mRNA_P-wetherbeei_contig18916.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18916.2.1
Unique NamemRNA_P-wetherbeei_contig18916.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: A0A5D6Y1D7_9STRA (RNA methyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1D7_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.740e-29
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:    1 ALRPGRPADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQSFEPVV 375
            AL    P+ ++ DL+TCFS TMWIHLN GDDGL + L      A  L++EPQPW+CYRNA++RL R R   PA F ++++R D+ E +  FL     F    PL  T W R + LY+R     +V
Sbjct:  301 ALATRAPSQRQFDLVTCFSVTMWIHLNKGDDGLWKFLERVSDLASHLLIEPQPWKCYRNAQKRLSRMRVEIPASFREIQVRQDVVERIDAFLLAAGRFRFKAPLGKTNWSRPVVLYSRTKIPGLV 425
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: D0MZS5_PHYIT (RNA methyltransferase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MZS5_PHYIT)

HSP 1 Score: 115 bits (289), Expect = 1.810e-28
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:   19 PADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQS 360
            PA+++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQ W+CYRNA++RL R R   P  F ++++R D+ E +  FL     F     L  T W R + LY+R++
Sbjct:  250 PAERKFDLITCFSVTMWIHLNNGDDGLWKFLETVSDMTEHLIIEPQTWKCYRNAQKRLTRMRVDVPQSFREIKVRTDVVEKIDAFLLAAGRFRYKAQLGKTNWSRNVVLYSRKT 363
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: A0A3R7KEP0_9STRA (RNA methyltransferase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KEP0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 7.140e-28
Identity = 57/119 (47.90%), Postives = 72/119 (60.50%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQSFEPVVP 378
            A ++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQPW+CYR A++RL R R   P  F  +++R D+ E +  FL     F     L  T W R + LY+R+S  PVVP
Sbjct:  256 AQRKFDLITCFSVTMWIHLNHGDDGLWKFLEIVSDMTEHLIIEPQPWKCYRTAQKRLMRMRVEIPQSFRQIKVRADVVEKIDTFLLDAGRFRFKAQLGKTNWSRNVVLYSRKSV-PVVP 373
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: W2PSY5_PHYPN (RNA methyltransferase n=16 Tax=Phytophthora TaxID=4783 RepID=W2PSY5_PHYPN)

HSP 1 Score: 113 bits (283), Expect = 1.330e-27
Identity = 53/113 (46.90%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQS 360
            AD++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQ W+CYRNA++RL R R   P  F  +++R D+ E +  FL     F     L  T W R + LY+R++
Sbjct:  250 ADRKFDLITCFSVTMWIHLNNGDDGLWKFLETVSDMTEHLIIEPQTWKCYRNAQKRLTRMRVEVPQSFRKIKVRTDVVEKIDAFLLAAGRFRYKAQLGKTNWSRNVVLYSRKT 362
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: A0A2P4YR21_9STRA (RNA methyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YR21_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.370e-27
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQ 357
            A+++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQ W+CYRNA++RL R R   P  F ++++R D+ E +  FL     F     L  T W R + LY+R+
Sbjct:  252 AERKFDLITCFSVTMWIHLNNGDDGLWKFLETVSDMTEHLIIEPQTWKCYRNAQKRLTRMRVEVPKSFREIKVRADVVEKIDAFLLAAGRFRYKAQLGKTNWSRNVVLYSRK 363
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: G4YH69_PHYSP (RNA methyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=G4YH69_PHYSP)

HSP 1 Score: 113 bits (282), Expect = 1.970e-27
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQ 357
            A+++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQ W+CYRNA  RL+R R   P  F ++++R D+ E +  FL     F     L  T W R + LY+R+
Sbjct:  254 AERKFDLITCFSVTMWIHLNNGDDGLWKFLETVSDMTEHLIIEPQTWKCYRNAHTRLKRMRVEVPRSFKEIKVRTDVVEKIDAFLLAAGRFRFKAQLGKTNWSRNVVLYSRR 365
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: A0A3R7HNQ3_9STRA (RNA methyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HNQ3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.950e-27
Identity = 53/113 (46.90%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQS 360
            A ++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQPW+CYR A++RL R R   P  F  +++R D+ E +  FL     F     L  T W R + LY+R+S
Sbjct:  256 AQRKFDLITCFSVTMWIHLNHGDDGLWKFLEIVSDMTEHLIIEPQPWKCYRTAQKRLMRMRVEIPQSFRQIKVRADVVEKIDTFLLDAGRFRFKAQLGKTNWSRNVVLYSRKS 368
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: A0A3M6VGL5_9STRA (RNA methyltransferase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGL5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.500e-26
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLYTRQ 357
            ++++ D++TCFS TMWIHLN GDDGL + L       E LI+EPQ W+CYRNA++RL+R R   P  F ++++R D+ E +  FL     F     L  T W R + LY+R+
Sbjct:  256 SERKFDVVTCFSVTMWIHLNNGDDGLWKFLETVSDMTEHLIIEPQTWKCYRNAQKRLKRMRVEVPQSFREIKVRTDVVERIDAFLLAAGRFRYKAQLGKTNWSRNVVLYSRK 367
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: A0A225WUM2_9STRA (RNA methyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WUM2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.690e-26
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:   22 ADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLY 348
            A+++ DLITCFS TMWIHLN GDDGL + L       E LI+EPQ W+CYRNA++RL R     P  F ++++R D+ E +  FL     F     L  T W R + LY
Sbjct:  250 AERKFDLITCFSVTMWIHLNNGDDGLWKFLETVSDMTEHLIIEPQTWKCYRNAQKRLTRMHVEVPKSFSEIKVRADVVEKIDAFLLAAGRFRYKAQLGKTNWSRNVVLY 358
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BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Match: UPI000719D966 (pre-miRNA 5'-monophosphate methyltransferase-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D966)

HSP 1 Score: 107 bits (266), Expect = 4.520e-26
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:   31 RVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVEPQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTVATPLAATKWKRVITLY 348
            ++D+  CFS TMWIHL  GDDGLKR L     R + L++EPQPW+CY++A  R+R+       HF +L++R  +EE++  FL    S  V     +T+WKR +TLY
Sbjct:  138 KLDITFCFSITMWIHLQNGDDGLKRFLKEVALRTQYLLIEPQPWKCYKSAMRRVRKLDCDDFVHFKNLKLRNQVEEEINNFLKYQCSMEVMAQFGSTRWKRKLTLY 243
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18916.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6Y1D7_9STRA2.740e-2944.80RNA methyltransferase n=1 Tax=Pythium brassicum Ta... [more]
D0MZS5_PHYIT1.810e-2846.49RNA methyltransferase n=1 Tax=Phytophthora infesta... [more]
A0A3R7KEP0_9STRA7.140e-2847.90RNA methyltransferase n=2 Tax=Phytophthora kernovi... [more]
W2PSY5_PHYPN1.330e-2746.90RNA methyltransferase n=16 Tax=Phytophthora TaxID=... [more]
A0A2P4YR21_9STRA1.370e-2746.43RNA methyltransferase n=1 Tax=Phytophthora palmivo... [more]
G4YH69_PHYSP1.970e-2746.43RNA methyltransferase n=4 Tax=Phytophthora TaxID=4... [more]
A0A3R7HNQ3_9STRA3.950e-2746.90RNA methyltransferase n=3 Tax=Phytophthora kernovi... [more]
A0A3M6VGL5_9STRA1.500e-2643.75RNA methyltransferase n=1 Tax=Peronospora effusa T... [more]
A0A225WUM2_9STRA2.690e-2645.87RNA methyltransferase n=1 Tax=Phytophthora megakar... [more]
UPI000719D9664.520e-2644.34pre-miRNA 5'-monophosphate methyltransferase-like ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18916contigP-wetherbeei_contig18916:678..1106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_03262T0
PFAMsBin3,dsrm
Model size378
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.97e-29
EggNOG OGsKOG2899@1|root,KOG2899@2759|Eukaryota,3QCY4@4776|Peronosporales
DescriptionDouble-stranded RNA binding motif
Cds size378
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.8947153-CDS-P-wetherbeei_contig18916:677..7771683186158.8947153-CDS-P-wetherbeei_contig18916:677..777Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18916 678..777 -
1683186158.903109-CDS-P-wetherbeei_contig18916:828..11061683186158.903109-CDS-P-wetherbeei_contig18916:828..1106Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18916 829..1106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18916.2.1prot_P-wetherbeei_contig18916.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18916 678..1106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18916.2.1

>prot_P-wetherbeei_contig18916.2.1 ID=prot_P-wetherbeei_contig18916.2.1|Name=mRNA_P-wetherbeei_contig18916.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
ALRPGRPADQRVDLITCFSTTMWIHLNGGDDGLKRVLTAFVARAEALIVE
PQPWRCYRNARERLRRRRRPPPAHFDDLRMRGDIEEDVQRFLFGGDSFTV
ATPLAATKWKRVITLYTRQSFEPVVP
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mRNA from alignment at P-wetherbeei_contig18916:678..1106-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18916.2.1 ID=mRNA_P-wetherbeei_contig18916.2.1|Name=mRNA_P-wetherbeei_contig18916.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig18916:678..1106- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGCGCCCGGGAAGACCGGCCGACCAGCGGGTCGACCTGATCACTTG
CTTTTCCACCACAATGTGGATACACCTCAACGGCGGCGACGATGGCCTGA
AACGAGTCCTGACCGCCTTTGTGGCCCGCGCCGAGGCGCTCATCGTCGAG
CCGCAGCCGTGGCGCTGCTACCGAAATGCTCGCGAGCGCTTGCGGAGGCG
GCGGCGGCCCCCGCCGGCGCACTTTGACGACCTGCGAATGCGTGGGGACA
TCGAGGAGGACGTTCAGCGGTTTCTTTTGTCGCCGGAATGCAGCGGCGGC
GGCCCTGGCGGCGGTGGTGGCGGCGGCAGCGGTGGTGACTCGTTCACTGT
CGCGACGCCGCTCGCCGCGACAAAGTGGAAGCGCGTCATCACGCTGTATA
CAAGGCAGTCGTTTGAGCCTGTCGTTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18916:678..1106-

>mRNA_P-wetherbeei_contig18916.2.1 ID=mRNA_P-wetherbeei_contig18916.2.1|Name=mRNA_P-wetherbeei_contig18916.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig18916:678..1106- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTGCGCCCGGGAAGACCGGCCGACCAGCGGGTCGACCTGATCACTTG
CTTTTCCACCACAATGTGGATACACCTCAACGGCGGCGACGATGGCCTGA
AACGAGTCCTGACCGCCTTTGTGGCCCGCGCCGAGGCGCTCATCGTCGAG
CCGCAGCCGTGGCGCTGCTACCGAAATGCTCGCGAGCGCTTGCGGAGGCG
GCGGCGGCCCCCGCCGGCGCACTTTGACGACCTGCGAATGCGTGGGGACA
TCGAGGAGGACGTTCAGCGGTTTCTTTTCGGTGGTGACTCGTTCACTGTC
GCGACGCCGCTCGCCGCGACAAAGTGGAAGCGCGTCATCACGCTGTATAC
AAGGCAGTCGTTTGAGCCTGTCGTTCCC
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