mRNA_P-wetherbeei_contig1894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1894.1.1
Unique NamemRNA_P-wetherbeei_contig1894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1894contigP-wetherbeei_contig1894:4..2006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2005
Hectar predicted targeting categoryother localisation
Exons1
Cds size1980
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.509458-CDS-P-wetherbeei_contig1894:3..19831683186159.509458-CDS-P-wetherbeei_contig1894:3..1983Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1894 4..1983 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186159.5199838-UTR-P-wetherbeei_contig1894:1983..20061683186159.5199838-UTR-P-wetherbeei_contig1894:1983..2006Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1894 1984..2006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1894.1.1prot_P-wetherbeei_contig1894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1894 4..1983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1894.1.1

>prot_P-wetherbeei_contig1894.1.1 ID=prot_P-wetherbeei_contig1894.1.1|Name=mRNA_P-wetherbeei_contig1894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=660bp
MAFFSNALHALDIFLGAEDLHDVASLSTDSPSAATFGTSLLRSAGDDGVA
SQVTNAEASDILNEVAVDSIFSATTAVSVATAMTLRTAGPPDSHRGVATE
NAEVVDREAPQHPPKVHAAHPERVQRAIEEAERRAQEERQRRAVEADARA
KAVSRAIEEAEARARARAGDRARRQAQARELVSQAEERARRAAAALAGAW
AVEVEAAAEATAGLGRPASNPEMLVPATTTMTLAAATASHLPEQGAPNGG
SGVTGERFAAHFGAPAAAAPSSRSASQRRAGLGLMAPLSNDIAGAAAAKA
AADVVTAERKSHTALPERLRRFPSARDEPDGTEARRTQTGSGFEVPVTRA
PSAPAKLIDDQGGQLKEANSADSEILSLQMAQELRATELLPPTTPPPPAR
KPAASAVKEAAWVQAKAMAARSPDQHQAATGARRPEDRAAASPALSPGLL
ARFIGPRTPSPAASEQASPVEPPPAAAAARAEAAAVGAAAGLPNDDATAP
QDVIRYAAAGLERVATRTTNSGAFDGGQEKTGRTKAAERGGCMGTDAADG
AALHISLEEDDEVGSSRPHIFEKQRAGGKRHGARHSDAHNGFAAAPAAAA
AAAAPHDLCQACMGLWDAGSAIAGRLYRCTACDMVVHAACRSFMQDLSLC
PGAPPDDDDD
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mRNA from alignment at P-wetherbeei_contig1894:4..2006-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1894.1.1 ID=mRNA_P-wetherbeei_contig1894.1.1|Name=mRNA_P-wetherbeei_contig1894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2003bp|location=Sequence derived from alignment at P-wetherbeei_contig1894:4..2006- (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCTCGATTCCGCGCAGTCCATGGCCTTTTTCTCGAACGCCTTGCAC
GCACTCGACATTTTCCTTGGAGCCGAGGATTTACACGACGTCGCGAGTCT
TTCCACGGACTCCCCATCGGCCGCAACTTTTGGTACCAGTCTTCTCAGGT
CGGCAGGTGATGATGGCGTCGCTTCCCAAGTAACGAACGCCGAAGCTTCC
GACATTTTGAACGAGGTTGCGGTTGACAGTATTTTTTCGGCGACGACAGC
CGTTAGCGTCGCCACCGCGATGACACTACGAACTGCAGGTCCTCCTGACT
CTCACCGCGGGGTAGCGACAGAAAATGCCGAAGTTGTTGACAGGGAGGCG
CCACAGCACCCACCAAAAGTCCATGCTGCCCACCCCGAGCGCGTGCAGCG
TGCCATCGAAGAGGCGGAAAGGCGGGCTCAAGAAGAAAGGCAACGCCGCG
CCGTTGAAGCTGACGCCCGCGCCAAGGCCGTGTCGCGCGCCATTGAGGAG
GCCGAAGCGAGGGCCCGCGCTCGTGCCGGAGACCGCGCTCGCCGGCAGGC
GCAGGCACGGGAACTAGTTTCTCAGGCGGAGGAGCGGGCGCGCCGGGCGG
CGGCCGCGCTGGCCGGGGCTTGGGCCGTCGAGGTGGAGGCCGCCGCCGAG
GCGACTGCAGGTTTGGGGCGGCCGGCATCAAATCCGGAAATGCTCGTGCC
TGCGACGACGACAATGACTCTAGCTGCTGCCACGGCATCCCACTTGCCGG
AACAAGGAGCCCCCAACGGTGGCAGCGGCGTAACTGGCGAGCGTTTCGCA
GCACATTTTGGTGCACCGGCTGCAGCAGCGCCCTCTTCAAGATCAGCGTC
GCAGCGACGTGCCGGACTGGGCTTAATGGCGCCGCTGTCGAATGATATTG
CGGGGGCAGCGGCGGCAAAAGCAGCTGCGGACGTCGTGACGGCGGAGCGG
AAAAGTCACACTGCATTACCAGAGCGATTGAGAAGGTTCCCATCTGCAAG
AGACGAGCCAGATGGGACTGAGGCACGACGAACCCAAACGGGTTCGGGAT
TTGAGGTGCCGGTGACGCGAGCGCCATCAGCACCCGCAAAGTTGATCGAT
GACCAGGGCGGGCAGTTGAAAGAGGCAAATTCAGCTGATAGCGAAATCTT
GAGCCTGCAGATGGCGCAGGAATTACGTGCAACAGAGCTGCTGCCACCGA
CGACGCCGCCGCCACCCGCGCGAAAGCCAGCGGCGTCTGCGGTCAAGGAG
GCGGCCTGGGTCCAGGCCAAAGCGATGGCGGCTCGTTCTCCGGATCAGCA
TCAAGCAGCTACTGGTGCCCGGCGCCCCGAAGATAGGGCGGCGGCGAGCC
CGGCGCTATCTCCGGGACTCCTTGCCAGGTTTATTGGACCTCGCACGCCG
TCGCCGGCCGCGTCCGAGCAGGCCTCACCAGTAGAGCCGCCGCCCGCAGC
GGCAGCAGCGAGGGCAGAGGCGGCGGCGGTTGGTGCGGCGGCAGGGTTGC
CAAATGACGATGCGACGGCTCCTCAAGATGTGATCAGATATGCGGCTGCA
GGGCTAGAGAGGGTGGCGACAAGGACGACAAATTCCGGTGCTTTTGACGG
CGGGCAAGAGAAAACTGGAAGGACGAAAGCAGCGGAGCGCGGCGGCTGCA
TGGGGACTGACGCTGCCGATGGAGCGGCGCTGCACATTTCGCTTGAAGAA
GACGACGAAGTTGGCTCGTCGCGGCCTCATATTTTTGAAAAGCAGCGGGC
GGGCGGGAAGCGGCATGGCGCACGGCACAGCGACGCCCATAACGGCTTTG
CCGCGGCACCTGCGGCAGCAGCGGCGGCGGCGGCGCCGCATGACCTCTGC
CAGGCCTGTATGGGGCTTTGGGACGCTGGCAGCGCCATCGCGGGCCGCCT
CTACCGCTGCACCGCGTGCGATATGGTCGTGCACGCCGCCTGCCGCTCCT
TCATGCAGGATTTATCGCTCTGCCCCGGAGCGCCCCCCGATGACGACGAT
GAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1894:4..2006-

>mRNA_P-wetherbeei_contig1894.1.1 ID=mRNA_P-wetherbeei_contig1894.1.1|Name=mRNA_P-wetherbeei_contig1894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1980bp|location=Sequence derived from alignment at P-wetherbeei_contig1894:4..2006- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTTTTCTCGAACGCCTTGCACGCACTCGACATTTTCCTTGGAGC
CGAGGATTTACACGACGTCGCGAGTCTTTCCACGGACTCCCCATCGGCCG
CAACTTTTGGTACCAGTCTTCTCAGGTCGGCAGGTGATGATGGCGTCGCT
TCCCAAGTAACGAACGCCGAAGCTTCCGACATTTTGAACGAGGTTGCGGT
TGACAGTATTTTTTCGGCGACGACAGCCGTTAGCGTCGCCACCGCGATGA
CACTACGAACTGCAGGTCCTCCTGACTCTCACCGCGGGGTAGCGACAGAA
AATGCCGAAGTTGTTGACAGGGAGGCGCCACAGCACCCACCAAAAGTCCA
TGCTGCCCACCCCGAGCGCGTGCAGCGTGCCATCGAAGAGGCGGAAAGGC
GGGCTCAAGAAGAAAGGCAACGCCGCGCCGTTGAAGCTGACGCCCGCGCC
AAGGCCGTGTCGCGCGCCATTGAGGAGGCCGAAGCGAGGGCCCGCGCTCG
TGCCGGAGACCGCGCTCGCCGGCAGGCGCAGGCACGGGAACTAGTTTCTC
AGGCGGAGGAGCGGGCGCGCCGGGCGGCGGCCGCGCTGGCCGGGGCTTGG
GCCGTCGAGGTGGAGGCCGCCGCCGAGGCGACTGCAGGTTTGGGGCGGCC
GGCATCAAATCCGGAAATGCTCGTGCCTGCGACGACGACAATGACTCTAG
CTGCTGCCACGGCATCCCACTTGCCGGAACAAGGAGCCCCCAACGGTGGC
AGCGGCGTAACTGGCGAGCGTTTCGCAGCACATTTTGGTGCACCGGCTGC
AGCAGCGCCCTCTTCAAGATCAGCGTCGCAGCGACGTGCCGGACTGGGCT
TAATGGCGCCGCTGTCGAATGATATTGCGGGGGCAGCGGCGGCAAAAGCA
GCTGCGGACGTCGTGACGGCGGAGCGGAAAAGTCACACTGCATTACCAGA
GCGATTGAGAAGGTTCCCATCTGCAAGAGACGAGCCAGATGGGACTGAGG
CACGACGAACCCAAACGGGTTCGGGATTTGAGGTGCCGGTGACGCGAGCG
CCATCAGCACCCGCAAAGTTGATCGATGACCAGGGCGGGCAGTTGAAAGA
GGCAAATTCAGCTGATAGCGAAATCTTGAGCCTGCAGATGGCGCAGGAAT
TACGTGCAACAGAGCTGCTGCCACCGACGACGCCGCCGCCACCCGCGCGA
AAGCCAGCGGCGTCTGCGGTCAAGGAGGCGGCCTGGGTCCAGGCCAAAGC
GATGGCGGCTCGTTCTCCGGATCAGCATCAAGCAGCTACTGGTGCCCGGC
GCCCCGAAGATAGGGCGGCGGCGAGCCCGGCGCTATCTCCGGGACTCCTT
GCCAGGTTTATTGGACCTCGCACGCCGTCGCCGGCCGCGTCCGAGCAGGC
CTCACCAGTAGAGCCGCCGCCCGCAGCGGCAGCAGCGAGGGCAGAGGCGG
CGGCGGTTGGTGCGGCGGCAGGGTTGCCAAATGACGATGCGACGGCTCCT
CAAGATGTGATCAGATATGCGGCTGCAGGGCTAGAGAGGGTGGCGACAAG
GACGACAAATTCCGGTGCTTTTGACGGCGGGCAAGAGAAAACTGGAAGGA
CGAAAGCAGCGGAGCGCGGCGGCTGCATGGGGACTGACGCTGCCGATGGA
GCGGCGCTGCACATTTCGCTTGAAGAAGACGACGAAGTTGGCTCGTCGCG
GCCTCATATTTTTGAAAAGCAGCGGGCGGGCGGGAAGCGGCATGGCGCAC
GGCACAGCGACGCCCATAACGGCTTTGCCGCGGCACCTGCGGCAGCAGCG
GCGGCGGCGGCGCCGCATGACCTCTGCCAGGCCTGTATGGGGCTTTGGGA
CGCTGGCAGCGCCATCGCGGGCCGCCTCTACCGCTGCACCGCGTGCGATA
TGGTCGTGCACGCCGCCTGCCGCTCCTTCATGCAGGATTTATCGCTCTGC
CCCGGAGCGCCCCCCGATGACGACGATGAT
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