mRNA_P-wetherbeei_contig18845.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18845.1.1
Unique NamemRNA_P-wetherbeei_contig18845.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: D7FPV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV9_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.320e-48
Identity = 86/170 (50.59%), Postives = 114/170 (67.06%), Query Frame = 1
Query:    1 LAAALHESGS---SKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDWARSYIAFHGLAPP 501
            LA  LH+ G    ++ AL  Y+R LELD  D +  RRGL R L+D GDA +ARA+IDR+P+DR   + WS+AAIEFVAW VL EDGS    A  AL  A  ANPFV W +A+R +F+EV+E+ +EI++PP G+V EAFWY   EG LW  L+GA +W   ++  + + PP
Sbjct:  202 LAQRLHDGGKESQTEEALKRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDRFPDDRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNEMLPP 371          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A835Z3Z8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z8_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.900e-46
Identity = 85/168 (50.60%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPE-DRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDWARSYIAFHGLAPP 501
            L  A   +G SK A+ ++ RCL LD +DA+  RRGL R LMD   A  ARALI+R+ + D  A L WS+ AIE+++WR+L EDGS  A A AAL+AAYAANPFV W LA+   F +VLEY ++I++P   TVEEAF YCS E +LW DL+GA +W   ++       P
Sbjct:  140 LGGACLAAGKSKDAIQHFERCLVLDPSDAVRARRGLVRALMDRSLADRARALIERFRDTDTGAVLSWSLVAIEYISWRLLGEDGSDEAVAAAALEAAYAANPFVAWQLAFADEFADVLEYVDDIRDPAPSTVEEAFQYCSWEAALWQDLEGAAEWIAGWLIARAAPAP 307          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: W4GTU8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GTU8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.140e-31
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDWARSYIAFHGL 492
            LA A   +G  +  + ++  C+ELD  DA   R GL   L+D G A EAR LIDR+ E+ S  L +    IE+V+W VL EDGSS     AA   A+  NPF+  ++A    F  V+EY E+I+NPP G++EEAF YC+H   +W D  GA  W +  +A  G+
Sbjct:  146 LALATCAAGMMEAGIAHFEECIELDPTDAACARDGLVCALIDEGRADEARGLIDRY-ENVSPVLEYCRTIIEYVSWEVLEEDGSSEDVVQAAFTKAWDGNPFIGVFIAGLDAFNAVVEYVEDIKNPPKGSIEEAFVYCAHNIGVWLDTVGAQAWIQKEVAARGI 308          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A0P1AIT8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIT8_PLAHL)

HSP 1 Score: 112 bits (279), Expect = 1.200e-26
Identity = 63/159 (39.62%), Postives = 88/159 (55.35%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDWARSYI 477
            LA A  E+G   R +  Y  C+ LD  D +    GL   L+D G   +ARALI++  +++SA L +    IE+V+W VL E+GSS A    AL  AY  NPF+   +AY   F +V+EY +EI+NP  G++EEAF Y      +W D  GA  W    +
Sbjct:  117 LAVACCEAGMPDRGIKSYELCMTLDKNDTIRSCEGLVCVLIDEGRGVDARALIEKHMDEKSAVLAYCEVIIEYVSWEVLEEEGSSEAAVQKALRKAYELNPFIAVVIAYHDTFLQVVEYVDEIKNPKRGSIEEAFRYVLKNIGVWVDTVGACHWIEKEL 275          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A2D4C5A5_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5A5_PYTIN)

HSP 1 Score: 110 bits (275), Expect = 2.060e-25
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDWARSYI 477
            LA A  ++G   R +  YR C+ LD  D L  R GL   L+D G  AEARALI+++  + SA L +    +E+V+W VL E+GSS      A   A+  NPF+  +++    F + +EY E+I+ P VG++EEAF YC +   +W D  GA  W    +
Sbjct:  231 LAEACCQAGMPDRGIKNYRLCMTLDKDDTLRSREGLTCALIDEGKGAEARALIEKYRGNASAVLAYCRVILEYVSWEVLEEEGSSEEIVREAFLEAFKLNPFIAVFISAHESFFQAVEYVEDIKEPKVGSIEEAFVYCCNNIGVWLDTVGACAWIEKEL 389          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A3R6XX80_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XX80_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.660e-18
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPP 381
            LA A   +G  +  + ++  C+ELD  DA   R GL   L+D G A EAR LIDR+ E+ S  L +    IE+V+W VL EDGSS     AA   A+  NPF+  ++A    F  V+EY E+I+NPP
Sbjct:  146 LALATCAAGMMEAGIAHFEECIELDPTDAACARDGLVCALIDEGRADEARGLIDRY-ENVSPVLEYCRTIIEYVSWEVLEEDGSSEDVVQAAFTKAWDGNPFIGVFIAGLDAFNAVVEYVEDIKNPP 271          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A397AXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AXI9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.800e-18
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   43 LPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPP 381
            + ++  C+ELD  DA   R GL   L+D G A EAR LIDR+ E+ S  L +    IE+V+W VL EDGSS     AA   A+  NPF+  ++A    F  V+EY E+I+NPP
Sbjct:    5 IAHFEECIELDPTDAACARDGLVCALIDEGRADEARGLIDRY-ENVSPVLEYCRTIIEYVSWEVLEEDGSSEDVVQAAFTKAWDGNPFIGVFIAGLDAFNAVVEYVEDIKNPP 116          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A397BTR7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BTR7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.090e-17
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   43 LPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPP 381
            + ++  C+ELD  DA   R GL   L+D G A EAR LIDR+ E+ S  L +    IE+V+W VL EDGSS     AA   A+  NPF+  ++A    F  V+EY E+I+NPP
Sbjct:    5 IAHFEECIELDPTDAACARDGLVCALIDEGRADEARGLIDRY-ENVSPVLEYCRTIIEYVSWEVLEEDGSSEDVVQAAFTKAWDGNPFIGVFIAGLDAFNAVVEYVEDIKNPP 116          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A7C6ERY5_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A7C6ERY5_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 8.250e-7
Identity = 47/154 (30.52%), Postives = 70/154 (45.45%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDW 462
            LA  L   G   +A+ ++   L LDA D L +R  L +CL++ G   EA  L+DR+PED+SA+  +S A + +               A+ +L  A  ANP+V ++L    ++E   E    I     G   EA  Y       W    GA +W
Sbjct:  161 LAQCLWMMGERAQAIDHFEDLLRLDAVDHLGLRHALIQCLLEEGRDKEALNLLDRYPEDKSATWAYSHALLHY-------RQSGEGKEAEQSLRRALEANPYVPFYLL--GLWELPDELPSSIGR---GDENEAIIYAVESWRSWEKTPGALEW 302          
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Match: A0A7C2CMY9_9BACT (Tetratricopeptide repeat protein n=2 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A7C2CMY9_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 3.900e-6
Identity = 49/154 (31.82%), Postives = 72/154 (46.75%), Query Frame = 1
Query:    1 LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEARALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAANPFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDGAGDW 462
            LA  L   G   +A+ ++   L LD+ D L +R  L  CL++A   AEA  L+DR+PED+SA+  +S A + +   R   E   S  +   ALD     NP+V ++L    ++E   E    I +   G   EA  Y       W    GA +W
Sbjct:  162 LAQCLWMMGERAQAIEHFEDLLRLDSVDHLGLRHALIHCLIEADRDAEALNLLDRYPEDKSATWAYSHALLHY---RQSGEKKESEQSLRQALDV----NPYVPFYLL--GLWELPDELPTTISH---GDENEAIIYAVESWRSWEKTPGALEW 303          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FPV9_ECTSI1.320e-4850.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3Z8_9STRA1.900e-4650.60Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
W4GTU8_9STRA3.140e-3142.07Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A0P1AIT8_PLAHL1.200e-2639.62Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A2D4C5A5_PYTIN2.060e-2538.36Sm domain-containing protein n=1 Tax=Pythium insid... [more]
A0A3R6XX80_9STRA2.660e-1842.52Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A397AXI9_9STRA3.800e-1844.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397BTR7_9STRA1.090e-1744.25Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7C6ERY5_9BACT8.250e-730.52Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A7C2CMY9_9BACT3.900e-631.82Tetratricopeptide repeat protein n=2 Tax=Candidatu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18845contigP-wetherbeei_contig18845:98..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPV9
Model size501
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.16e-49
EggNOG OGs2C0FH@1|root,2QU7Q@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008510.1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186156.6682088-CDS-P-wetherbeei_contig18845:97..2611683186156.6682088-CDS-P-wetherbeei_contig18845:97..261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18845 98..261 +
1683186156.6806252-CDS-P-wetherbeei_contig18845:558..7391683186156.6806252-CDS-P-wetherbeei_contig18845:558..739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18845 559..739 +
1683186156.693763-CDS-P-wetherbeei_contig18845:1108..12641683186156.693763-CDS-P-wetherbeei_contig18845:1108..1264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18845 1109..1264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18845.1.1prot_P-wetherbeei_contig18845.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18845 98..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18845.1.1

>prot_P-wetherbeei_contig18845.1.1 ID=prot_P-wetherbeei_contig18845.1.1|Name=mRNA_P-wetherbeei_contig18845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
LAAALHESGSSKRALPYYRRCLELDAADALAVRRGLARCLMDAGDAAEAR
ALIDRWPEDRSASLRWSMAAIEFVAWRVLAEDGSSAATADAALDAAYAAN
PFVCWWLAYRPIFEEVLEYTEEIQNPPVGTVEEAFWYCSHEGSLWADLDG
AGDWARSYIAFHGLAPP
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mRNA from alignment at P-wetherbeei_contig18845:98..1264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18845.1.1 ID=mRNA_P-wetherbeei_contig18845.1.1|Name=mRNA_P-wetherbeei_contig18845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig18845:98..1264+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCAGCGGCGCTGCATGAGTCGGGCAGCTCGAAGCGGGCGTTGCCGTA CTACCGCCGCTGCCTCGAGCTCGACGCTGCCGACGCGCTGGCGGTGCGGC GGGGACTGGCGCGCTGCCTGATGGACGCCGGGGACGCCGCCGAGGCGCGC GCCCTCATCGACCGGTGCGTTGCGCTTTGCGGTTTGACTTGCTTTTGCTG GTCAGGGAAGAGGAAGCATCGGCGTCAGTTTGGATGATTGAAAGGAAATC AAGCGGGCCTTTTCCTGCATTCGGTCACACGCGCTTTCACTTCTTGAGGG CGCCCTCAAGTCTGGCTATTGTCCGCAGGCTGTTTCTACCTTTGCCCGTG GGTTTAGAGATTGACCTTCTCCTCAGCAGATTAAACTACCACTTCCAACA AACGCTTCAGCAACCGCTTTTCTTCAAAGCACGGCCGAAAGAACCGAATC TGCTCCTACAGATGGCCGGAGGACAGGAGCGCGTCGCTGCGGTGGTCAAT GGCGGCCATCGAGTTTGTGGCGTGGCGGGTGCTGGCCGAGGACGGCTCGT CCGCGGCGACCGCCGACGCCGCCCTCGACGCCGCCTACGCCGCCAACCCG TTTGTCTGCTGGTGGCTCGCCTACCGTCCCATCTTTGAGGAGGTGAGGGA GAGCGCGGCATGTGTGGTTTGGGTTTCGAGAGGAGATCCGGCAGGGTGGC TGAACAGTTTCTCTTTCCTCCGTGGCGTTAGAAAGCGTTACAGGTGTCGG TTTTACCGTCAGGGAGTCTTTAAAGCGGCTATATTTGGCTTTCAGCTTTA CCAATCCCAGCGAAAGCAAACATCTTTGTTACTTCGACGGATGGTAATAT GGATGGTAAATAGAGCATTCGGTCTTTCATCAAAGGATTCCATCGCTTCC TTGGCGCGCCCCGTCGTTCTTCAACCGTTCAGTCCTTAAACATCGATCTA TTTCACTCCACTCGACTCTTGTCGACCGCTTCAACCTGTTTCAACTGGTT CCTAACAAAAGGTGCTAGAGTACACGGAGGAGATTCAGAACCCGCCGGTC GGCACGGTTGAAGAGGCGTTCTGGTACTGCTCCCATGAAGGGTCCCTCTG GGCCGACCTGGACGGTGCCGGCGACTGGGCACGAAGCTACATCGCCTTCC ATGGCCTAGCACCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18845:98..1264+

>mRNA_P-wetherbeei_contig18845.1.1 ID=mRNA_P-wetherbeei_contig18845.1.1|Name=mRNA_P-wetherbeei_contig18845.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig18845:98..1264+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGCAGCGGCGCTGCATGAGTCGGGCAGCTCGAAGCGGGCGTTGCCGTA
CTACCGCCGCTGCCTCGAGCTCGACGCTGCCGACGCGCTGGCGGTGCGGC
GGGGACTGGCGCGCTGCCTGATGGACGCCGGGGACGCCGCCGAGGCGCGC
GCCCTCATCGACCGATGGCCGGAGGACAGGAGCGCGTCGCTGCGGTGGTC
AATGGCGGCCATCGAGTTTGTGGCGTGGCGGGTGCTGGCCGAGGACGGCT
CGTCCGCGGCGACCGCCGACGCCGCCCTCGACGCCGCCTACGCCGCCAAC
CCGTTTGTCTGCTGGTGGCTCGCCTACCGTCCCATCTTTGAGGAGGTGCT
AGAGTACACGGAGGAGATTCAGAACCCGCCGGTCGGCACGGTTGAAGAGG
CGTTCTGGTACTGCTCCCATGAAGGGTCCCTCTGGGCCGACCTGGACGGT
GCCGGCGACTGGGCACGAAGCTACATCGCCTTCCATGGCCTAGCACCGCC
A
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