mRNA_P-wetherbeei_contig18868.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18868.2.1
Unique NamemRNA_P-wetherbeei_contig18868.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig18868.2.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.870e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    4 SLLDPRNNAGMRDGFNAAEVRAAFLRWFVSTFRTYQTHV 120
            S+LDP N+    DGF+A+E+RAAFLR+FVS FR Y  HV
Sbjct:  653 SMLDPANHTNAPDGFSASEIRAAFLRFFVSIFRGYLAHV 691
[Close]
BLAST of mRNA_P-wetherbeei_contig18868.2.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.460e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 ISLLDPRNNAGMRD--GFNAAEVRAAFLRWFVSTFRTYQTHV 120
            +SL D RNN+   D  GFN  E+RAAFLR+FVS FRTYQ ++
Sbjct:  958 LSLTDARNNSDAADVLGFNVHEIRAAFLRFFVSIFRTYQDYL 999
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18868.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU92_ECTSI3.870e-761.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKZ6_9STRA3.460e-659.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18868contigP-wetherbeei_contig18868:1067..1186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU92
PFAMsArfGap,C1_2,C2,DENN,DUF3490,PH,RhoGEF,dDENN,uDENN
Model size120
Max annot lvl2759|Eukaryota
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
Exons1
Evalue6.34e-08
EggNOG OGsCOG5347@1|root,KOG2127@1|root,KOG0703@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size120
COG categoryL
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.2796948-CDS-P-wetherbeei_contig18868:1066..11861683186157.2796948-CDS-P-wetherbeei_contig18868:1066..1186Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18868 1067..1186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18868.2.1prot_P-wetherbeei_contig18868.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18868 1067..1186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18868.2.1

>prot_P-wetherbeei_contig18868.2.1 ID=prot_P-wetherbeei_contig18868.2.1|Name=mRNA_P-wetherbeei_contig18868.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
ISLLDPRNNAGMRDGFNAAEVRAAFLRWFVSTFRTYQTHV
back to top

mRNA from alignment at P-wetherbeei_contig18868:1067..1186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18868.2.1 ID=mRNA_P-wetherbeei_contig18868.2.1|Name=mRNA_P-wetherbeei_contig18868.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig18868:1067..1186- (Phaeothamnion wetherbeei SAG_119_79)
ATTTCCCTGCTGGATCCGCGGAACAACGCCGGCATGCGGGATGGCTTCAA
CGCGGCGGAGGTGAGGGCGGCGTTCCTGCGGTGGTTCGTGAGCACGTTCC
GGACATATCAGACGCACGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18868:1067..1186-

>mRNA_P-wetherbeei_contig18868.2.1 ID=mRNA_P-wetherbeei_contig18868.2.1|Name=mRNA_P-wetherbeei_contig18868.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig18868:1067..1186- (Phaeothamnion wetherbeei SAG_119_79)
ATTTCCCTGCTGGATCCGCGGAACAACGCCGGCATGCGGGATGGCTTCAA
CGCGGCGGAGGTGAGGGCGGCGTTCCTGCGGTGGTTCGTGAGCACGTTCC
GGACATATCAGACGCACGTC
back to top