mRNA_P-wetherbeei_contig18847.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18847.2.1
Unique NamemRNA_P-wetherbeei_contig18847.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: D7G8G8_ECTSI (Chk2, checkpoint kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.190e-16
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   10 VKDPRISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNPKKR 216
            V D RIS++HCRI+C   +  LG    EVYVEDMS NGTWIN   +L   Q+RLL+SGDEISL NP K+
Sbjct:   99 VADRRISSKHCRIYCEHLSGHLGG--TEVYVEDMSANGTWINQRMKLVRGQRRLLHSGDEISLLNPFKK 165          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A1Z5JG87_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG87_FISSO)

HSP 1 Score: 64.3 bits (155), Expect = 5.040e-10
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   25 ISARHCRIFCVRSTSSLGSGA----MEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNP---KKRI 219
            IS RHCRIFC   +S    G     M+V++EDMS NGT +N    LR  +KR+L++GDEI L NP   KK+I
Sbjct:  146 ISNRHCRIFCCLDSSLTQPGVTLPRMQVFLEDMSGNGTIVNQTTLLRRGEKRMLHTGDEICLVNPHTLKKKI 217          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A1Z5JAW3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JAW3_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 6.890e-10
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   25 ISARHCRIFCVRSTSSLGSGA----MEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNP---KKRI 219
            IS RHCRIFC   +S    G     M+V++EDMS NGT +N    LR  +KR+L++GDEI L NP   KK+I
Sbjct:  145 ISNRHCRIFCCLDSSLTQPGITLPRMQVFLEDMSGNGTIVNQTTLLRRGEKRMLHTGDEICLVNPHTLKKKI 216          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A448ZDU1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDU1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.790e-7
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   25 ISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNP---KKRISNDRDAGAV--SFTFVLL 267
            IS RHCRIF   + S       +++VED S NGT+IN + +L+  + R+L+SGD I L N    +KR+S+DR    V   F+F+++
Sbjct:  139 ISNRHCRIFHQNNGS-------QIFVEDNSGNGTFINQQTKLQKGETRILHSGDVICLVNHETLRKRLSSDRIIQFVLQQFSFIVV 217          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A067QEX6_ZOONE (Serine/threonine-protein kinase Chk2 n=1 Tax=Zootermopsis nevadensis TaxID=136037 RepID=A0A067QEX6_ZOONE)

HSP 1 Score: 53.5 bits (127), Expect = 2.990e-6
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   25 ISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNPKKRI 219
            IS +HCRI  VR+  S  SG  EVY+ED S NGT++NSE ++    KR+L + D ISL +P+ ++
Sbjct:   72 ISKQHCRI--VRTEVS--SGTPEVYLEDYSSNGTYVNSE-KIGKGNKRILKNNDHISLASPQFKV 131          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A077W8C0_9FUNG (Uncharacterized protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077W8C0_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 3.710e-5
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   19 PRISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNPKKRISND 228
            P IS  HC I+     +    G + VY+EDMS NGT++N +     +++R+L SGD I L   +K  S D
Sbjct:  155 PEISKNHCCIYMESGNNGRQKG-INVYLEDMSSNGTFVNGQRVQSDDRRRILRSGDNIQLYRKEKMPSED 223          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A068SEH7_9FUNG (Serine threonine-protein kinase chk2 n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068SEH7_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 5.070e-5
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   19 PRISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNPKKRISND 228
            P +S  HC I+     +    G + VY+EDMS NGT++N +     +++R+L SGD I L   +K  S+D
Sbjct:  162 PEVSKNHCCIYMESGNNGRQKG-INVYLEDMSSNGTFVNGQRVASDDRRRILRSGDYIQLYRKEKMPSDD 230          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A7R8XE05_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XE05_9CRUS)

HSP 1 Score: 49.7 bits (117), Expect = 6.890e-5
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   25 ISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNP 207
            IS RH RIF  + T+ LGS   ++Y+ED+S NGT++N E ++   QKR+L + D I+L +P
Sbjct:  106 ISKRHFRIF--QETTLLGS---DIYIEDLSSNGTYLNGE-KIGKGQKRVLTNNDVIALASP 160          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A2Z5U631_9NEOP (Putative serine/threonine-protein kinase CHK2 n=1 Tax=Reticulitermes speratus TaxID=60591 RepID=A0A2Z5U631_9NEOP)

HSP 1 Score: 49.3 bits (116), Expect = 9.300e-5
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   25 ISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISLCNPKKRI 219
            IS RHC+I  V++T        EVY+ED S NGT++NSE  +   ++R+L + D+ISL +P+ R+
Sbjct:   73 ISKRHCKI--VKATP-------EVYLEDYSFNGTYVNSEI-IGRGKRRILKNNDQISLASPQFRV 127          
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Match: A0A1X2GKY5_9FUNG (Pkinase-domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GKY5_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 9.490e-5
Identity = 29/68 (42.65%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   10 VKDPRISARHCRIFCVRSTS-----SLGSGAMEVYVEDMSVNGTWINSECRLRTNQKRLLNSGDEISL 198
            V  P IS RHC I+ V++       S  S    VY+ED S+NGT++N E ++   Q+ LLN GD I L
Sbjct:  151 VTRPEISQRHCLIYFVKNGKPDQYGSDRSREFSVYLEDQSLNGTYVNGE-KIGKGQRVLLNDGDRIQL 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18847.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G8G8_ECTSI2.190e-1659.42Chk2, checkpoint kinase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5JG87_FISSO5.040e-1050.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5JAW3_FISSO6.890e-1050.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A448ZDU1_9STRA4.790e-740.70Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A067QEX6_ZOONE2.990e-647.69Serine/threonine-protein kinase Chk2 n=1 Tax=Zoote... [more]
A0A077W8C0_9FUNG3.710e-538.57Uncharacterized protein n=1 Tax=Lichtheimia ramosa... [more]
A0A068SEH7_9FUNG5.070e-537.14Serine threonine-protein kinase chk2 n=1 Tax=Licht... [more]
A0A7R8XE05_9CRUS6.890e-545.90Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A2Z5U631_9NEOP9.300e-543.08Putative serine/threonine-protein kinase CHK2 n=1 ... [more]
A0A1X2GKY5_9FUNG9.490e-542.65Pkinase-domain-containing protein n=1 Tax=Hesselti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18847contigP-wetherbeei_contig18847:1045..1314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8G8
PFAMsPkinase
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K00871,ko:K08794
KEGG Pathwayko04020,ko04910,ko04921,ko04922,ko04925,map04020,map04910,map04921,map04922,map04925
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.6e-17
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17,2.7.11.19
Descriptionprotein serine/threonine kinase activity
Cds size270
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.7613406-CDS-P-wetherbeei_contig18847:1044..13141683186156.7613406-CDS-P-wetherbeei_contig18847:1044..1314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18847 1045..1314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18847.2.1prot_P-wetherbeei_contig18847.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18847 1045..1314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18847.2.1

>prot_P-wetherbeei_contig18847.2.1 ID=prot_P-wetherbeei_contig18847.2.1|Name=mRNA_P-wetherbeei_contig18847.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MPAVKDPRISARHCRIFCVRSTSSLGSGAMEVYVEDMSVNGTWINSECRL
RTNQKRLLNSGDEISLCNPKKRISNDRDAGAVSFTFVLLN
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mRNA from alignment at P-wetherbeei_contig18847:1045..1314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18847.2.1 ID=mRNA_P-wetherbeei_contig18847.2.1|Name=mRNA_P-wetherbeei_contig18847.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig18847:1045..1314+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCAGTGAAGGATCCGCGCATCAGCGCGCGGCACTGCCGCATCTT CTGCGTGCGCTCAACGTCGTCGCTGGGCAGCGGAGCGATGGAGGTGTACG TTGAAGACATGAGCGTGAACGGCACGTGGATCAACAGCGAGTGCCGGCTG CGCACCAACCAGAAGCGCCTTCTCAACAGCGGCGACGAGATCAGCCTCTG CAACCCGAAAAAGCGCATCAGCAACGACAGGGACGCCGGCGCCGTCTCCT TCACTTTTGTCCTTTTGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18847:1045..1314+

>mRNA_P-wetherbeei_contig18847.2.1 ID=mRNA_P-wetherbeei_contig18847.2.1|Name=mRNA_P-wetherbeei_contig18847.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig18847:1045..1314+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCAGTGAAGGATCCGCGCATCAGCGCGCGGCACTGCCGCATCTT
CTGCGTGCGCTCAACGTCGTCGCTGGGCAGCGGAGCGATGGAGGTGTACG
TTGAAGACATGAGCGTGAACGGCACGTGGATCAACAGCGAGTGCCGGCTG
CGCACCAACCAGAAGCGCCTTCTCAACAGCGGCGACGAGATCAGCCTCTG
CAACCCGAAAAAGCGCATCAGCAACGACAGGGACGCCGGCGCCGTCTCCT
TCACTTTTGTCCTTTTGAAC
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