mRNA_P-wetherbeei_contig18808.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18808.3.1
Unique NamemRNA_P-wetherbeei_contig18808.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18808.3.1 vs. uniprot
Match: D7FGZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ3_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.880e-11
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   31 EELEEQRRQLAARRQVLEERTKLRLATTHEFGRLRVASLGKTKKAFTAQCAIAQKRNEDVLTK 219
            +ELE QRR+L ARR +LEER KLRLAT  EFG +    LG+ ++AF AQC  A++RN+ +L K
Sbjct:    6 DELESQRRELEARRAMLEERFKLRLATAQEFGMIHTQRLGRVREAFVAQCGAARRRNQSILDK 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18808.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGZ3_ECTSI2.880e-1155.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18808contigP-wetherbeei_contig18808:898..1116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_002870.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.8877625-CDS-P-wetherbeei_contig18808:897..11161683186155.8877625-CDS-P-wetherbeei_contig18808:897..1116Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18808 898..1116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18808.3.1prot_P-wetherbeei_contig18808.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18808 898..1116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18808.3.1

>prot_P-wetherbeei_contig18808.3.1 ID=prot_P-wetherbeei_contig18808.3.1|Name=mRNA_P-wetherbeei_contig18808.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MPFATSTARYEELEEQRRQLAARRQVLEERTKLRLATTHEFGRLRVASLG
KTKKAFTAQCAIAQKRNEDVLTK
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mRNA from alignment at P-wetherbeei_contig18808:898..1116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18808.3.1 ID=mRNA_P-wetherbeei_contig18808.3.1|Name=mRNA_P-wetherbeei_contig18808.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig18808:898..1116+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTTGCCACCTCCACGGCGCGCTACGAGGAGCTCGAGGAGCAGCG
CCGCCAGCTGGCAGCGAGGAGGCAGGTGCTCGAAGAGCGAACGAAGCTGC
GCTTGGCCACAACGCATGAGTTTGGCAGGTTGCGCGTCGCTAGCCTGGGA
AAGACGAAGAAGGCGTTCACCGCGCAATGCGCCATTGCCCAGAAACGAAA
CGAGGATGTGCTGACGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18808:898..1116+

>mRNA_P-wetherbeei_contig18808.3.1 ID=mRNA_P-wetherbeei_contig18808.3.1|Name=mRNA_P-wetherbeei_contig18808.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig18808:898..1116+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTTTGCCACCTCCACGGCGCGCTACGAGGAGCTCGAGGAGCAGCG
CCGCCAGCTGGCAGCGAGGAGGCAGGTGCTCGAAGAGCGAACGAAGCTGC
GCTTGGCCACAACGCATGAGTTTGGCAGGTTGCGCGTCGCTAGCCTGGGA
AAGACGAAGAAGGCGTTCACCGCGCAATGCGCCATTGCCCAGAAACGAAA
CGAGGATGTGCTGACGAAG
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