mRNA_P-wetherbeei_contig18909.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A835ZAV4_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV4_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.500e-32 Identity = 55/87 (63.22%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 43 CPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
CPTCG YG + G QP GTM V TS C G+ G GTI I+Y+FS+GIQG +HP PGQ Y+GT RVAYLPD+P+GR VL LLQ CF
Sbjct: 1 CPTCGIMYGSVIGDQPEGTMNVTTSPHMHCSGYAGAGTIVINYAFSSGIQGPKHPHPGQRYSGTSRVAYLPDTPDGRAVLALLQRCF 87
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: D8LIP8_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP8_ECTSI) HSP 1 Score: 124 bits (311), Expect = 8.570e-32 Identity = 61/101 (60.40%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCP--GFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
CI+Q FK MGPKCPTC K YG L G QP GTMTV T R + P G+E GTI I YSF +G Q +HP+PG AY GT R AYLPD+ GREVL LL+ F
Sbjct: 258 CIMQVFKAMGPKCPTCSKMYGPLHGDQPDGTMTVRTHRRGAIPLSGYESDGTILIQYSFPSGTQSSKHPNPGSAYHGTSRTAYLPDNAAGREVLALLRKSF 358
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: UPI001B887A1A (E3 ubiquitin-protein ligase DTX4-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887A1A) HSP 1 Score: 121 bits (303), Expect = 4.740e-30 Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGT-SDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
R CI + F+ P CP+C YG++ G QPPG+MT T SDR PG+E + TI I+YSFSNGIQ +HP PG+ Y GTHR AYLPDSP+GR+V RLLQ F
Sbjct: 403 RACIDKCFQTFKPICPSCNTVYGIIMGDQPPGSMTCTTASDR--LPGYEQYSTIVINYSFSNGIQTKDHPHPGKLYYGTHRTAYLPDSPDGRKVRRLLQKAF 502
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A7S2XY22_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY22_9STRA) HSP 1 Score: 110 bits (274), Expect = 5.050e-29 Identity = 54/101 (53.47%), Postives = 63/101 (62.38%), Query Frame = 1
Query: 7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCP--GFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
CI R P CP CG Y V+ G P GTM V + CP G E HGTI ISY F +G QG +HP+PG+ Y GT R A+LPD+PEG E+LRLLQ CF
Sbjct: 3 CIRMALNRK-PVCPCCGVAYAVVTGDMPQGTMQVDRAPVGGCPLAGHEAHGTIFISYQFPSGTQGPQHPNPGRPYHGTSRFAFLPDTPEGNEMLRLLQICF 102
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A1S3IUP6_LINUN (RING-type E3 ubiquitin transferase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IUP6_LINUN) HSP 1 Score: 117 bits (294), Expect = 1.290e-28 Identity = 59/101 (58.42%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
+ CI FK P CPTCG YG L G P GTMTV + + PG G GTI I+YSFS GIQ +HP+PG+ Y GT RVAYLPDSPEGR+VL LLQ F
Sbjct: 1593 KECIDNCFKLHKPACPTCGTLYGTLTGNMPEGTMTV-SKEWAPLPGHGGFGTIVITYSFSGGIQQDDHPNPGRHYRGTTRVAYLPDSPEGRKVLNLLQKAF 1692
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A6G0IJ93_LARCR (E3 ubiquitin-protein ligase n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IJ93_LARCR) HSP 1 Score: 116 bits (290), Expect = 1.570e-28 Identity = 56/101 (55.45%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
R C+ Q F P CPTCGK YGVL GTQP G T S PG+E +GT+TI Y NGIQ EHP PGQ Y G R AYLPDSPEG+E+++LL+ F
Sbjct: 307 RNCLKQAFGYK-PVCPTCGKLYGVLTGTQPDGGKMTVTKSSSSLPGYEKYGTLTIHYYIPNGIQKEEHPQPGQQYEGVSRTAYLPDSPEGKEIVKLLKRAF 406
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: H3CAI3_TETNG (E3 ubiquitin-protein ligase n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CAI3_TETNG) HSP 1 Score: 110 bits (274), Expect = 3.160e-28 Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
C+ + F + P CPTCG+ YGVLRGTQP G + S PG+E +GTI I YS +GIQ EHPSPG+ Y+G R A+LPD PEGR VLRLL+ F
Sbjct: 36 CLGRAFLQK-PVCPTCGRVYGVLRGTQPEGGRMEVSRTHSSLPGYEQYGTIVIRYSIPSGIQQEEHPSPGEPYSGASRRAFLPDCPEGRRVLRLLRKAF 133
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: UPI001CF4003F (probable E3 ubiquitin-protein ligase DTX3 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4003F) HSP 1 Score: 112 bits (281), Expect = 3.520e-28 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1
Query: 7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
C+ Q +CP C + G LRG QPPG MT + S PG+EG+GTI I+YSF +GIQG EHP+PGQ+Y GT RVAYLP++PEG EVL+LL+ F
Sbjct: 152 CLQQALDACN-RCPVCQEPQGALRGNQPPGNMTSRVIPQ-SVPGYEGYGTIVINYSFQSGIQGREHPNPGQSYGGTSRVAYLPNTPEGCEVLQLLRRAF 248
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A8C5EMD3_9TELE (E3 ubiquitin-protein ligase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EMD3_9TELE) HSP 1 Score: 114 bits (284), Expect = 9.070e-28 Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 7 CIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
C+ Q F+ P CPTCG YGVL+GTQP G T R S PGFE +GTI ISY G+QG EHP+PGQ Y G +R AYLPDS EG+ VL+LL+ F
Sbjct: 287 CLDQAFQYK-PVCPTCGALYGVLKGTQPKGGRMSVTKMRESLPGFEKYGTIVISYFIPGGVQGQEHPNPGQHYDGLNRAAYLPDSTEGKAVLKLLERAF 384
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Match: A0A3Q3F278_9LABR (E3 ubiquitin-protein ligase n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3F278_9LABR) HSP 1 Score: 108 bits (271), Expect = 9.660e-28 Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 RRCIIQTFKRMGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSNGIQGVEHPSPGQAYAGTHRVAYLPDSPEGREVLRLLQTCF 303
R C+ + F P CPTCG YGVL GTQP G T+ S PG+E +GT+ I+Y +GIQ EHP+PGQ Y G +R AYLPDS EGR +L+LLQ F
Sbjct: 39 RDCLKKAFTYK-PICPTCGALYGVLTGTQPDGGTMKVTTAPSSLPGYESYGTVIINYYIPSGIQNKEHPNPGQPYEGVYRTAYLPDSTEGRHILKLLQRAF 138 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18909.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18909.1.1 >prot_P-wetherbeei_contig18909.1.1 ID=prot_P-wetherbeei_contig18909.1.1|Name=mRNA_P-wetherbeei_contig18909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp MGPKCPTCGKGYGVLRGTQPPGTMTVGTSDRHSCPGFEGHGTITISYSFSback to top mRNA from alignment at P-wetherbeei_contig18909:160..763- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18909.1.1 ID=mRNA_P-wetherbeei_contig18909.1.1|Name=mRNA_P-wetherbeei_contig18909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=604bp|location=Sequence derived from alignment at P-wetherbeei_contig18909:160..763- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18909:160..763- >mRNA_P-wetherbeei_contig18909.1.1 ID=mRNA_P-wetherbeei_contig18909.1.1|Name=mRNA_P-wetherbeei_contig18909.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig18909:160..763- (Phaeothamnion wetherbeei SAG_119_79)back to top |