mRNA_P-wetherbeei_contig1889.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1889.2.1
Unique NamemRNA_P-wetherbeei_contig1889.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1889.2.1 vs. uniprot
Match: D8LIP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP6_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.230e-17
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  598 LDWDFYWTPQCLMRSANYWLVVVLGVTVIVMRDLAWKAAHRWWSPKLHHVLAEMEVGGLQDVCLPPELRRTLVAHDAIERVVSADASVRM 867
            +DW+++     L +  NYW V + GV  ++MRD+AWK  HRWW+PKLHHVL EME G L+D+ LP  LRR+   H    +VV  D S R+
Sbjct:   14 IDWEWFGVQTALFKDPNYWAVTMFGVIGVLMRDVAWKGYHRWWNPKLHHVLVEMEKGHLEDIDLPRSLRRSYSLH----QVVQEDTSTRV 99
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BLAST of mRNA_P-wetherbeei_contig1889.2.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 9.500e-16
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = 1 
Query:  397 LGGARDSNGTTPSVAMMGQAAFTIMTLAVNAKMFFVQKRWHIVEAAVLLLSTGSLFAGSALLGVLMELDWDFYWTPQCLMRSANYWLVVVLGVTVIVMRDLAWKAAHRWWSPKLHHVLAEME 762
            L G    +GT  S  + G   F+++ L  N+K+ ++Q RW    A +++ S  + F  + +L +L ++D+DF+     L+ +  +W VV L  T + MRDL+WK  HRWW PKLHH++ E+E
Sbjct: 1193 LKGGPGDDGTEVSYMLYGGTTFSLVVLLANSKILWLQYRWTWWAAVLVVASVLAWFGTACVLNILHKVDFDFFMVFFHLIVNPTFWAVVTLCFTAVAMRDLSWKFYHRWWQPKLHHLILEVE 1314
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BLAST of mRNA_P-wetherbeei_contig1889.2.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.130e-15
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:  400 GGARDSNGTTPSVAMMGQAAFTIMTLAVNAKMFFVQKRWHIVEAAVLLLSTGSLFAGSALLGVLMELDWDFYWTPQCLMRSANYWLVVVLGVTVIVMRDLAWKAAHRWWSPKLHHVLAEME 762
            GG  D +G   S    G   F+++ L  N+K+ ++Q RW    A +++ S  + F  + +L +L ++D+DF+     LM +  +W VV L  T + MRDL+WK  HRWW PKLHH++ E+E
Sbjct: 1333 GGPAD-DGAEVSYMFYGGTTFSLVVLLANSKILWLQYRWTWWAAVLVMASVLAWFGTACVLNILHKVDFDFFMVFFHLMVNPTFWAVVTLCFTAVAMRDLSWKFYHRWWQPKLHHLILEVE 1452
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BLAST of mRNA_P-wetherbeei_contig1889.2.1 vs. uniprot
Match: D7G0C0_ECTSI (PhoLip_ATPase_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C0_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.430e-13
Identity = 39/114 (34.21%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:  421 GTTPSVAMMGQAAFTIMTLAVNAKMFFVQKRWHIVEAAVLLLSTGSLFAGSALLGVLMELDWDFYWTPQCLMRSANYWLVVVLGVTVIVMRDLAWKAAHRWWSPKLHHVLAEME 762
            G   S    G   F+++ + V  KMF+VQ RW  +   V+++S  + F  S L+   + ++WD++     L++S  YW V++  + V+V RD A K  HRWW P+LHH++ E +
Sbjct:    2 GVVTSTYDYGTLTFSLVVIQVTLKMFWVQYRWTRIHVLVMMVSIYAFFLSSFLVNAWVPINWDYHGVFYALLQSKPYWAVMIWCLVVVVGRDWASKFHHRWWRPRLHHLMLESD 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1889.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIP6_ECTSI1.230e-1747.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPG5_9PHAE9.500e-1636.07P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D7FU18_ECTSI2.130e-1537.19Phospholipid-transporting ATPase, putative n=1 Tax... [more]
D7G0C0_ECTSI1.430e-1334.21PhoLip_ATPase_C domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1889contigP-wetherbeei_contig1889:3961..6483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU18
PFAMsCation_ATPase,E1-E2_ATPase,Hydrolase,PhoLip_ATPase_C,PhoLip_ATPase_N
Model size2022
Max annot lvl2759|Eukaryota
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.14e-16
EggNOG OGsCOG0474@1|root,KOG0206@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_003180.1
EC3.6.3.1
Descriptionphospholipid-translocating ATPase activity
Cds size1698
COG categoryP
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.804533-UTR-P-wetherbeei_contig1889:3960..41131683186157.804533-UTR-P-wetherbeei_contig1889:3960..4113Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1889 3961..4113 -
1683186157.8569129-UTR-P-wetherbeei_contig1889:6312..64831683186157.8569129-UTR-P-wetherbeei_contig1889:6312..6483Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1889 6313..6483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.8149405-CDS-P-wetherbeei_contig1889:4113..53461683186157.8149405-CDS-P-wetherbeei_contig1889:4113..5346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1889 4114..5346 -
1683186157.8239622-CDS-P-wetherbeei_contig1889:5635..58181683186157.8239622-CDS-P-wetherbeei_contig1889:5635..5818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1889 5636..5818 -
1683186157.8424773-CDS-P-wetherbeei_contig1889:6030..63121683186157.8424773-CDS-P-wetherbeei_contig1889:6030..6312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1889 6031..6312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1889.2.1prot_P-wetherbeei_contig1889.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1889 4114..6312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1889.2.1

>prot_P-wetherbeei_contig1889.2.1 ID=prot_P-wetherbeei_contig1889.2.1|Name=mRNA_P-wetherbeei_contig1889.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=566bp
MMKLRSHGRSKPGCSRHRRPSPPHCIFTGTDWCCCPSGTTAAFLPPAARF
LPPVIFLYLKGVGEGVWVAVLVSYGLGGARDSNGTTPSVAMMGQAAFTIM
TLAVNAKMFFVQKRWHIVEAAVLLLSTGSLFAGSALLGVLMELDWDFYWT
PQCLMRSANYWLVVVLGVTVIVMRDLAWKAAHRWWSPKLHHVLAEMEVGG
LQDVCLPPELRRTLVAHDAIERVVSADASVRMDGAHSARSTTLSSRLGGF
GFGGGGGVGSGTGIGGGGGFGGGGTGTGGGGGFSGGGNFGSSGGGAFGAA
GLGATDRSGGSGVSGSSGGAASGVGSGRWAVELPAVLPAALPLKGGRASL
PGGGGGGGGLNGIGLAQDGVVWSAASTPGRGLPATLFGGAAAGTGKPPLA
LPRGSSPPPLSPGAFGGNGGGGPMPLWMMTAAVGQLAPRRSDEASGRSAC
AYSYDQLTAQGEIDMITGMRPSSFRAQRESLRSRRPPPQLRPASSSPDLL
AVFRSAEGGGDGGGSGGGSAGSDDGGGDKDGLGNGASSGGNNGEPAPGWQ
SDSVLRGVPPDKHSE*
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mRNA from alignment at P-wetherbeei_contig1889:3961..6483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1889.2.1 ID=mRNA_P-wetherbeei_contig1889.2.1|Name=mRNA_P-wetherbeei_contig1889.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2523bp|location=Sequence derived from alignment at P-wetherbeei_contig1889:3961..6483- (Phaeothamnion wetherbeei SAG_119_79)
GCTCGAAACCAAGACCCGATGTTATTCGGGTCATTTAGGCTCTAGGGGTT
AGGGTCTCACGTTTCGGCTGCGTACAGTGCGCTGGTGATTGCTAGCTTTT
ATGGTAAGCTCGTGTACGTAAGGTGTTGCTGTTGGTGCGGTGATGGTGTT
TAAAGCGTTGCGTATAGTGAGATGATGAAACTGCGTTCGCACGGCCGTTC
CAAGCCGGGCTGCTCTAGACACCGCCGTCCGTCTCCCCCTCATTGTATCT
TTACTGGCACCGATTGGTGCTGCTGCCCTTCTGGTACGACCGCCGCCTTC
CTGCCCCCTGCTGCCCGTTTCCTGCCGCCTGTTATCTTTCTTTATCTTAA
GGGTGTCGGAGAGGGCGTGTGGGTGGCGGTGCTCGTGAGCTATGGCCTCG
GCGGCGCTCGCGACTCCAACGGGACAACCCCTTCCGTCGCCATGATGGGA
CAGGTGGGGAACGTTGCATTCAGTGCACTGGAACCATGCGGGGAGGCGCT
GCGAACAGCAGTACTGGTTTCAGGGGAGTGAGACGAATTCATCTTGTCTT
TCCGCCTTCCTTTGCGTGTAGCCCTTCCTTTATTCTTTTCTTCAACATTA
TATTATGCATTACCTGTTACTTTCATAAAGCACCTTTTCTGTTTCCTCGT
TGTGCTTTTCTCCAGGCGGCCTTCACGATCATGACGCTGGCTGTGAACGC
CAAGATGTTCTTTGTGCAGAAGCGGTGGCACATTGTCGAGGCGGCGGTGC
TGCTGCTGTCGACGGGGTCGCTCTTCGCTGGGTCGGCGCTGCTCGGTGTG
CTGATGGAGCTCGACTGGGACTTCTACTGGACGCCACAGTGCCTCATGGT
CGGTTTCAGTCAGTCCGGGTACAGCATAGTCGACCCAGGGTTCTTGTGGT
GCCTTTCCTTCTCCTCTTCTTCCGTGGGTGCGGAGAGGTGGCTGTCGTCA
AGTATCGTTGTTTTCAAGAGTCCTTTGGCATGGCATGGTCCATGCTCGTT
CCTGTCGTCTCAGAATGCTCAGGAAGCATTTCTGCCCGAAGCTGTCTGTG
GTTCGGCCACCACAAACATGCTCTCCGTAGACTCCAACACTCTCCTTTCT
GTTTCTTCCCCATTCCCTTCCCCTTCTTTTCCTGCAGCGGAGCGCCAACT
ATTGGTTGGTCGTTGTGCTTGGCGTCACCGTCATCGTCATGCGCGACCTC
GCCTGGAAGGCCGCCCACCGCTGGTGGTCTCCCAAGCTGCATCACGTCCT
GGCCGAGATGGAGGTCGGAGGCCTTCAGGATGTCTGCCTGCCACCGGAGC
TGCGGCGGACGCTCGTCGCGCACGACGCGATCGAGCGCGTCGTGTCGGCG
GATGCGTCGGTGCGGATGGACGGCGCGCACTCAGCGCGGTCAACGACGCT
GTCGTCGCGGCTGGGCGGCTTCGGCTTCGGCGGCGGCGGCGGTGTCGGCA
GCGGCACGGGTATAGGCGGAGGCGGCGGCTTTGGCGGCGGCGGCACGGGT
ACAGGCGGAGGCGGCGGCTTTAGCGGCGGCGGCAATTTTGGGAGCAGTGG
CGGCGGAGCCTTCGGAGCGGCCGGGCTGGGCGCCACCGACCGCAGCGGCG
GCAGCGGCGTCAGCGGCAGCAGCGGCGGCGCCGCCAGCGGGGTCGGCAGC
GGGCGGTGGGCGGTGGAGCTGCCGGCGGTGTTGCCAGCGGCGCTCCCGCT
GAAAGGGGGGCGGGCCTCGCTTCCTGGGGGCGGCGGCGGCGGCGGCGGCC
TGAATGGCATCGGACTGGCGCAGGACGGGGTCGTGTGGTCCGCGGCCTCC
ACGCCGGGGCGTGGCCTCCCGGCGACGTTGTTCGGCGGCGCCGCGGCGGG
CACGGGGAAACCACCGCTGGCGCTGCCGCGAGGGAGCTCCCCGCCGCCCT
TGTCGCCCGGGGCCTTCGGCGGCAACGGCGGCGGCGGCCCAATGCCGCTG
TGGATGATGACAGCGGCGGTGGGGCAGTTGGCTCCCCGGCGTTCCGATGA
GGCATCGGGGCGGAGCGCGTGCGCTTATTCGTATGATCAGCTGACGGCGC
AGGGGGAGATTGACATGATCACGGGGATGCGTCCGTCGTCTTTCCGCGCC
CAGCGGGAGAGCCTCCGCAGCCGCCGACCGCCCCCGCAGCTGCGGCCGGC
GTCGTCGTCTCCCGACCTGCTGGCCGTCTTCCGTAGCGCGGAAGGCGGCG
GCGATGGCGGCGGAAGTGGCGGCGGCAGTGCTGGCAGCGACGACGGAGGC
GGAGACAAAGATGGTTTGGGCAACGGGGCCAGCAGTGGCGGCAACAATGG
GGAGCCGGCACCAGGATGGCAGAGCGATTCTGTATTGCGGGGCGTGCCTC
CCGATAAGCACTCGGAGTGAGTTTGTGTGCCGCAGGTTTGCGCCGCGGCG
GGCTGTAAGCGCAGTCTTGCCACCGCGTGATTGACGAGCGGCGGGGATGG
TTGTTCCAAGTGAGACGAAGACCCAATTGTACACAGCGACATGCCGTTGT
CTCTAAAACAGACCTTTATCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1889:3961..6483-

>mRNA_P-wetherbeei_contig1889.2.1 ID=mRNA_P-wetherbeei_contig1889.2.1|Name=mRNA_P-wetherbeei_contig1889.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1698bp|location=Sequence derived from alignment at P-wetherbeei_contig1889:3961..6483- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAAACTGCGTTCGCACGGCCGTTCCAAGCCGGGCTGCTCTAGACA
CCGCCGTCCGTCTCCCCCTCATTGTATCTTTACTGGCACCGATTGGTGCT
GCTGCCCTTCTGGTACGACCGCCGCCTTCCTGCCCCCTGCTGCCCGTTTC
CTGCCGCCTGTTATCTTTCTTTATCTTAAGGGTGTCGGAGAGGGCGTGTG
GGTGGCGGTGCTCGTGAGCTATGGCCTCGGCGGCGCTCGCGACTCCAACG
GGACAACCCCTTCCGTCGCCATGATGGGACAGGCGGCCTTCACGATCATG
ACGCTGGCTGTGAACGCCAAGATGTTCTTTGTGCAGAAGCGGTGGCACAT
TGTCGAGGCGGCGGTGCTGCTGCTGTCGACGGGGTCGCTCTTCGCTGGGT
CGGCGCTGCTCGGTGTGCTGATGGAGCTCGACTGGGACTTCTACTGGACG
CCACAGTGCCTCATGCGGAGCGCCAACTATTGGTTGGTCGTTGTGCTTGG
CGTCACCGTCATCGTCATGCGCGACCTCGCCTGGAAGGCCGCCCACCGCT
GGTGGTCTCCCAAGCTGCATCACGTCCTGGCCGAGATGGAGGTCGGAGGC
CTTCAGGATGTCTGCCTGCCACCGGAGCTGCGGCGGACGCTCGTCGCGCA
CGACGCGATCGAGCGCGTCGTGTCGGCGGATGCGTCGGTGCGGATGGACG
GCGCGCACTCAGCGCGGTCAACGACGCTGTCGTCGCGGCTGGGCGGCTTC
GGCTTCGGCGGCGGCGGCGGTGTCGGCAGCGGCACGGGTATAGGCGGAGG
CGGCGGCTTTGGCGGCGGCGGCACGGGTACAGGCGGAGGCGGCGGCTTTA
GCGGCGGCGGCAATTTTGGGAGCAGTGGCGGCGGAGCCTTCGGAGCGGCC
GGGCTGGGCGCCACCGACCGCAGCGGCGGCAGCGGCGTCAGCGGCAGCAG
CGGCGGCGCCGCCAGCGGGGTCGGCAGCGGGCGGTGGGCGGTGGAGCTGC
CGGCGGTGTTGCCAGCGGCGCTCCCGCTGAAAGGGGGGCGGGCCTCGCTT
CCTGGGGGCGGCGGCGGCGGCGGCGGCCTGAATGGCATCGGACTGGCGCA
GGACGGGGTCGTGTGGTCCGCGGCCTCCACGCCGGGGCGTGGCCTCCCGG
CGACGTTGTTCGGCGGCGCCGCGGCGGGCACGGGGAAACCACCGCTGGCG
CTGCCGCGAGGGAGCTCCCCGCCGCCCTTGTCGCCCGGGGCCTTCGGCGG
CAACGGCGGCGGCGGCCCAATGCCGCTGTGGATGATGACAGCGGCGGTGG
GGCAGTTGGCTCCCCGGCGTTCCGATGAGGCATCGGGGCGGAGCGCGTGC
GCTTATTCGTATGATCAGCTGACGGCGCAGGGGGAGATTGACATGATCAC
GGGGATGCGTCCGTCGTCTTTCCGCGCCCAGCGGGAGAGCCTCCGCAGCC
GCCGACCGCCCCCGCAGCTGCGGCCGGCGTCGTCGTCTCCCGACCTGCTG
GCCGTCTTCCGTAGCGCGGAAGGCGGCGGCGATGGCGGCGGAAGTGGCGG
CGGCAGTGCTGGCAGCGACGACGGAGGCGGAGACAAAGATGGTTTGGGCA
ACGGGGCCAGCAGTGGCGGCAACAATGGGGAGCCGGCACCAGGATGGCAG
AGCGATTCTGTATTGCGGGGCGTGCCTCCCGATAAGCACTCGGAGTGA
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