mRNA_P-wetherbeei_contig188.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig188.1.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI) HSP 1 Score: 350 bits (898), Expect = 9.650e-100 Identity = 291/889 (32.73%), Postives = 362/889 (40.72%), Query Frame = 2
Query: 395 ERQQETVALLSALRRGNVPVSEPRWLRLVLAGCAASGAVAARHAFALLLRAAEADPIAVARGVRQHAVLIPTFAGAEGFPG-------QPNLRDSLACVYYLRTLKVLVFSETRLEADPRADKASRLDFYRTIANSVRDERHRVALEAMQCIMDHPRAWDLVVDAQKTSNDMSIFPRVVARIKQCLHQAMEQMS---------------------------------------------------------GEGGSAWRRDWPLAHAACRVCREVGKTFQRAHSHEMLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSNWQAFSFSERAHTSANPFDSGPSPAPPMDSFLASLSPQLQPQSXXQPPLPPVEQPQCGGPERRLQGVPQPDQLLDLSSSCSSXXXXXXXXXXXXXXXRSVVEEENAKAIRGLCQALQRHGLLECSHLHVRSLALEAMFLLVPDPSDSDPALAALWDWLRRRMEQCPETLPDTVLGELVGSLLMRVQCSEAARAAVMPIALGITESFMRQRPSDHMATCVLRAWTQCISYSGDDGQRGGGPSGVGSSGGDGGCDGGRAEVLRSVYRVLDSHPPXXXXXXXLVAMATAAAHARQGSVTDLEGLGGVGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLQRPGSGVGLLKRRSSAASIHSMTL------------TGGMVAAGPPKVA---SYLRARAAYARLKRTALWFLGEHCLELTGSAL--------APSPLLQPASVXXXXXXLPLLAGGPFSNGAAAAPQXXXXXXXLSXESVHXXXXXXXXXXXXXXXXXXXXXXXLQQAALLEEYETRRVSVVALGKAAMALPEPSRFEIYAFLFGLVAS 2800
E Q + A+ SA+RR + L VL GC + +AARHAFA+L A P V++ + A+L+PT G PG +PNL DSLACVYYLR +K L F+ D RLD YRT+ +SV D RHRVALEAMQC++DHPRAW+L+V+AQ+ S D IF RVV RIK C+ +A + G G S +W LAHAACRVCR VG+TFQ A + S A A P S+ A L Q +S GP R P+P S R VVEE+N AIR LC+ALQ+H LLE HLHVRSLALEAMFLLVPDPS DP L LWDWL++R+EQCP TLPDTVL ELV +LL RVQCS +R V+PIAL +TESFM Q PS+ M CVLRAW QC Y G R VL+SVYR+LD + A A GSV D GG P + SG G A S++ +++ GG A G P YLR ++A RLKR+A WFLGE+C +LTG+ +P P + P+ + P G P + H L+ AA+ E+++TR AL K A+ LP+P RF+ Y FL GL S
Sbjct: 169 ESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLASAGGEPNLADSLACVYYLRAIKALAFAGA-------LDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLGHKKXXXXXXXXXXXXXXXAGNGPAGVGASEAHCNWALAHAACRVCRVVGRTFQVAIRP-------------------------------------------------CRTKIELVSTAAAAVAAP------------SWQARLRQQASAESVV-----------AAGPPAR---APRPSTPATAS--------------------RKVVEEQNTAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGR----------------------ARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDR------GGAARHVRGMASEDWTRQPISTGGAQGSEDGSQPGRIPPTIV---SGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRLKYLRTKSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQSPPPAETGGNELLDVWTSPVPS--PTKGGTGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMR-------LKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADS 915
BLAST of mRNA_P-wetherbeei_contig188.1.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE) HSP 1 Score: 348 bits (892), Expect = 4.570e-98 Identity = 293/875 (33.49%), Postives = 367/875 (41.94%), Query Frame = 2
Query: 395 ERQQETVALLSALRRGNVPVSEPRWLRLVLAGCAASGAVAARHAFALLLRAAEADPIAVARGVRQHAVLIPTFAGAEGFPG-------QPNLRDSLACVYYLRTLKVLVFSETRLEADPRADKASRLDFYRTIANSVRDERHRVALEAMQCIMDHPRAWDLVVDAQKTSNDMSIFPRVVARIKQCLHQAMEQMS-------------------------------------------------------GEGGSAWRRDWPLAHAACRVCREVGKTFQRAHSHEMLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSNWQAFSFSERAHTSANPFDSGPSPAPPMDSFLASLSPQLQPQSXXQPPLPPVEQPQCGGPERRLQGVPQPDQLLDLSSSCSSXXXXXXXXXXXXXXXRSVVEEENAKAIRGLCQALQRHGLLECSHLHVRSLALEAMFLLVPDPSDSDPALAALWDWLRRRMEQCPETLPDTVLGELVGSLLMRVQCSEAARAAVMPIALGITESFMRQRPSDHMATCVLRAWTQCISYSGDDGQRGGGPSGVGSSGGDGGCDGGRAEVLRSVYRVLDSHPPXXXXXXXLVAMATAAAHARQGSVTDLEGLGGVGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLQRPGSGVGLLKRRSSAASIHSMTLTGGMVAAGPPKVA---SYLRARAAYARLKRTALWFLGEHCLELTGSAL--------APSPLLQPASVXXXXXXLPLLAGGPFSNGAAAAPQXXXXXXXLSXESVHXXXXXXXXXXXXXXXXXXXXXXXLQQAALLEEYETRRVSVVALGKAAMALPEPSRFEIYAFLFGLVAS 2800
E Q + A+ SA+RR + L VL GC + +AARHAFA+L A P V++ + A+L+PT G PG +PNL DSLACVYYLR +K L F+E D RLD YRT+ +SV D RHRVALEAMQC++DHPRAW+L+V+AQ+ S D IF RVV RIK C+ +A + G G S +W LAHAACRVCR VG+TFQ A S++ + + + FSE S +P S L LPP P+ G + + ++ XXXXXXXXXXX R + A AIR LC+ALQ+H LLE HLHVRSLALEAMFLLVPDPS DP L LWDWL++R+EQCP TLPDTVL ELV +LL RVQCS +R V+PIAL +TESFM Q PS+ M CVLRAW QC Y G R VL+SVYR+LD + A A GSV D G ++ +S TGG A G P YLRA++A RLKR+A WFLGE+C +LTG+ P P + P+ + P G P + H L+ AA+ E+++TR AL K A+ LP+P RF+ Y FL GL S
Sbjct: 273 ESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEA-------LDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAASRPGSPTELPPAAPADLSNKKKKLXXXXXXXXXXAGNGPAGVGASEAYCNWALAHAACRVCRVVGRTFQVAISYQTMQNQNRAGVDGSSGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNAR---HGFSEGLLASGRDGSQPVTPEVGTGSAFNLLG------------LPPSPAPRSG--------ITRAPSAWGPTAGXXXXXXXXXXXXXXRRLARDGGRDGRAAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGR----------------------ARESVLQSVYRILDRSIALPPDNPRAAFASAANNRASTGSVGDR--------------------------------------------------GGAARHVRGMASEDWTRQPISTGG--AQGDPSETPRLKYLRAKSAATRLKRSAFWFLGEYCRQLTGAPAESSQNHDQTPPPAKTGGNELLDVWTSPVPS--PTKGGMGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMR-------LKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADS 1034
BLAST of mRNA_P-wetherbeei_contig188.1.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.270e-38 Identity = 200/587 (34.07%), Postives = 236/587 (40.20%), Query Frame = 2
Query: 557 DPIAVARGVRQHAVLIPTFAGAEG---FPGQPNLRDSLACVYYLRTLKVLVFSETRLEADPRADKASRLDFYRTIANSVRDERHRVALEA------------------------------------MQCIMDHPRAWDLVVDAQKTSNDMSIFPRVVARIKQCLHQAMEQMSGEGGSAWRRD------------------------------------------------------------------WPLAHAACRVCREVGKTFQRAHSHEMLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSNWQAFSFSERAHTSANPFDSGPSPAPPMDSFLASLSPQLQPQSXXQPPLPPVEQPQCGGPERRLQGVPQPDQLLDLSSSCSSXXXXXXXXXXXXXXXR------SVVEEENAKAIRGLCQALQRHGLLECSHLHVRSLALEAMFLLVPDPSDSDPALAALWDWLRRRMEQCPETLPDTVLG----------------ELVGSLLMRVQC-----------------------SEAARAAVMPIALGITESFMRQRPSDHMATCVL 1867
DP AVA GV + +L PT A G QPNL D LACVYYLR LK LVF+ P + SRLDFYRTIANSV D RHRVALEA MQC+MDH RAW L+VDAQ+ S D +F RVV +++CL A G +A WPLAHAACR R VG+T Q+A S E + XXXXXXXXXXXXXXXXXXXXXX G GS S R SG SP LSP LLDL S+ S XXXXXXXX E N AIR LC+A+ HG L+C H H AMFLLVPDPS DP L +W ++ +ME CP +LP+ LG LV SL+ R++ SEA+R A++P AL I ESF+RQ P+D + ++
Sbjct: 511 DPKAVAEGV--YPLLQPTTVAAAGALEIHNQPNLEDPLACVYYLRVLKTLVFA-------PELEAQSRLDFYRTIANSVSDTRHRVALEASDVFNLNFNPVPHTVAGATAVGSLTAQSWNYRGTAAMQCLMDHERAWTLLVDAQRESRDADLFRRVVDALRRCLAAAAGVDLLPGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAPHWPLAHAACRAARAVGQTLQKAISFETMAARAXXXXXXXXXXXXXXXXXXXXXXSEAVFF-----------GAGSPSGRLPVSPR---------SGGSP----------LSP-----------------------------------LLDLPSTPHSVAAXXXXXXXXSTYNSPHITTADAAEASNMAAIRDLCRAISGHGFLDCPHRH-------AMFLLVPDPSHRDPELQEMWAEVQMKMEACPASLPEASLGAPHGGVPASLSEASLVHLVTSLMARMEACXXXXXXXXXXXXXXXXXXXXXXSEASRGAIVPAALAIAESFVRQVPTDAVGRALV 1016 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig188.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig188.1.1 >prot_P-wetherbeei_contig188.1.1 ID=prot_P-wetherbeei_contig188.1.1|Name=mRNA_P-wetherbeei_contig188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1081bp MGGGTLARGGSGNGASGGTPGRPPRSGAGSSGIGSGSSIGGGSGILVGVGback to top mRNA from alignment at P-wetherbeei_contig188:1971..6606+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig188.1.1 ID=mRNA_P-wetherbeei_contig188.1.1|Name=mRNA_P-wetherbeei_contig188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4636bp|location=Sequence derived from alignment at P-wetherbeei_contig188:1971..6606+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig188:1971..6606+ >mRNA_P-wetherbeei_contig188.1.1 ID=mRNA_P-wetherbeei_contig188.1.1|Name=mRNA_P-wetherbeei_contig188.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3243bp|location=Sequence derived from alignment at P-wetherbeei_contig188:1971..6606+ (Phaeothamnion wetherbeei SAG_119_79)back to top |