mRNA_P-wetherbeei_contig18850.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18850.2.1
Unique NamemRNA_P-wetherbeei_contig18850.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A6H5JW07_9PHAE (UTP15_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JW07_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 1.940e-104
Identity = 159/259 (61.39%), Postives = 191/259 (73.75%), Query Frame = 1
Query:   10 YKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAALTLQHDAPVEALLFLPGGTLLLGAGGNELR--VWDLLAGG--RLLHTVCNHQKTVTCLALD 774
            YKRL +K++PR+QERET EARYWR FT P V  H APV+CI FS  APHDFAVTCSTHV++H    G+++RS+GRF  VA  A+ R DGKL+ TGD TG V  I+ ++K +LR F EH A    V W+CD L++ S SDD T+RLWDLPT+ A+  R+GHADYVRALA S S+ + W SGSYD T ++WD RQP    L L H APVEA LFLPGG L + AGGNE++  VWDLL GG  RLLHT+ NHQKTVTCLALD
Sbjct:    5 YKRLTIKRFPRVQERETAEARYWRNFTNPEVQTHNAPVSCIHFSATAPHDFAVTCSTHVSLHAAVTGRQIRSVGRFDHVAYSAQLRSDGKLMGTGDHTGTV--IDVKTKGILRAFREHKAPTRVVRWSCDGLQLASGSDDKTLRLWDLPTSTAVQVRQGHADYVRALAASPSSPDTWISGSYDHTVKMWDTRQPKRNVLELSHGAPVEACLFLPGGGLCVSAGGNEVKASVWDLLGGGGGRLLHTLANHQKTVTCLALD 261          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A835Z7W5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W5_9STRA)

HSP 1 Score: 293 bits (750), Expect = 1.960e-93
Identity = 137/256 (53.52%), Postives = 187/256 (73.05%), Query Frame = 1
Query:    7 DYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            ++KRL +KQ+P++QE++TPEA+YWR+F+ PVV  H A  T + +SP AP+D AV+C +HV+I  G  G ++R+I RF  VA    +RGDG+L+A GD  G+V   +A SK +LRTF+ H AAV AV W+ D LR+ SASDD +VRLWDLPT   +G R GH DYVRA+  SA++A+ W +G YD T RLWD R  GA  + ++H APVEA+L LPGG+L+  AGGN L++WD + GG+L+H   +HQKT+TCLAL+
Sbjct:    4 EFKRLALKQFPQIQEKDTPEAKYWRKFSGPVVETHDAHCTSLHYSPAAPYDLAVSCGSHVSIRSGATGAKLRAISRFQGVAYSGVFRGDGRLIAGGDAKGSVIVADATSKAMLRTFAGHAAAVRAVRWSADGLRLASASDDKSVRLWDLPTGAHVGMREGHTDYVRAMDASAASADAWVTGGYDGTVRLWDARAAGAVRV-MEHGAPVEAVLCLPGGSLVASAGGNVLKIWDAMGGGKLVHECSHHQKTITCLALN 258          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A1X2H797_SYNRA (WD40-repeat-containing domain protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H797_SYNRA)

HSP 1 Score: 246 bits (629), Expect = 2.880e-75
Identity = 120/256 (46.88%), Postives = 167/256 (65.23%), Query Frame = 1
Query:    7 DYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            DY+RL +KQ  RL  RETPE +YW++F  P++      V+ + FSPVAP+DFA+  ST V I+  +  +  ++I RF D+A  A +R DGKL+  GD+TG V+  +  S+ +LRTF EHT  V    ++ +N ++ +ASDD TVRLWD+P   +I     H DYVRA   S  N  +  +GSYD+T ++WD RQ G   +T+QHDAPVE++L  PGG  ++ AGG  ++VWDLL+GGR +H V N QKTVT L  D
Sbjct:    2 DYRRLAVKQQARLPSRETPEGKYWKKFKSPILIKEYGAVSSVYFSPVAPYDFAIASSTRVQIYSSKTHQPKKTISRFKDIAYSASFRQDGKLVVAGDETGLVQVFDVNSRAILRTFREHTLPVRVTKFSSENTQIMTASDDRTVRLWDIPAEKSIHVFEDHQDYVRAGVVSQDNPHMLVTGSYDQTIKIWDTRQNGCV-MTMQHDAPVESVLMYPGGGAVVSAGGPGIKVWDLLSGGRCMHAVSNQQKTVTSLCFD 256          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A0D2UI43_CAPO3 (U3 small nucleolar RNA-associated protein 15 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UI43_CAPO3)

HSP 1 Score: 246 bits (627), Expect = 6.620e-75
Identity = 121/249 (48.59%), Postives = 163/249 (65.46%), Query Frame = 1
Query:   28 KQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            KQYPRL  RET E+RYW+RF  PVV    + V+ I FSP AP DFAVT ST + I+  +     +++ RF DVA C  +R DGKLL  GD++G V+ ++  S++VLRTF+ H  AVH   +A D+ ++ SA DDA VR WD+P    +    GH DY+RA   S   +++W +G YD   +LWD R  G+  +++ H APVE +LF PGG L L AG N+++VWD+LAGGRLL T  NHQKT+T + LD
Sbjct:   40 KQYPRLARRETSESRYWKRFKFPVVVKEYSAVSHIHFSPTAPWDFAVTSSTRIQIYSKKSNTVKKTLSRFKDVAYCGTFRRDGKLLVAGDESGLVQLLDPNSRSVLRTFAGHQRAVHVTRFATDDNQIMSAGDDAVVRCWDIPAERQVLALTGHTDYIRAGVVSPVASDVWLTGGYDHMVKLWDTRA-GSCTMSMNHGAPVEQILFFPGGGLALSAGSNQIKVWDVLAGGRLLQTFSNHQKTITSMCLD 287          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A1V9YVE1_9STRA (U3 small nucleolar RNA-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVE1_9STRA)

HSP 1 Score: 245 bits (625), Expect = 7.860e-75
Identity = 120/260 (46.15%), Postives = 167/260 (64.23%), Query Frame = 1
Query:    7 DYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAA----LTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            D+ +L +KQ+P+  +   PE  YW +   P      A VTCID +PVAP+DFA   ST V ++        ++  RF DV   A +RGDGKLL TG+  G V  ++  S+TVLR    H  AV A  ++ D++ + SASDD T RLWDL T   +    GH DYVRA+A   +++ +WA+GSYD T +LWD+R  G+A+    +++ H APVEA+L LPGG L + AGG +++VWDLL+GG+LLH+  +HQKTVTCL+LD
Sbjct:    2 DFHKLSLKQFPQATKHVAPEKSYWLKLRAPHELPQVAAVTCIDANPVAPYDFAAATSTRVQLYSTTSNDIKKTFSRFHDVVYSAAFRGDGKLLVTGNANGQVAVLDVASRTVLRNLHGHKGAVRAAKFSNDHVHIFSASDDKTCRLWDLATGSPVAVMGGHTDYVRAVAAHPASSSMWATGSYDHTVKLWDMRNAGSASTKATMSMDHGAPVEAVLMLPGGNLAISAGGTDIKVWDLLSGGKLLHSFSSHQKTVTCLSLD 261          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A1X2II15_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2II15_9FUNG)

HSP 1 Score: 244 bits (622), Expect = 8.000e-74
Identity = 119/256 (46.48%), Postives = 170/256 (66.41%), Query Frame = 1
Query:    7 DYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            DY+++ +K+YP++  +++ E +YW+RF  P++    A +  I FSPVAPHDFA+  ST V I+  +  +  ++I RF D+A  A +R DGKLL  GD TG V+  +  S+ +LRTF EH+  VH   ++ +   + SASDD TVR+WD+PT  ++    GH DYVR+   S  N  L  +G+YD+T +LWD+RQ     +T+QH APVE+LL  PGG  ++ AGG  L+VWDLL+GGR LHT+ NHQKTVT LA +
Sbjct:    2 DYQKIVVKKYPKVPSKQSGEGKYWKRFKSPILIKEYASIPSIYFSPVAPHDFALASSTRVQIYSSKTHQPKKTISRFKDLAYSACFRHDGKLLVAGDATGLVQLFDVNSRAILRTFREHSMPVHVTKFSNNKTNIMSASDDKTVRIWDIPTETSVNVFEGHDDYVRSGVVSDDNPNLVLTGAYDQTVKLWDMRQ-NECVMTIQHGAPVESLLMYPGGGAIVSAGGPTLKVWDLLSGGRCLHTLSNHQKTVTSLAFN 256          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A067CFM1_SAPPC (UTP15_C domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CFM1_SAPPC)

HSP 1 Score: 239 bits (609), Expect = 1.960e-72
Identity = 119/257 (46.30%), Postives = 159/257 (61.87%), Query Frame = 1
Query:    7 DYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGA-AALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            ++K+L +K +P   ++ +PE  YW +   P      A VTCID SPVAP DFA   ST V ++        ++  RF DV   A +RGDGKLL TG+    V  ++  S+TVLR  + H  AV A  ++ DN+ + SASDD T RLWDL T   +     H DYVR  AP  +++ +WAS SYD T +LWD R   A + L++ H +PVEA + LPGG LL+ AG NE++VWDLL GG+LLH+   HQKT+TCLALD
Sbjct:    2 EFKKLPLKHFPTATKQSSPEKTYWTKLRAPTELPQVAAVTCIDASPVAPFDFAAATSTRVQLYSTSNNDVKKTFSRFHDVVYSAAFRGDGKLLVTGNANSQVAVLDVGSRTVLRNLNGHKGAVRAAKFSNDNVHIFSASDDKTCRLWDLATGSPVAVYGEHTDYVRVCAPHPTSSNVWASASYDHTVKLWDTRSATAKSTLSMDHGSPVEACVMLPGGNLLISAGSNEIKVWDLLTGGKLLHSFSAHQKTITCLALD 258          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A484EDC8_BRELC (UTP15_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDC8_BRELC)

HSP 1 Score: 236 bits (602), Expect = 2.320e-71
Identity = 113/261 (43.30%), Postives = 166/261 (63.60%), Query Frame = 1
Query:    4 GDYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQP----GAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            GDYKRL +K++P   E +T E  YW++F  P       PVT ID SPV PH  A+T ST + ++     + +++  RF DV     +R DGKLL  G +   V+ ++ +++ +LR+F  HTAA  +  ++ DN+ + S SDD T R WDLPT   +     H+DYVR+   + S+  +WA+GSYD T +LWD+R        ++++L H APVEA + +PGG+LLL AGGN ++VWD+L+GGR+LH+  +HQKT+TCL LD
Sbjct:    5 GDYKRLVLKKFPATIEVDTCEDSYWKKFYAPQELQQVGPVTHIDVSPVTPHHVAITSSTRIHLYSTTTNEIIKTFSRFRDVVYSGTFRSDGKLLVAGGEASHVQVLDIKTRAILRSFKGHTAATRSTRFSSDNVHVLSCSDDKTARYWDLPTGKPLALLGEHSDYVRSSGANPSSHNIWATGSYDHTVKLWDLRTSDQTVSKSSMSLNHGAPVEACMIMPGGSLLLSAGGNSIKVWDILSGGRILHSFSSHQKTITCLGLD 265          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: A0A5D6XGD7_9STRA (UTP15_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGD7_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.480e-70
Identity = 116/260 (44.62%), Postives = 162/260 (62.31%), Query Frame = 1
Query:    7 DYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQP----GAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            ++KRL +KQ+P   E ET E  YW++F  P       PVT ID SPVAPH  A+T ST + ++     +  ++  RF DV     +R DG+LL  G +   V+ ++  ++ +LRTF  HTAAV +  ++ DN+ + S SDD T R WDLPT   +     H DYVR+ A S S+  +WA+GSYD T +LWD+R       A+ ++L H APVEA L +PGG LL+ AGGN ++VWD+L+GGRLLH   +HQKT+T + LD
Sbjct:    6 EFKRLVLKQFPPTTEVETAENAYWKKFQAPQELQQLGPVTHIDVSPVAPHAVAITTSTRIHLYSTATNEVTKTFSRFRDVVYSGTFRSDGRLLVAGGEAPVVQVLDIGTRAILRTFKGHTAAVRSTRFSSDNVHVLSCSDDKTARYWDLPTGKPVALLGAHKDYVRSSAASPSSQHIWATGSYDHTVKLWDLRAADQSVAASTMSLNHGAPVEATLIMPGGGLLMSAGGNVVKVWDILSGGRLLHAFSSHQKTITSIGLD 265          
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Match: B3S863_TRIAD (U3 small nucleolar RNA-associated protein 15 homolog n=2 Tax=Trichoplax TaxID=10227 RepID=B3S863_TRIAD)

HSP 1 Score: 234 bits (596), Expect = 1.610e-70
Identity = 113/258 (43.80%), Postives = 161/258 (62.40%), Query Frame = 1
Query:    1 MGDYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVAPHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDKTGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWDLPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAAALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQKTVTCLALD 774
            M D+KR+ +K++ +    E+ E+ YW  +  P+V    + ++CIDFSPV PH +AVTCS  V ++D    +  ++I RF D A C  +R DGKL+  G   G V+  +  S+TVLR    H  A H   +A +NL + SASDD  VR WDLPT   +     H DY+RA   S  ++++W +GSYD T +LWD R+   +++T+ H APVEA+L  P G++ + AG N ++VWDL+ GGRLL  V NHQKT+TCL LD
Sbjct:    1 MADFKRIPIKKFSKANVEESSESSYWMGYKFPIVAKEHSAISCIDFSPVLPHHYAVTCSAKVQLYDCASNQVYKAISRFHDSALCGTFRYDGKLITAGSGDGLVQVFDTHSRTVLRQLHGHKRAAHVARFAMNNLHIISASDDKLVRCWDLPTGKEVAIFDEHTDYIRAGDVSRVSSDVWVTGSYDHTLKLWD-RRTDKSSMTIDHGAPVEAVLIYPSGSICISAGSNYIKVWDLIGGGRLLMGVTNHQKTITCLCLD 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18850.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW07_9PHAE1.940e-10461.39UTP15_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z7W5_9STRA1.960e-9353.52WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A1X2H797_SYNRA2.880e-7546.88WD40-repeat-containing domain protein n=1 Tax=Sync... [more]
A0A0D2UI43_CAPO36.620e-7548.59U3 small nucleolar RNA-associated protein 15 n=1 T... [more]
A0A1V9YVE1_9STRA7.860e-7546.15U3 small nucleolar RNA-associated protein n=1 Tax=... [more]
A0A1X2II15_9FUNG8.000e-7446.48WD40-repeat-containing domain protein n=1 Tax=Absi... [more]
A0A067CFM1_SAPPC1.960e-7246.30UTP15_C domain-containing protein n=2 Tax=Saproleg... [more]
A0A484EDC8_BRELC2.320e-7143.30UTP15_C domain-containing protein n=1 Tax=Bremia l... [more]
A0A5D6XGD7_9STRA1.480e-7044.62UTP15_C domain-containing protein n=1 Tax=Pythium ... [more]
B3S863_TRIAD1.610e-7043.80U3 small nucleolar RNA-associated protein 15 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18850contigP-wetherbeei_contig18850:545..1318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog192875.XP_004347059.1
Preferred nameUTP15
PFAMsUTP15_C,WD40
Model size774
Max annot lvl33154|Opisthokonta
KEGG koko:K14549
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005783,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022603,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045765,GO:0045766,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901342,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1904018,GO:1990904,GO:2000026,GO:2000112,GO:2000232,GO:2000234,GO:2001141
Exons1
Evalue4.95e-74
EggNOG OGsKOG0310@1|root,KOG0310@2759|Eukaryota,3926I@33154|Opisthokonta
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-17_002790.1
Descriptionpositive regulation of rRNA processing
Cds size774
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.9026604-CDS-P-wetherbeei_contig18850:544..13181683186156.9026604-CDS-P-wetherbeei_contig18850:544..1318Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18850 545..1318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18850.2.1prot_P-wetherbeei_contig18850.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18850 545..1318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18850.2.1

>prot_P-wetherbeei_contig18850.2.1 ID=prot_P-wetherbeei_contig18850.2.1|Name=mRNA_P-wetherbeei_contig18850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=258bp
MGDYKRLGMKQYPRLQERETPEARYWRRFTKPVVTVHPAPVTCIDFSPVA
PHDFAVTCSTHVAIHDGREGKEVRSIGRFGDVACCARYRGDGKLLATGDK
TGAVKAIEAQSKTVLRTFSEHTAAVHAVGWACDNLRMGSASDDATVRLWD
LPTAMAIGTRRGHADYVRALAPSASNAELWASGSYDRTARLWDVRQPGAA
ALTLQHDAPVEALLFLPGGTLLLGAGGNELRVWDLLAGGRLLHTVCNHQK
TVTCLALD
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mRNA from alignment at P-wetherbeei_contig18850:545..1318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18850.2.1 ID=mRNA_P-wetherbeei_contig18850.2.1|Name=mRNA_P-wetherbeei_contig18850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig18850:545..1318+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGACTACAAGAGACTGGGAATGAAGCAATACCCGCGGCTCCAGGA GCGGGAGACGCCCGAGGCTCGCTACTGGAGGCGCTTCACCAAGCCCGTGG TGACCGTGCACCCTGCACCCGTGACCTGCATCGACTTTAGTCCTGTGGCG CCACACGACTTTGCGGTCACGTGCTCCACCCACGTCGCGATTCACGACGG GCGGGAGGGTAAGGAGGTGCGCAGCATCGGTCGCTTTGGCGATGTGGCCT GCTGCGCCCGGTACCGCGGGGACGGGAAGCTGCTCGCGACGGGGGACAAG ACGGGCGCCGTCAAGGCCATCGAGGCGCAGAGTAAGACCGTCCTGCGCAC CTTCTCGGAGCACACTGCGGCCGTGCATGCGGTCGGCTGGGCCTGTGACA ACCTGCGGATGGGGTCGGCCTCCGACGACGCCACGGTCCGCCTCTGGGAC CTCCCGACAGCGATGGCGATCGGGACGCGCCGCGGCCATGCTGACTACGT CCGGGCGCTCGCTCCGAGCGCGTCCAATGCCGAACTGTGGGCGTCCGGCT CCTACGACCGCACCGCCCGGCTCTGGGACGTGCGGCAGCCCGGCGCAGCG GCCCTGACGCTGCAGCACGACGCGCCCGTCGAGGCCTTGCTCTTCCTGCC CGGCGGCACGCTGCTGCTAGGCGCCGGCGGCAACGAGCTGCGCGTCTGGG ATCTGTTGGCGGGCGGCCGCCTGTTGCACACTGTGTGCAACCACCAGAAG ACGGTCACGTGCCTCGCGCTCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18850:545..1318+

>mRNA_P-wetherbeei_contig18850.2.1 ID=mRNA_P-wetherbeei_contig18850.2.1|Name=mRNA_P-wetherbeei_contig18850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=774bp|location=Sequence derived from alignment at P-wetherbeei_contig18850:545..1318+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGACTACAAGAGACTGGGAATGAAGCAATACCCGCGGCTCCAGGA
GCGGGAGACGCCCGAGGCTCGCTACTGGAGGCGCTTCACCAAGCCCGTGG
TGACCGTGCACCCTGCACCCGTGACCTGCATCGACTTTAGTCCTGTGGCG
CCACACGACTTTGCGGTCACGTGCTCCACCCACGTCGCGATTCACGACGG
GCGGGAGGGTAAGGAGGTGCGCAGCATCGGTCGCTTTGGCGATGTGGCCT
GCTGCGCCCGGTACCGCGGGGACGGGAAGCTGCTCGCGACGGGGGACAAG
ACGGGCGCCGTCAAGGCCATCGAGGCGCAGAGTAAGACCGTCCTGCGCAC
CTTCTCGGAGCACACTGCGGCCGTGCATGCGGTCGGCTGGGCCTGTGACA
ACCTGCGGATGGGGTCGGCCTCCGACGACGCCACGGTCCGCCTCTGGGAC
CTCCCGACAGCGATGGCGATCGGGACGCGCCGCGGCCATGCTGACTACGT
CCGGGCGCTCGCTCCGAGCGCGTCCAATGCCGAACTGTGGGCGTCCGGCT
CCTACGACCGCACCGCCCGGCTCTGGGACGTGCGGCAGCCCGGCGCAGCG
GCCCTGACGCTGCAGCACGACGCGCCCGTCGAGGCCTTGCTCTTCCTGCC
CGGCGGCACGCTGCTGCTAGGCGCCGGCGGCAACGAGCTGCGCGTCTGGG
ATCTGTTGGCGGGCGGCCGCCTGTTGCACACTGTGTGCAACCACCAGAAG
ACGGTCACGTGCCTCGCGCTCGAC
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