mRNA_P-wetherbeei_contig18893.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18893.1.1
Unique NamemRNA_P-wetherbeei_contig18893.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: H6SIE2_PARPM (Uncharacterized protein (Fragment) n=3 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE2_PARPM)

HSP 1 Score: 124 bits (312), Expect = 2.270e-35
Identity = 62/78 (79.49%), Postives = 67/78 (85.90%), Query Frame = 2
Query:    2 GTGQASDPIRRLTTSQSPVFLVNSRNPLVCAPSTWLPK*KASFFRRYGGNLPSSLSRVLSSALVCSTSPPVSVWGTVY 235
            GTGQASDPIRRL TSQ PVFLVNSR+PLVCAPS WLPK +A F R YGG LPSS + +LSSALV STSPPVSVWGTV+
Sbjct:    3 GTGQASDPIRRLATSQGPVFLVNSRHPLVCAPSPWLPKTRAPFSRSYGGILPSSFNTILSSALVYSTSPPVSVWGTVH 80          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A2S2NGY3_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NGY3_SCHGA)

HSP 1 Score: 120 bits (302), Expect = 6.410e-34
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    1 RHRAGVRPYTSSYDFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLG 225
            RHRAGVRPYTSS DFAEPCVFSKQS PPGLCP  L+AQ  GLLL  +RR FAEFLK  SLKRLG+LYQSTCVG G
Sbjct:   33 RHRAGVRPYTSSCDFAEPCVFSKQSPPPGLCPRPLLAQKPGLLLANLRRYFAEFLKCGSLKRLGILYQSTCVGFG 107          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A6A5L776_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L776_LUPAL)

HSP 1 Score: 115 bits (289), Expect = 5.060e-31
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 RHRAGVRPYTSSYDFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLGYGL 234
            +HRAGVRPYTSS DFAEPCVF KQS PPGLC   ++A I   LLPK+R QFAEFL+ SSLKRLG+LY +TCVG GYGL
Sbjct:   88 QHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFGYGL 165          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A0H5RFD0_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RFD0_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.060e-27
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   40 DFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLGYGL 234
            D AEPCVF+KQS PPGLCP   VA + GLLLPKVRRQFAEFL+ +SLKRLG+LY STCVGLGYGL
Sbjct:    7 DLAEPCVFAKQSLPPGLCPPQKVALMWGLLLPKVRRQFAEFLQDTSLKRLGILYHSTCVGLGYGL 71          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 109 bits (272), Expect = 1.110e-26
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 RHRAGVRPYTSSYDFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLG 225
            +HRAGVRPYTSS DFAEPCVF KQS PPGLC   ++A I   LLPK+R QFAEFL+ SSLKRLG+LY +TCVG G
Sbjct:  172 QHRAGVRPYTSSCDFAEPCVFDKQSLPPGLCHPKILAYIGVTLLPKLRVQFAEFLQHSSLKRLGILYLTTCVGFG 246          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A6A5L5E7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5E7_LUPAL)

HSP 1 Score: 102 bits (253), Expect = 1.550e-23
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   40 DFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLGYGL 234
            DFAEPCV  KQS PPGLCP   +A   GLL+PK+RRQ AEFL+ SSLKRLG+LYQSTCVG GYGL
Sbjct:  278 DFAEPCVLDKQSPPPGLCPSARLASNRGLLIPKLRRQIAEFLQHSSLKRLGILYQSTCVGFGYGL 342          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL)

HSP 1 Score: 102 bits (253), Expect = 1.680e-23
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   40 DFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLGYGL 234
            DFAEPCV  KQS PPGLCP   +A   GLL+PK+RRQ AEFL+ SSLKRLG+LYQSTCVG GYGL
Sbjct:  329 DFAEPCVLDKQSPPPGLCPSARLASNRGLLIPKLRRQIAEFLQHSSLKRLGILYQSTCVGFGYGL 393          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A6A5L1U4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 102 bits (253), Expect = 1.760e-23
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   40 DFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLGYGL 234
            DFAEPCV  KQS PPGLCP   +A   GLL+PK+RRQ AEFL+ SSLKRLG+LYQSTCVG GYGL
Sbjct:  287 DFAEPCVLDKQSPPPGLCPSARLASNRGLLIPKLRRQIAEFLQHSSLKRLGILYQSTCVGFGYGL 351          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A382BNH5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382BNH5_9ZZZZ)

HSP 1 Score: 88.2 bits (217), Expect = 2.570e-21
Identity = 52/79 (65.82%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 RHRAGVRPYTSSYDFAEPCVFSKQSQPPGLC-PFYLVAQ---IEGL-LLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGL 222
            RHRAGV PYTSSY+FAE  VF+KQSQPP  C PF L  Q   + G  LLPK+R  FAEFL  S LKRLG+L  STCVGL
Sbjct:    1 RHRAGVTPYTSSYEFAECYVFNKQSQPPLCCNPFPLQPQGLHVSGAHLLPKLRCHFAEFLHPSCLKRLGLLALSTCVGL 79          
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Match: A0A2L2YE92_PARTP (Uncharacterized protein (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YE92_PARTP)

HSP 1 Score: 85.9 bits (211), Expect = 9.720e-20
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 RHRAGVRPYTSSYDFAEPCVFSKQSQPPGLC-PFYLVAQIE---GLLLPKVRRQFAEFLKQSSLKRLGMLYQSTCVGLGYG 231
            +HRAGV PYTS++ FAE CVF+KQSQPP  C PF L   +      LLPK+R QFAEFL  SSLKRL +L   T VGL YG
Sbjct:   54 QHRAGVTPYTSTFVFAECCVFNKQSQPPIFCNPFMLRCSLHTNRAHLLPKLRCQFAEFLLLSSLKRLRILISRTSVGLRYG 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18893.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6SIE2_PARPM2.270e-3579.49Uncharacterized protein (Fragment) n=3 Tax=Pararho... [more]
A0A2S2NGY3_SCHGA6.410e-3480.00Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
A0A6A5L776_LUPAL5.060e-3173.08Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A0H5RFD0_9EUKA1.060e-2778.46Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A6A5KV19_LUPAL1.110e-2672.00Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L5E7_LUPAL1.550e-2373.85Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L269_LUPAL1.680e-2373.85Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L1U4_LUPAL1.760e-2373.85Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A382BNH5_9ZZZZ2.570e-2165.82Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A2L2YE92_PARTP9.720e-2060.49Uncharacterized protein (Fragment) n=1 Tax=Paraste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18893contigP-wetherbeei_contig18893:2..238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1089548.KI783301_gene3307
Model size237
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.41e-17
EggNOG OGs2B9ZZ@1|root,323DM@2|Bacteria,1V6N4@1239|Firmicutes,4IRDZ@91061|Bacilli
DescriptionCOG NOG15344 non supervised orthologous group
Cds size237
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.967951-CDS-P-wetherbeei_contig18893:1..2381683186157.967951-CDS-P-wetherbeei_contig18893:1..238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18893 2..238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18893.1.1prot_P-wetherbeei_contig18893.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18893 2..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18893.1.1

>prot_P-wetherbeei_contig18893.1.1 ID=prot_P-wetherbeei_contig18893.1.1|Name=mRNA_P-wetherbeei_contig18893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
RHRAGVRPYTSSYDFAEPCVFSKQSQPPGLCPFYLVAQIEGLLLPKVRRQ
FAEFLKQSSLKRLGMLYQSTCVGLGYGL*
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mRNA from alignment at P-wetherbeei_contig18893:2..238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18893.1.1 ID=mRNA_P-wetherbeei_contig18893.1.1|Name=mRNA_P-wetherbeei_contig18893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig18893:2..238+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTACGACTTCGCAGA GCCCTGTGTTTTTAGTAAACAGTCGCAACCCCCTGGTTTGTGCCCCTTCT ACTTGGTTGCCCAAATAGAAGGCCTCCTTCTTCCGAAGGTACGGAGGCAA TTTGCCGAGTTCCTTAAGCAGAGTTCTCTCAAGCGCCTTGGTATGCTCTA CCAGTCCACCTGTGTCGGTTTGGGGTACGGTCTATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18893:2..238+

>mRNA_P-wetherbeei_contig18893.1.1 ID=mRNA_P-wetherbeei_contig18893.1.1|Name=mRNA_P-wetherbeei_contig18893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig18893:2..238+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTTACGACTTCGCAGA
GCCCTGTGTTTTTAGTAAACAGTCGCAACCCCCTGGTTTGTGCCCCTTCT
ACTTGGTTGCCCAAATAGAAGGCCTCCTTCTTCCGAAGGTACGGAGGCAA
TTTGCCGAGTTCCTTAAGCAGAGTTCTCTCAAGCGCCTTGGTATGCTCTA
CCAGTCCACCTGTGTCGGTTTGGGGTACGGTCTATAA
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