mRNA_P-wetherbeei_contig18810.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18810.1.1
Unique NamemRNA_P-wetherbeei_contig18810.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A2D9SZP6_9DELT (DNA methylase n=1 Tax=Sandaracinus sp. TaxID=2024858 RepID=A0A2D9SZP6_9DELT)

HSP 1 Score: 92.8 bits (229), Expect = 5.930e-22
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   16 TQFARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMI 309
            TQ AR LR+ TS+TE KLWPHLR+  LG  FR+QH I   + DY C  LKL +EVDG  H P  DA +D     +G    R  + +ID+NL GV++ +
Sbjct:   19 TQRARDLRQNTSKTELKLWPHLRNKNLGYSFRRQHPIGPYFADYYCAALKLAIEVDGDWHAPQKDAARDAFFASKGILTHRIHISDIDENLDGVIEAL 116          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: UPI000A828527 (DUF559 domain-containing protein n=1 Tax=Sphingomonas pituitosa TaxID=99597 RepID=UPI000A828527)

HSP 1 Score: 83.2 bits (204), Expect = 3.820e-18
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   25 ARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMIYDEVQMR 330
            AR++RR  +  E +LW HL + QLG  FR+Q VI     D+ C    L++EVDG THDP  DAR+D  +  +G+  +RFS  ++ +N+ GV+  I + +Q R
Sbjct:   11 AREMRRTPTELEKRLWRHLSNTQLGHKFRRQQVIFPYICDFFCPAKGLVIEVDGDTHDPARDARRDALLLSQGFLTLRFSNHDVFENIDGVLAAIVNTLQAR 112          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: UPI0012E96742 (endonuclease domain-containing protein n=1 Tax=Sphingomonas profundi TaxID=2681549 RepID=UPI0012E96742)

HSP 1 Score: 82.8 bits (203), Expect = 5.000e-18
Identity = 44/102 (43.14%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   19 QFARKLRRETSRTEDKLWPHLRSAQLGA-PFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMIYDEV 321
            Q A  +R   +  E +LW HL + QLG   FR+Q VI     D+ C    L+VEVDG THDP  D R+D R+ R GY+VIRF+  ++  N+ GV+  I  +V
Sbjct:    8 QHATAMRNAPTEAEKRLWRHLSNRQLGGFKFRRQAVIGSIIADFLCPAHALVVEVDGDTHDPSADGRRDERLARIGYHVIRFTNHDVIANMEGVLSAILAKV 109          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A418W7U2_9SPHN (Endonuclease domain-containing protein n=2 Tax=Sphingomonas cavernae TaxID=2320861 RepID=A0A418W7U2_9SPHN)

HSP 1 Score: 82.8 bits (203), Expect = 7.310e-18
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   25 ARKLRRETSRTEDKLWPHLRSAQLGA-PFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMI 309
            AR++R E +  E  LW  L ++QLG   FR+Q VI     D+ C  + L+VEVDG THDPV D ++D  + +RG++V+RF+  E+ +N+ GV++ I
Sbjct:   12 ARQMRNEPTEFEKLLWRRLSNSQLGGFKFRRQSVIGSYICDFFCPSVGLVVEVDGDTHDPVADNKRDSHLRQRGFHVLRFTNGEVGRNIEGVLEAI 107          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A2M7LAP4_9SPHN (DUF559 domain-containing protein n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LAP4_9SPHN)

HSP 1 Score: 81.3 bits (199), Expect = 1.630e-17
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   34 LRRETSRTEDKLWPHLRSAQLGA-PFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMIYDEVQ 324
            +RR  +  E +LW HL ++QLG   FR+Q VID+   D+ C   KLIVEVDG THD   D ++D R+  +GY  +RF   ++ +N+ GV+ ++ D ++
Sbjct:    1 MRRNPTEPEKRLWRHLSASQLGGHKFRRQAVIDYYIADFFCPLKKLIVEVDGDTHDVEADFKRDDRLRNKGYRTVRFGNLDVMENMEGVLLVLRDALE 98          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A4R3JWC7_9PROT (Very-short-patch-repair endonuclease n=1 Tax=Sulfuritortus calidifontis TaxID=1914471 RepID=A0A4R3JWC7_9PROT)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-17
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   25 ARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTH--DPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMIYDE 318
            AR+LR   +  E +LW HLR  QLG  FR+Q+ +     D+ CVPLKL++E+DG  H      D R+D  +  +G++++RF   ++ QN+ GVV+ I+ E
Sbjct:    9 ARRLRSNMTEAEQRLWRHLRGGQLGVAFRRQYPVGPYVVDFACVPLKLLIELDGGQHMEAQAYDQRRDAWLRGKGFHLMRFWNHDVMQNIDGVVEAIWRE 108          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A840Z8G6_9SPHN (Very-short-patch-repair endonuclease n=2 Tax=Sphingomonas endophytica TaxID=869719 RepID=A0A840Z8G6_9SPHN)

HSP 1 Score: 80.9 bits (198), Expect = 2.980e-17
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   25 ARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMIYDEVQMR 330
            A ++RR  +  E +LW  L   +LG  FR+QHVI     D+ C    LIVEVDG THDP  D+ +D  +  +G++ +RFS Q++ +N+ GV+  I   +Q R
Sbjct:   10 AAEMRRNPTEWEKRLWRELSGTKLGHKFRRQHVIAPYIADFFCPAKGLIVEVDGDTHDPAADSARDRFIASKGFHTLRFSNQDVRENMDGVLLTIVAALQAR 111          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A220W3M9_9SPHN (DNA-cytosine methyltransferase n=3 Tax=Sphingomonadales TaxID=204457 RepID=A0A220W3M9_9SPHN)

HSP 1 Score: 80.9 bits (198), Expect = 3.300e-17
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   25 ARKLRRETSRTEDKLWPHLRSAQL-GAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVV 300
            AR++RR  +  E +LW HL ++QL G  FR+Q VID+   D+ C   KLIVEVDG THD   D ++D R+ ++GY  +RFS  ++  N+ GV+
Sbjct:   11 AREMRRNPTEPEKRLWRHLSASQLAGHKFRRQAVIDYYIADFFCPLKKLIVEVDGDTHDIDSDFKRDDRLRKKGYRTVRFSNLDVMGNMDGVL 103          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: UPI00178DEF3C (DUF559 domain-containing protein n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI00178DEF3C)

HSP 1 Score: 81.6 bits (200), Expect = 3.640e-17
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   25 ARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMIYDEVQ 324
            AR +R   + +E +LW  L   Q+GA FR+Q VI     D+ C  L+L++EVDG THD   DA++D R+   GY V+RF+  ++  NL GV+ +I ++V+
Sbjct:   36 ARDMRNSPTESEKRLWRALSRKQVGAKFRRQSVIPPFIVDFLCPALRLVIEVDGDTHDQAVDAKRDARLLALGYRVLRFTNADVVGNLDGVLTVILNDVE 135          
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Match: A0A074M2Q3_ERYLO (DUF559 domain-containing protein n=2 Tax=Erythrobacter longus TaxID=1044 RepID=A0A074M2Q3_ERYLO)

HSP 1 Score: 80.1 bits (196), Expect = 4.070e-17
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   16 TQFARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYCCVPLKLIVEVDGPTHD--PVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVVDMI 309
            T  AR LRRE +  E  LW HL   Q GA F +Q  I   Y D+ C  LKL++E+DG +HD  P  DA +D  M   GY V+RF+  ++ +N+ GVV  I
Sbjct:    9 TNRARTLRREATPAERALWEHLSRGQQGAKFSRQMPIGQFYADFLCRELKLVIELDGHSHDIAPERDAVRDKWMRTEGYTVLRFTNAQVHENIEGVVTAI 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18810.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9SZP6_9DELT5.930e-2247.96DNA methylase n=1 Tax=Sandaracinus sp. TaxID=20248... [more]
UPI000A8285273.820e-1841.18DUF559 domain-containing protein n=1 Tax=Sphingomo... [more]
UPI0012E967425.000e-1843.14endonuclease domain-containing protein n=1 Tax=Sph... [more]
A0A418W7U2_9SPHN7.310e-1842.71Endonuclease domain-containing protein n=2 Tax=Sph... [more]
A0A2M7LAP4_9SPHN1.630e-1740.82DUF559 domain-containing protein n=1 Tax=Sphingomo... [more]
A0A4R3JWC7_9PROT1.720e-1740.00Very-short-patch-repair endonuclease n=1 Tax=Sulfu... [more]
A0A840Z8G6_9SPHN2.980e-1740.20Very-short-patch-repair endonuclease n=2 Tax=Sphin... [more]
A0A220W3M9_9SPHN3.300e-1745.16DNA-cytosine methyltransferase n=3 Tax=Sphingomona... [more]
UPI00178DEF3C3.640e-1741.00DUF559 domain-containing protein n=1 Tax=Sphingomo... [more]
A0A074M2Q3_ERYLO4.070e-1744.00DUF559 domain-containing protein n=2 Tax=Erythroba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18810contigP-wetherbeei_contig18810:478..819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1280946.HY29_04585
PFAMsDUF559
Model size342
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.33e-24
EggNOG OGsCOG2852@1|root,COG2852@2|Bacteria,1N2R3@1224|Proteobacteria,2UDGV@28211|Alphaproteobacteria
DescriptionProtein of unknown function (DUF559)
Cds size342
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.9184775-CDS-P-wetherbeei_contig18810:477..8191683186155.9184775-CDS-P-wetherbeei_contig18810:477..819Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18810 478..819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18810.1.1prot_P-wetherbeei_contig18810.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18810 478..819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18810.1.1

>prot_P-wetherbeei_contig18810.1.1 ID=prot_P-wetherbeei_contig18810.1.1|Name=mRNA_P-wetherbeei_contig18810.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
RSREETQFARKLRRETSRTEDKLWPHLRSAQLGAPFRKQHVIDHRYPDYC
CVPLKLIVEVDGPTHDPVCDARKDHRMNRRGYYVIRFSVQEIDQNLRGVV
DMIYDEVQMRLMAK
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mRNA from alignment at P-wetherbeei_contig18810:478..819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18810.1.1 ID=mRNA_P-wetherbeei_contig18810.1.1|Name=mRNA_P-wetherbeei_contig18810.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig18810:478..819+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTCACGCGAAGAAACGCAGTTCGCCCGCAAGCTTCGCCGCGAAACCTC GCGAACAGAGGATAAACTCTGGCCGCACCTGCGCTCGGCCCAGCTTGGTG CGCCATTCCGCAAGCAGCACGTCATCGACCACAGATATCCAGACTATTGT TGCGTGCCGCTGAAGCTGATCGTCGAGGTCGATGGACCAACGCATGATCC CGTTTGCGACGCGCGGAAGGATCATCGCATGAACCGTCGAGGCTACTACG TCATCCGCTTCAGCGTCCAGGAGATCGATCAGAACCTGCGGGGCGTGGTC GATATGATCTATGACGAAGTGCAGATGCGGCTGATGGCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18810:478..819+

>mRNA_P-wetherbeei_contig18810.1.1 ID=mRNA_P-wetherbeei_contig18810.1.1|Name=mRNA_P-wetherbeei_contig18810.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig18810:478..819+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTCACGCGAAGAAACGCAGTTCGCCCGCAAGCTTCGCCGCGAAACCTC
GCGAACAGAGGATAAACTCTGGCCGCACCTGCGCTCGGCCCAGCTTGGTG
CGCCATTCCGCAAGCAGCACGTCATCGACCACAGATATCCAGACTATTGT
TGCGTGCCGCTGAAGCTGATCGTCGAGGTCGATGGACCAACGCATGATCC
CGTTTGCGACGCGCGGAAGGATCATCGCATGAACCGTCGAGGCTACTACG
TCATCCGCTTCAGCGTCCAGGAGATCGATCAGAACCTGCGGGGCGTGGTC
GATATGATCTATGACGAAGTGCAGATGCGGCTGATGGCGAAG
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