mRNA_P-wetherbeei_contig18848.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18848.1.1
Unique NamemRNA_P-wetherbeei_contig18848.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18848.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18848contigP-wetherbeei_contig18848:74..1213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1343158.SACS_0603
PFAMsMMPL
Model size1140
Max annot lvl204441|Rhodospirillales
KEGG koko:K07003
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000443
EggNOG OGsCOG4258@1|root,COG4258@2|Bacteria,1QWAM@1224|Proteobacteria,2U2AR@28211|Alphaproteobacteria,2JYTW@204441|Rhodospirillales
DescriptionMMPL family
Cds size1131
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.793284-UTR-P-wetherbeei_contig18848:73..821683186156.793284-UTR-P-wetherbeei_contig18848:73..82Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18848 74..82 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.8021429-CDS-P-wetherbeei_contig18848:82..12131683186156.8021429-CDS-P-wetherbeei_contig18848:82..1213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18848 83..1213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18848.1.1prot_P-wetherbeei_contig18848.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18848 83..1213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18848.1.1

>prot_P-wetherbeei_contig18848.1.1 ID=prot_P-wetherbeei_contig18848.1.1|Name=mRNA_P-wetherbeei_contig18848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=377bp
MAASLFCIVFFSSLNFGASHLPGSDGEASSASRGLQFTVEGEAAAAKLVA
DLQQIQEVGTVRWMGTFLPQQVEQKRKILQDLAGTIPGVSDGGAVGPYDL
LENLRGIETGLRVISDGAGTDDGLRASAHELRRSLAVLASTSKTPESTAA
ELERFLFSGFGELTKTADALSRLTAPKLPDLDQNLRALYVANGDRWRVEA
LPKRLISAAAFIDATKGVDAIPLGPLMTEQAELRSLASASKSALTFGFIF
TLLITLAYLRSIVDWLIVVASSFLLLPLYAAFIVTTATAISPATLPALIM
TSLFGVTTALLLVTRKRQSQIAELTILLPMAVIIAIVLPIRLLHLQEFES
FTGTLIMLMAVATVFNLTVVPQICTWT
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mRNA from alignment at P-wetherbeei_contig18848:74..1213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18848.1.1 ID=mRNA_P-wetherbeei_contig18848.1.1|Name=mRNA_P-wetherbeei_contig18848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1140bp|location=Sequence derived from alignment at P-wetherbeei_contig18848:74..1213+ (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGCTGATGGCGGCTTCTCTCTTCTGCATCGTGTTTTTTTCATCCCT
GAATTTCGGTGCGTCGCATCTTCCCGGTTCGGATGGTGAAGCCTCCAGCG
CCTCAAGGGGGCTGCAATTCACTGTTGAAGGCGAGGCCGCCGCTGCAAAG
CTGGTGGCGGACCTCCAGCAAATCCAGGAGGTGGGAACGGTCCGCTGGAT
GGGAACATTCCTGCCCCAGCAGGTCGAGCAGAAACGCAAAATTCTGCAGG
ACCTCGCCGGGACAATACCGGGTGTGAGTGACGGCGGTGCCGTCGGCCCC
TACGACCTGCTCGAGAATCTGCGTGGAATTGAAACGGGTTTGCGCGTTAT
TTCCGATGGCGCTGGAACCGACGATGGCCTGCGCGCCAGCGCCCATGAAC
TTCGCCGCTCCCTCGCTGTGCTGGCCAGCACCAGCAAGACACCTGAATCG
ACCGCCGCGGAACTCGAGCGGTTTTTGTTTTCGGGCTTTGGCGAACTGAC
GAAAACCGCCGATGCACTGTCGCGCCTGACGGCCCCCAAACTCCCCGATC
TTGATCAAAACCTGCGCGCCCTTTACGTGGCGAATGGCGACAGGTGGCGG
GTCGAGGCCTTGCCCAAACGCCTGATATCGGCTGCCGCCTTTATCGACGC
AACGAAGGGAGTAGATGCCATACCCCTCGGCCCTCTGATGACCGAGCAGG
CGGAACTGCGTTCCCTCGCATCAGCCTCCAAATCAGCCCTGACATTTGGA
TTTATATTTACGCTGCTCATCACGCTCGCCTATCTCCGCAGCATTGTGGA
TTGGCTGATTGTCGTAGCATCCTCATTCCTGCTCTTGCCGCTTTACGCGG
CCTTTATCGTGACAACCGCAACCGCAATCAGCCCGGCAACACTTCCCGCC
CTGATCATGACCTCGCTGTTTGGCGTGACGACGGCGCTGCTCTTGGTAAC
GCGGAAGCGTCAGTCTCAGATCGCGGAGCTCACCATTCTGCTGCCGATGG
CGGTGATTATCGCAATTGTCCTGCCAATCCGGTTGCTGCATCTGCAGGAG
TTCGAGTCCTTCACCGGCACGCTCATCATGCTTATGGCGGTGGCGACCGT
TTTTAACCTGACGGTCGTGCCGCAGATTTGCACCTGGACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18848:74..1213+

>mRNA_P-wetherbeei_contig18848.1.1 ID=mRNA_P-wetherbeei_contig18848.1.1|Name=mRNA_P-wetherbeei_contig18848.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1131bp|location=Sequence derived from alignment at P-wetherbeei_contig18848:74..1213+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCTTCTCTCTTCTGCATCGTGTTTTTTTCATCCCTGAATTTCGG
TGCGTCGCATCTTCCCGGTTCGGATGGTGAAGCCTCCAGCGCCTCAAGGG
GGCTGCAATTCACTGTTGAAGGCGAGGCCGCCGCTGCAAAGCTGGTGGCG
GACCTCCAGCAAATCCAGGAGGTGGGAACGGTCCGCTGGATGGGAACATT
CCTGCCCCAGCAGGTCGAGCAGAAACGCAAAATTCTGCAGGACCTCGCCG
GGACAATACCGGGTGTGAGTGACGGCGGTGCCGTCGGCCCCTACGACCTG
CTCGAGAATCTGCGTGGAATTGAAACGGGTTTGCGCGTTATTTCCGATGG
CGCTGGAACCGACGATGGCCTGCGCGCCAGCGCCCATGAACTTCGCCGCT
CCCTCGCTGTGCTGGCCAGCACCAGCAAGACACCTGAATCGACCGCCGCG
GAACTCGAGCGGTTTTTGTTTTCGGGCTTTGGCGAACTGACGAAAACCGC
CGATGCACTGTCGCGCCTGACGGCCCCCAAACTCCCCGATCTTGATCAAA
ACCTGCGCGCCCTTTACGTGGCGAATGGCGACAGGTGGCGGGTCGAGGCC
TTGCCCAAACGCCTGATATCGGCTGCCGCCTTTATCGACGCAACGAAGGG
AGTAGATGCCATACCCCTCGGCCCTCTGATGACCGAGCAGGCGGAACTGC
GTTCCCTCGCATCAGCCTCCAAATCAGCCCTGACATTTGGATTTATATTT
ACGCTGCTCATCACGCTCGCCTATCTCCGCAGCATTGTGGATTGGCTGAT
TGTCGTAGCATCCTCATTCCTGCTCTTGCCGCTTTACGCGGCCTTTATCG
TGACAACCGCAACCGCAATCAGCCCGGCAACACTTCCCGCCCTGATCATG
ACCTCGCTGTTTGGCGTGACGACGGCGCTGCTCTTGGTAACGCGGAAGCG
TCAGTCTCAGATCGCGGAGCTCACCATTCTGCTGCCGATGGCGGTGATTA
TCGCAATTGTCCTGCCAATCCGGTTGCTGCATCTGCAGGAGTTCGAGTCC
TTCACCGGCACGCTCATCATGCTTATGGCGGTGGCGACCGTTTTTAACCT
GACGGTCGTGCCGCAGATTTGCACCTGGACC
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