mRNA_P-wetherbeei_contig18866.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18866.1.1
Unique NamemRNA_P-wetherbeei_contig18866.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: UPI001C7350E4 (MoaD/ThiS family protein n=1 Tax=Georgfuchsia toluolica TaxID=424218 RepID=UPI001C7350E4)

HSP 1 Score: 118 bits (295), Expect = 5.600e-33
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV IP  LRSYTG++R V A G TLG LL+DLDR++PGIRFRMIDEQDAIRRH+RI+VN D+A ALD  L  +D+V I QALSGG
Sbjct:    1 MKVSIPTPLRSYTGEQREVEADGNTLGELLIDLDRRYPGIRFRMIDEQDAIRRHIRIWVNQDQAAALDTPLRSSDEVIIFQALSGG 86          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A1F4DRS4_9PROT (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 TaxID=1797498 RepID=A0A1F4DRS4_9PROT)

HSP 1 Score: 117 bits (292), Expect = 1.610e-32
Identity = 59/86 (68.60%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV IP  LR YTG+   V A+G TL  LL DLDRQ+PGIRFRMIDEQD IRRHMR++VN DE R LD  L  TD+V IVQALSGG
Sbjct:    1 MKVLIPTPLRDYTGEHSEVEAEGGTLAELLADLDRQYPGIRFRMIDEQDEIRRHMRVWVNTDEVRTLDFPLRATDEVIIVQALSGG 86          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A7C2YEG8_9PROT (MoaD/ThiS family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YEG8_9PROT)

HSP 1 Score: 113 bits (283), Expect = 3.670e-31
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            M+V+IP ALRSYT +R    A GATL ALL DLDR++PGIRFRMIDEQD IRRH+RIFVNG++  AL   L D+D+V IVQALSGG
Sbjct:    1 MRVHIPSALRSYT-ERSETQASGATLAALLADLDRRYPGIRFRMIDEQDRIRRHIRIFVNGEQVHALAQPLRDSDEVVIVQALSGG 85          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A7V3F5Y9_9BACT (MoaD/ThiS family protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3F5Y9_9BACT)

HSP 1 Score: 112 bits (281), Expect = 7.620e-31
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            M+V++P  LRSYTG +  V A+GAT+G LL DLDR++PG+RFRMIDEQDAIR H+R+FVNG++   LD  L  +D+V I+QALSGG
Sbjct:    1 MRVFVPTPLRSYTGQQAEVEAEGATVGELLADLDRRYPGMRFRMIDEQDAIRPHVRLFVNGEQVWRLDTPLRSSDEVQILQALSGG 86          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A1F3YM00_9PROT (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Betaproteobacteria bacterium RBG_16_64_18 TaxID=1797477 RepID=A0A1F3YM00_9PROT)

HSP 1 Score: 111 bits (277), Expect = 3.100e-30
Identity = 56/86 (65.12%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV IP  LRSYTG+R  V A+G TL  LL DLDR++PGIRFRMIDEQDAIRRH+RI+VN D+   L + L   D+V I QALSGG
Sbjct:    1 MKVLIPTPLRSYTGERSEVEAEGTTLAELLADLDRRYPGIRFRMIDEQDAIRRHIRIWVNRDQVSTLQVQLGAEDEVIIFQALSGG 86          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A3N5X843_9PROT (MoaD/ThiS family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5X843_9PROT)

HSP 1 Score: 110 bits (276), Expect = 4.280e-30
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV IP ALRSYT +R +  AQGATL  LL DLDRQ+PGIRFRMIDEQ+ +RRH+RIF+NG +   L   L++ DDV IVQALSGG
Sbjct:    1 MKVQIPSALRSYT-ERGSAEAQGATLAELLADLDRQYPGIRFRMIDEQERVRRHIRIFINGQQVHELACALSNGDDVVIVQALSGG 85          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A537B1T4_9PROT (MoaD/ThiS family protein n=6 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537B1T4_9PROT)

HSP 1 Score: 110 bits (276), Expect = 4.410e-30
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            M V IP  LR YTG R  V A+GATL ALL DL+R+FPGIRFRMIDEQDAIRRH++IFVN  +AR L   LA  D+V IV ALSGG
Sbjct:    1 MNVLIPSQLRDYTGGRAHVEARGATLAALLADLERRFPGIRFRMIDEQDAIRRHIKIFVNQQQARDLGAALATNDEVVIVGALSGG 86          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A6M4H4I9_9PROT (Sulfur carrier protein CysO n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H4I9_9PROT)

HSP 1 Score: 109 bits (272), Expect = 1.790e-29
Identity = 57/86 (66.28%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV +P  L SYT  RR V A GATL  +L DLDRQFPGIRFRMIDEQDAIR+H+RIFVN + A  L   LA TD+V I+ ALSGG
Sbjct:    1 MKVVLPSPLVSYTAGRREVQAAGATLAEVLADLDRQFPGIRFRMIDEQDAIRQHIRIFVNREPAPGLAAALASTDEVLIIAALSGG 86          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A1F3ZX94_9PROT (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 TaxID=1797484 RepID=A0A1F3ZX94_9PROT)

HSP 1 Score: 107 bits (267), Expect = 1.010e-28
Identity = 58/86 (67.44%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV IP ALRSYT      AA GATLG +L+DLDR++ GIRFRM+DEQD IRRH+RIFVNG + R L   LA TD+V IVQALSGG
Sbjct:    1 MKVLIPGALRSYTESSEAEAA-GATLGEVLVDLDRRYTGIRFRMVDEQDRIRRHIRIFVNGGQVRELSQPLAITDEVVIVQALSGG 85          
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Match: A0A1F3ZUC1_9PROT (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F3ZUC1_9PROT)

HSP 1 Score: 107 bits (266), Expect = 1.430e-28
Identity = 58/86 (67.44%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDAIRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG 258
            MKV IP ALRSYT ++    A GATL A+L DL+RQ+PGIRFRMIDEQD IRRH+RIFVNG + R L   L  TD+V IVQALSGG
Sbjct:    1 MKVLIPGALRSYT-EKGEAEAGGATLAAVLADLERQYPGIRFRMIDEQDRIRRHIRIFVNGGQVRDLSQPLNATDEVVIVQALSGG 85          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18866.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C7350E45.600e-3369.77MoaD/ThiS family protein n=1 Tax=Georgfuchsia tolu... [more]
A0A1F4DRS4_9PROT1.610e-3268.60Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A7C2YEG8_9PROT3.670e-3168.60MoaD/ThiS family protein n=1 Tax=Betaproteobacteri... [more]
A0A7V3F5Y9_9BACT7.620e-3161.63MoaD/ThiS family protein n=1 Tax=bacterium TaxID=1... [more]
A0A1F3YM00_9PROT3.100e-3065.12Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A3N5X843_9PROT4.280e-3066.28MoaD/ThiS family protein n=1 Tax=Betaproteobacteri... [more]
A0A537B1T4_9PROT4.410e-3067.44MoaD/ThiS family protein n=6 Tax=Betaproteobacteri... [more]
A0A6M4H4I9_9PROT1.790e-2966.28Sulfur carrier protein CysO n=1 Tax=Usitatibacter ... [more]
A0A1F3ZX94_9PROT1.010e-2867.44Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A1F3ZUC1_9PROT1.430e-2867.44Molybdopterin synthase sulfur carrier subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18866contigP-wetherbeei_contig18866:540..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000014_gene241
Model size261
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03636
KEGG Pathwayko04122,map04122
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.19e-27
EggNOG OGsCOG1977@1|root,COG1977@2|Bacteria,1N9QE@1224|Proteobacteria,2UKCD@28211|Alphaproteobacteria
DescriptionThiS family
Cds size261
COG categoryH
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.205592-CDS-P-wetherbeei_contig18866:539..8001683186157.205592-CDS-P-wetherbeei_contig18866:539..800Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18866 540..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18866.1.1prot_P-wetherbeei_contig18866.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18866 540..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18866.1.1

>prot_P-wetherbeei_contig18866.1.1 ID=prot_P-wetherbeei_contig18866.1.1|Name=mRNA_P-wetherbeei_contig18866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MKVYIPDALRSYTGDRRTVAAQGATLGALLMDLDRQFPGIRFRMIDEQDA
IRRHMRIFVNGDEARALDITLADTDDVSIVQALSGG*
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mRNA from alignment at P-wetherbeei_contig18866:540..800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18866.1.1 ID=mRNA_P-wetherbeei_contig18866.1.1|Name=mRNA_P-wetherbeei_contig18866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig18866:540..800- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGTGTACATACCGGACGCGTTGCGCTCGTACACGGGCGACCGGCG CACGGTCGCCGCGCAGGGCGCGACGCTCGGCGCGCTCCTCATGGACCTCG ATCGACAGTTTCCGGGCATCCGCTTCCGCATGATCGACGAGCAGGATGCG ATTCGCCGCCACATGCGCATATTCGTCAACGGCGACGAAGCGCGCGCGCT CGATATCACGCTTGCCGACACCGACGACGTTTCGATCGTGCAGGCTTTGA GCGGCGGTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18866:540..800-

>mRNA_P-wetherbeei_contig18866.1.1 ID=mRNA_P-wetherbeei_contig18866.1.1|Name=mRNA_P-wetherbeei_contig18866.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig18866:540..800- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGTGTACATACCGGACGCGTTGCGCTCGTACACGGGCGACCGGCG
CACGGTCGCCGCGCAGGGCGCGACGCTCGGCGCGCTCCTCATGGACCTCG
ATCGACAGTTTCCGGGCATCCGCTTCCGCATGATCGACGAGCAGGATGCG
ATTCGCCGCCACATGCGCATATTCGTCAACGGCGACGAAGCGCGCGCGCT
CGATATCACGCTTGCCGACACCGACGACGTTTCGATCGTGCAGGCTTTGA
GCGGCGGTTAG
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