mRNA_P-wetherbeei_contig1886.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1886.3.1
Unique NamemRNA_P-wetherbeei_contig1886.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1886.3.1 vs. uniprot
Match: A0A835YKS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.740e-22
Identity = 90/233 (38.63%), Postives = 108/233 (46.35%), Query Frame = 1
Query:   70 FVPGVVTHLKNPVDLAKEGDIPCGIVLSTSATLARDERFDALTNVAGGRPDEHLGAKGGFTPGNPTFAGGPPRDWLSNITDHGVVLATSEKLHPAKEEP-ETNVAGGRPDERHGAKGGFTPGKPTLAGGPPRDIPVMDVTDHGIVLRTTTEL----SVDPNADDGTVNERGERVGRHGGFHHGVVEFGGGPLQMSPTTADAV----AGEPKGWRRGGGANFEAGVTVLMGGAP 741
            F  GV   +  P D A  G      VL TSATLA D R +       G  DE  G  G      P +   P  D ++   +HG VLAT   L P       TN+AGGRP ER G +GGFTPG    AGG  RD+P+     HG VL T+  L    S +P    GT  ER    GR G F HG        L+M P+ ADA     AG+ KG RR    ++ AG T+  G  P
Sbjct:   30 FAGGVPHDVPVPHDQANHGT-----VLYTSATLAPDMRGELRLKT--GAVDERQGVSGA----QPHWIR-PAHDAVAPELNHGTVLATFPHLQPNMAYSYRTNIAGGRPTERLGVRGGFTPGVVICAGGAARDVPIAAERHHGTVLYTSAALRPDASQEPRLKQGTCYER---QGRVGSFEHGDAH-----LRM-PSAADAALWKEAGQ-KGGRRFAEGHYLAGTTIFAGTVP 240          
BLAST of mRNA_P-wetherbeei_contig1886.3.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.080e-18
Identity = 66/157 (42.04%), Postives = 81/157 (51.59%), Query Frame = 1
Query:    1 PDMSGEQQMNDSRPTERFSQHGGFVPGVVTHLKN-PVDLAKEGDIPCGIVLSTSATLARDERFDALTNVAGGRPDEHLGAKGGFTPGNPTFAGGPPRDW-LSNITDHGVVL--ATSEKLHPAKE-EPETNVAGGRPDERHGAKGGFTPGKPTLAGGP 456
            PD+S E + N  RPTER    G F PG    +   P D+  E ++  G VL  SA    D   +A TN    RP E LG++G FT G   + GG PRD  L  + D G VL  + SE+  P+     ETNV+GGR DERHG  G F  G     GGP
Sbjct:   67 PDLSAEARTNAVRPTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAI--RPKERLGSRGRFTAGVRGWVGGKPRDVPLPRLRDPGTVLFESASERSRPSMSFSGETNVSGGREDERHGRLGSFEHGVVEARGGP 221          
BLAST of mRNA_P-wetherbeei_contig1886.3.1 vs. uniprot
Match: A0A836CJG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.660e-18
Identity = 94/260 (36.15%), Postives = 109/260 (41.92%), Query Frame = 1
Query:   58 QHGG--FVPGVVTHLKNPVDLAKEGDIPCGIVLSTSATLARDERFDALTNVAGGRPDEHLGAKGG----FTPGNPTFAGGPPRDWLSNITDHGVVLATSEKLHPAKEEPETNVAGGRPDERHGAKGGFTPGKPTLAGGPPR-DIPVM------------DVTDHGIVL----RTTTELSVDPNADDGTVNERGERVGRHGGFHHGVVEFGGGPLQMSPTTADAV------AGEPKG-WRRGGGANFEAGVTVLMGGAPKY 747
            QHG   F  G    ++ P D      +  G VL TS TL  D     LT    G P E +G  G         +                D G VL     L PA  +   NV GGRP ER GA+G FTPG   LAGGP R  +P++            DV D G VL    R T +LS       GT  E  ER GR G F  G        L+M P+ ADA        G  KG  RR G A++ AG TVL GGAP Y
Sbjct:   40 QHGVTVFAGGAPHDMRPPFDTV----VNSGTVLFTSETLRPDLSSVPLTKP--GWPGERVGRSGSQPHRHARSHSADXXXXXXXXXXXAPDRGTVLGEWPHLQPAAADAGMNVVGGRPTERRGARGSFTPGSRILAGGPARASLPLLPPPEGDXXXXXXDVPDRGRVLSSCERLTPDLSGAARCKPGTRGE--ERWGRVGSFEGGATR-----LRM-PSAADAARWREDDGGAHKGVGRRFGPAHYLAGTTVLSGGAPTY 285          
BLAST of mRNA_P-wetherbeei_contig1886.3.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.900e-17
Identity = 66/159 (41.51%), Postives = 81/159 (50.94%), Query Frame = 1
Query:    1 PDMSGEQQMN--DSRPTERFSQHGGFVPGV-VTHLKNPVDLAKEGDIPCGIVLSTSATLARDERFDALTNVAGGRPDEHLGAKGGFTPGNPTFAGGPPRDW-LSNITDHGVVL--ATSEKLHPAKE-EPETNVAGGRPDERHGAKGGFTPGKPTLAGGP 456
            PD+SG    N    RP ERF   G F  GV +    +  D+  E ++  G VL  SA    D   +A TN    RP E LG++G FT G   +AGG PRD  L  + D G VL  + SE+  P+     ETNV+GGR DERHG  G F  G     GGP
Sbjct:    7 PDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAV--RPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSLSFSRETNVSGGRQDERHGRLGSFEHGVVEARGGP 163          
BLAST of mRNA_P-wetherbeei_contig1886.3.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.230e-16
Identity = 64/157 (40.76%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    1 PDMSGEQQMNDSRPTERFSQHGGFVPGVVTHLKN-PVDLAKEGDIPCGIVLSTSATLARDERFDALTNVAGGRPDEHLGAKGGFTPGNPTFAGGPPRDW-LSNITDHGVVL--ATSEKLHPAKE-EPETNVAGGRPDERHGAKGGFTPGKPTLAGGP 456
            PD+S E + N  RP ER    G F PG        P D+  E ++  G VL  SA    D   +A  N    RP E LG++G FT G   + GG PRD  L  + D G VL  + SE+  P+     ETNV+GGR DERHG  G F  G     GGP
Sbjct:  356 PDLSTEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLLVSAVHKPDLSAEARINAT--RPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSLSFSGETNVSGGREDERHGRLGSFEHGVVEARGGP 510          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1886.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YKS3_9STRA9.740e-2238.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G1I1_ECTSI1.080e-1842.04Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A836CJG1_9STRA5.660e-1836.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KBU2_9PHAE1.900e-1741.51Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
D7FZE3_ECTSI7.230e-1640.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1886contigP-wetherbeei_contig1886:3334..4092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons1
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.0904288-CDS-P-wetherbeei_contig1886:3333..40861683186157.0904288-CDS-P-wetherbeei_contig1886:3333..4086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1886 3334..4086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186157.1002765-UTR-P-wetherbeei_contig1886:4086..40921683186157.1002765-UTR-P-wetherbeei_contig1886:4086..4092Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1886 4087..4092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1886.3.1prot_P-wetherbeei_contig1886.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1886 3334..4086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1886.3.1

>prot_P-wetherbeei_contig1886.3.1 ID=prot_P-wetherbeei_contig1886.3.1|Name=mRNA_P-wetherbeei_contig1886.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
MSGEQQMNDSRPTERFSQHGGFVPGVVTHLKNPVDLAKEGDIPCGIVLST
SATLARDERFDALTNVAGGRPDEHLGAKGGFTPGNPTFAGGPPRDWLSNI
TDHGVVLATSEKLHPAKEEPETNVAGGRPDERHGAKGGFTPGKPTLAGGP
PRDIPVMDVTDHGIVLRTTTELSVDPNADDGTVNERGERVGRHGGFHHGV
VEFGGGPLQMSPTTADAVAGEPKGWRRGGGANFEAGVTVLMGGAPKYDQH
*
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mRNA from alignment at P-wetherbeei_contig1886:3334..4092-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1886.3.1 ID=mRNA_P-wetherbeei_contig1886.3.1|Name=mRNA_P-wetherbeei_contig1886.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig1886:3334..4092- (Phaeothamnion wetherbeei SAG_119_79)
CCTGACATGAGCGGAGAGCAGCAAATGAACGACAGTAGGCCAACTGAACG CTTCAGCCAGCACGGTGGCTTTGTGCCCGGCGTGGTGACCCATCTCAAGA ACCCCGTCGACCTTGCGAAGGAGGGCGACATCCCGTGCGGCATCGTGCTT TCGACGTCGGCAACCCTCGCGCGGGACGAGCGCTTCGATGCCCTGACCAA CGTTGCCGGGGGCCGCCCTGACGAGCACCTCGGTGCCAAGGGCGGCTTTA CACCCGGCAATCCAACTTTCGCCGGTGGCCCACCTCGAGACTGGCTCTCC AACATCACGGACCACGGCGTCGTCTTGGCAACCAGCGAGAAGCTCCACCC CGCCAAGGAGGAACCCGAGACAAACGTGGCCGGCGGCCGTCCTGACGAGC GCCACGGTGCAAAGGGCGGCTTCACGCCCGGCAAGCCGACGCTCGCCGGC GGCCCTCCGCGTGATATTCCCGTCATGGACGTTACGGACCACGGCATCGT CCTCAGGACGACGACTGAGCTCTCCGTGGACCCCAACGCCGACGATGGCA CGGTCAACGAGCGCGGCGAGCGCGTCGGACGGCACGGCGGCTTCCATCAC GGCGTCGTCGAATTCGGCGGTGGCCCGCTGCAGATGTCGCCGACGACGGC GGACGCGGTGGCGGGCGAGCCGAAAGGCTGGCGGCGCGGCGGCGGCGCGA ACTTCGAGGCCGGTGTGACCGTCCTGATGGGGGGCGCGCCGAAATACGAC CAGCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1886:3334..4092-

>mRNA_P-wetherbeei_contig1886.3.1 ID=mRNA_P-wetherbeei_contig1886.3.1|Name=mRNA_P-wetherbeei_contig1886.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig1886:3334..4092- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGAGAGCAGCAAATGAACGACAGTAGGCCAACTGAACGCTTCAG
CCAGCACGGTGGCTTTGTGCCCGGCGTGGTGACCCATCTCAAGAACCCCG
TCGACCTTGCGAAGGAGGGCGACATCCCGTGCGGCATCGTGCTTTCGACG
TCGGCAACCCTCGCGCGGGACGAGCGCTTCGATGCCCTGACCAACGTTGC
CGGGGGCCGCCCTGACGAGCACCTCGGTGCCAAGGGCGGCTTTACACCCG
GCAATCCAACTTTCGCCGGTGGCCCACCTCGAGACTGGCTCTCCAACATC
ACGGACCACGGCGTCGTCTTGGCAACCAGCGAGAAGCTCCACCCCGCCAA
GGAGGAACCCGAGACAAACGTGGCCGGCGGCCGTCCTGACGAGCGCCACG
GTGCAAAGGGCGGCTTCACGCCCGGCAAGCCGACGCTCGCCGGCGGCCCT
CCGCGTGATATTCCCGTCATGGACGTTACGGACCACGGCATCGTCCTCAG
GACGACGACTGAGCTCTCCGTGGACCCCAACGCCGACGATGGCACGGTCA
ACGAGCGCGGCGAGCGCGTCGGACGGCACGGCGGCTTCCATCACGGCGTC
GTCGAATTCGGCGGTGGCCCGCTGCAGATGTCGCCGACGACGGCGGACGC
GGTGGCGGGCGAGCCGAAAGGCTGGCGGCGCGGCGGCGGCGCGAACTTCG
AGGCCGGTGTGACCGTCCTGATGGGGGGCGCGCCGAAATACGACCAGCAT
TAA
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