contig18951.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A1F4F6J5_9PROT (Acyl dehydratase n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4F6J5_9PROT)

HSP 1 Score: 242 bits (617), Expect = 5.030e-80
Identity = 116/150 (77.33%), Postives = 133/150 (88.67%), Query Frame = 1
Query:    1 MSNTLPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKR 450
            MS+ LPVVGRG+C+EDL VG +FRTHRRT+ E+DL +F+NLTWLTEELF VA+D GRAIKGR VPGA+VYAFAEGLLLP+MQDTGLAFLNA LD+K PT VGDTIHVE EVTE RLT+KG+RGLVR+AN +VNQ G TV+ YNPLRMLKR
Sbjct:    1 MSDALPVVGRGYCYEDLRVGFRFRTHRRTLNEADLASFINLTWLTEELFAVADDSGRAIKGRPVPGALVYAFAEGLLLPSMQDTGLAFLNATLDVKRPTLVGDTIHVEVEVTEMRLTAKGERGLVRSANNVVNQRGETVLAYNPLRMLKR 150          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A1F3YTJ4_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YTJ4_9PROT)

HSP 1 Score: 239 bits (609), Expect = 9.530e-79
Identity = 118/155 (76.13%), Postives = 132/155 (85.16%), Query Frame = 1
Query:    1 MSNTLPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAE----DEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            MS+ +P+ GRGFCFEDL VG + RTHRRTIAE+DL AFVNLTWLTEELF V E    D  RA+KGR VPGA+VY+FAEGLLLPTMQDTGLAFLNA +DIK PT VGDTIHVEAEVTE RLTSKGDRGLVR AN+++NQ G TV+ YNPLRMLKR+
Sbjct:    1 MSDPIPIAGRGFCFEDLKVGFRIRTHRRTIAEADLAAFVNLTWLTEELFAVVEKPGDDSSRALKGRPVPGALVYSFAEGLLLPTMQDTGLAFLNATIDIKGPTAVGDTIHVEAEVTEHRLTSKGDRGLVRFANKVINQRGETVLEYNPLRMLKRK 155          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A1F4B1P5_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B1P5_9PROT)

HSP 1 Score: 238 bits (606), Expect = 2.390e-78
Identity = 117/151 (77.48%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 MSNTLPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            MS  L +VGRGFC+EDL VG +FRTHRRT+ E+DL +FVNLTWLTEELF VA+D  RAIKGR VPGA+VYAFAEGLLLPTMQDTGLAFLNA L++K PT VGDTIH EAEVTE RLTSKGDRGLVR AN  +NQ G TV+ YNPLRMLKRR
Sbjct:    1 MSQALQLVGRGFCYEDLQVGMRFRTHRRTLTEADLASFVNLTWLTEELFAVADDSDRAIKGRPVPGALVYAFAEGLLLPTMQDTGLAFLNATLEVKRPTFVGDTIHAEAEVTEMRLTSKGDRGLVRFANSAINQRGETVLVYNPLRMLKRR 151          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A536SYH8_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SYH8_9PROT)

HSP 1 Score: 236 bits (603), Expect = 7.080e-78
Identity = 115/147 (78.23%), Postives = 130/147 (88.44%), Query Frame = 1
Query:   13 LPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            LPVVGRGF FEDL VG +FRTHRRTI+E+DL  FVN+TWLTEELFTVA+D GRAIKGRAVP A+VYAFAEGLLLPTMQDTGLAFLNA LD+KAPT +GDT+HVEAEV E RLTSK DRGLVR AN+++NQ G  V+ YNPLR+LKR+
Sbjct:    6 LPVVGRGFSFEDLRVGFRFRTHRRTISEADLAQFVNVTWLTEELFTVADDAGRAIKGRAVPAALVYAFAEGLLLPTMQDTGLAFLNATLDVKAPTLIGDTLHVEAEVIEHRLTSKADRGLVRFANKVINQSGRAVLEYNPLRLLKRK 152          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A1F4FCW7_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FCW7_9PROT)

HSP 1 Score: 234 bits (597), Expect = 5.080e-77
Identity = 112/147 (76.19%), Postives = 129/147 (87.76%), Query Frame = 1
Query:   13 LPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            +PV+GRGF FEDL +G +FRTHRRTI E+DL AF+NLTWLTEELF VA++ GRAI+GR VPGA+VY+FAEGLLLPTMQDTGLAFLN  LD+KAPT VGDTIHVE EV E RLTSKGDRGLVR AN++VNQ G TV+ YNPLR+LKR+
Sbjct:    2 IPVIGRGFTFEDLKLGARFRTHRRTIVEADLAAFINLTWLTEELFAVADESGRAIEGRPVPGALVYSFAEGLLLPTMQDTGLAFLNCTLDVKAPTAVGDTIHVECEVIEHRLTSKGDRGLVRCANKVVNQRGETVLEYNPLRLLKRK 148          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A521YVV3_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YVV3_9PROT)

HSP 1 Score: 231 bits (590), Expect = 5.920e-76
Identity = 111/146 (76.03%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   16 PVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            PV+GRGF FEDL  G +FRTHRRT++E+D+ AF+NLTWLTEELF VA+D  RAIKGRAVPGA+VY+FAEGLLLP+MQDTGLAFLN  LD+K PT VGDT+HVEAEV E RLTSKGDRGLVR AN++VNQ G TV+ YNPLR+LKRR
Sbjct:    3 PVIGRGFSFEDLKPGFRFRTHRRTLSEADVAAFINLTWLTEELFAVADDSARAIKGRAVPGALVYSFAEGLLLPSMQDTGLAFLNCTLDVKGPTVVGDTLHVEAEVIEHRLTSKGDRGLVRFANKVVNQRGETVLEYNPLRLLKRR 148          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A1F4F317_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F317_9PROT)

HSP 1 Score: 231 bits (589), Expect = 9.940e-76
Identity = 115/151 (76.16%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 MSNTLPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            MS  L VVGRGF FEDL VG +FRTHRRTI ++DL AFVNL+WLTEELFTVA+D GRAI GR VP A++Y+ AEGLLLPTMQDTGLAFLNA LD+KAPT VGDTIHVE+EV E RLTSKGDRGLVR AN++VNQ G  V+ YNPLR+LKRR
Sbjct:    1 MSEALQVVGRGFRFEDLKVGFRFRTHRRTITQADLSAFVNLSWLTEELFTVADDSGRAIAGRPVPAALIYSCAEGLLLPTMQDTGLAFLNATLDVKAPTLVGDTIHVESEVIEHRLTSKGDRGLVRFANKVVNQRGEVVLEYNPLRLLKRR 151          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A537A2V1_9PROT (Acyl dehydratase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537A2V1_9PROT)

HSP 1 Score: 231 bits (588), Expect = 1.560e-75
Identity = 117/154 (75.97%), Postives = 129/154 (83.77%), Query Frame = 1
Query:    4 SNTLPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFTVAE----DEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            +  LP+VGRGFCFEDL VG +FRTHRRTIAESDL  FVNL+WLTEELF V E    D  RAIKGRAVP A+VYAFAEGLLLPTMQDTGLAFLNA LD+K PT VGDTIHV AEV E RLTSKGDRGLVR AN++VNQ G +V+ YNPLR+LKR+
Sbjct:    3 AEVLPIVGRGFCFEDLRVGFRFRTHRRTIAESDLANFVNLSWLTEELFAVQEGEMSDASRAIKGRAVPAALVYAFAEGLLLPTMQDTGLAFLNATLDVKGPTLVGDTIHVAAEVIEHRLTSKGDRGLVRFANQVVNQRGESVLEYNPLRLLKRK 156          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A0S8B235_9PROT (Acyl dehydratase n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B235_9PROT)

HSP 1 Score: 208 bits (529), Expect = 6.860e-67
Identity = 102/130 (78.46%), Postives = 116/130 (89.23%), Query Frame = 1
Query:   64 KFRTHRRTIAESDLLAFVNLTWLTEELFTVAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            +FRTHRRT+ E+DL+AFVNLTWLTEELFTV +D  RA+KG+ VPGA+VYAFAEGLLLP+MQDTGLAFL A LD+K  T+VGDTIHVEAEVT  RLTSKGDRGLVR ANR+VNQDG TV+ Y+PLRMLKRR
Sbjct:    2 RFRTHRRTLREADLVAFVNLTWLTEELFTVDDDSQRALKGKVVPGALVYAFAEGLLLPSMQDTGLAFLGATLDVKRSTQVGDTIHVEAEVTAHRLTSKGDRGLVRFANRVVNQDGETVLAYDPLRMLKRR 131          
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Match: A0A1X7DR01_9PROT (Acyl dehydratase n=3 Tax=Azospirillum TaxID=191 RepID=A0A1X7DR01_9PROT)

HSP 1 Score: 195 bits (496), Expect = 1.930e-61
Identity = 100/147 (68.03%), Postives = 114/147 (77.55%), Query Frame = 1
Query:   16 PVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFT-VAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTRVGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKRR 453
            P +G GF FEDLPVG +FRT  RTI ESDL AFVNL+W TEELFT  A+ E  AI GR VP A+VY+F+EGLL  +MQ TGLAFLNAE+D+KAPT VGDTIHV  EV EAR TSK  RGL+RT NR+  QDG  V+TYNPLRML+ R
Sbjct:   11 PTIGLGFHFEDLPVGTRFRTVARTITESDLTAFVNLSWFTEELFTNTADREHMAIAGRVVPAALVYSFSEGLLTASMQRTGLAFLNAEIDVKAPTFVGDTIHVACEVIEARPTSKPGRGLIRTFNRVTRQDGTIVLTYNPLRMLRTR 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18951.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4F6J5_9PROT5.030e-8077.33Acyl dehydratase n=3 Tax=unclassified Betaproteoba... [more]
A0A1F3YTJ4_9PROT9.530e-7976.13Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A1F4B1P5_9PROT2.390e-7877.48Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A536SYH8_9PROT7.080e-7878.23Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A1F4FCW7_9PROT5.080e-7776.19Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A521YVV3_9PROT5.920e-7676.03Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A1F4F317_9PROT9.940e-7676.16Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A537A2V1_9PROT1.560e-7575.97Acyl dehydratase n=2 Tax=unclassified Betaproteoba... [more]
A0A0S8B235_9PROT6.860e-6778.46Acyl dehydratase n=1 Tax=Betaproteobacteria bacter... [more]
A0A1X7DR01_9PROT1.930e-6168.03Acyl dehydratase n=3 Tax=Azospirillum TaxID=191 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18951contigP-wetherbeei_contig18951:776..1231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1007105.PT7_0670
PFAMsMaoC_dehydrat_N
Model size456
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.94e-58
EggNOG OGsCOG2030@1|root,COG2030@2|Bacteria,1RH7U@1224|Proteobacteria,2W98C@28216|Betaproteobacteria,3T7IZ@506|Alcaligenaceae
DescriptionN-terminal half of MaoC dehydratase
Cds size456
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.9678926-CDS-P-wetherbeei_contig18951:775..12311683186159.9678926-CDS-P-wetherbeei_contig18951:775..1231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18951 776..1231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18951.2.1prot_P-wetherbeei_contig18951.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18951 776..1231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18951.2.1

>prot_P-wetherbeei_contig18951.2.1 ID=prot_P-wetherbeei_contig18951.2.1|Name=mRNA_P-wetherbeei_contig18951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MSNTLPVVGRGFCFEDLPVGHKFRTHRRTIAESDLLAFVNLTWLTEELFT
VAEDEGRAIKGRAVPGAMVYAFAEGLLLPTMQDTGLAFLNAELDIKAPTR
VGDTIHVEAEVTEARLTSKGDRGLVRTANRIVNQDGVTVITYNPLRMLKR
R*
back to top

mRNA from alignment at P-wetherbeei_contig18951:776..1231-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18951.2.1 ID=mRNA_P-wetherbeei_contig18951.2.1|Name=mRNA_P-wetherbeei_contig18951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig18951:776..1231- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAACACCCTTCCCGTCGTCGGCCGCGGTTTCTGTTTCGAGGACCT GCCCGTCGGCCACAAGTTCCGCACCCACCGCCGCACCATCGCCGAGAGCG ACCTGCTGGCCTTCGTGAACCTCACCTGGCTCACCGAGGAACTCTTCACG GTAGCCGAGGACGAGGGTCGCGCGATCAAGGGCCGCGCCGTGCCGGGCGC GATGGTGTACGCGTTCGCCGAAGGCCTGCTGCTGCCGACGATGCAGGACA CCGGCCTCGCCTTCCTCAACGCCGAGCTCGACATCAAGGCCCCGACGCGG GTCGGCGACACGATCCATGTGGAGGCCGAGGTCACCGAGGCGCGCCTGAC CTCGAAGGGCGACCGGGGCCTGGTGCGCACGGCCAACCGGATCGTCAACC AGGACGGGGTGACGGTGATCACCTACAACCCGCTGCGGATGCTGAAGCGC AGGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18951:776..1231-

>mRNA_P-wetherbeei_contig18951.2.1 ID=mRNA_P-wetherbeei_contig18951.2.1|Name=mRNA_P-wetherbeei_contig18951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig18951:776..1231- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAACACCCTTCCCGTCGTCGGCCGCGGTTTCTGTTTCGAGGACCT
GCCCGTCGGCCACAAGTTCCGCACCCACCGCCGCACCATCGCCGAGAGCG
ACCTGCTGGCCTTCGTGAACCTCACCTGGCTCACCGAGGAACTCTTCACG
GTAGCCGAGGACGAGGGTCGCGCGATCAAGGGCCGCGCCGTGCCGGGCGC
GATGGTGTACGCGTTCGCCGAAGGCCTGCTGCTGCCGACGATGCAGGACA
CCGGCCTCGCCTTCCTCAACGCCGAGCTCGACATCAAGGCCCCGACGCGG
GTCGGCGACACGATCCATGTGGAGGCCGAGGTCACCGAGGCGCGCCTGAC
CTCGAAGGGCGACCGGGGCCTGGTGCGCACGGCCAACCGGATCGTCAACC
AGGACGGGGTGACGGTGATCACCTACAACCCGCTGCGGATGCTGAAGCGC
AGGTAA
back to top