mRNA_P-wetherbeei_contig1879.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1879.3.1
Unique NamemRNA_P-wetherbeei_contig1879.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1879.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1879contigP-wetherbeei_contig1879:5429..6398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDK2
Preferred nameAIFM1
PFAMsAIF-MLS,AIF_C,Pyr_redox_2
Model size970
Max annot lvl2759|Eukaryota
KEGG rclassRC00176
KEGG koko:K04727,ko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,ko04210,ko04214,ko04217,map00910,map01120,map04210,map04214,map04217
KEGG ModuleM00531
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000302,GO:0000737,GO:0001101,GO:0002931,GO:0003254,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004174,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006308,GO:0006309,GO:0006323,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006921,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009056,GO:0009057,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010257,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0015980,GO:0016020,GO:0016043,GO:0016174,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016651,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0019899,GO:0022008,GO:0022411,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030154,GO:0030162,GO:0030182,GO:0030261,GO:0030262,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032355,GO:0032368,GO:0032370,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032981,GO:0033108,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034655,GO:0034976,GO:0035556,GO:0035690,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043933,GO:0044070,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046677,GO:0046700,GO:0048037,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050660,GO:0050662,GO:0050664,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0051385,GO:0051402,GO:0051704,GO:0051707,GO:0051716,GO:0051881,GO:0051900,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070059,GO:0070301,GO:0070482,GO:0070887,GO:0070997,GO:0071103,GO:0071236,GO:0071241,GO:0071310,GO:0071383,GO:0071384,GO:0071389,GO:0071392,GO:0071396,GO:0071407,GO:0071453,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0071949,GO:0072521,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090649,GO:0090650,GO:0097035,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097305,GO:0097306,GO:0097366,GO:0098542,GO:0098588,GO:0098805,GO:0110096,GO:1900117,GO:1900119,GO:1900161,GO:1900163,GO:1901135,GO:1901214,GO:1901216,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902065,GO:1902170,GO:1902510,GO:1902882,GO:1903624,GO:1903729,GO:1903793,GO:1904044,GO:1904045,GO:1905780,GO:1905782,GO:1905952,GO:1905954,GO:2000116,GO:2001056,GO:2001138,GO:2001140
Exons1
Evalue4.97e-06
EggNOG OGsCOG0446@1|root,KOG1346@2759|Eukaryota
EC1.7.1.4
Descriptionapoptosis-inducing factor
Cds size456
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.392926-UTR-P-wetherbeei_contig1879:5428..59421683186155.392926-UTR-P-wetherbeei_contig1879:5428..5942Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1879 5429..5942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.4047213-CDS-P-wetherbeei_contig1879:5942..63981683186155.4047213-CDS-P-wetherbeei_contig1879:5942..6398Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1879 5943..6398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1879.3.1prot_P-wetherbeei_contig1879.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1879 5943..6398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1879.3.1

>prot_P-wetherbeei_contig1879.3.1 ID=prot_P-wetherbeei_contig1879.3.1|Name=mRNA_P-wetherbeei_contig1879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MTSLSCSLVEDYIPLANLNVFPSKSHPFSLFRRQMRYPSVLWPAQCKQVP
VHVRRPLRPTASAAASREIAAPLDATYPYLIIGFGVAAQAALGALLEADP
QARVLVVDADPAARGPDAAALPGGARVDFRAGVRVRRLDAPAGIAVLVGK
VG
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mRNA from alignment at P-wetherbeei_contig1879:5429..6398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1879.3.1 ID=mRNA_P-wetherbeei_contig1879.3.1|Name=mRNA_P-wetherbeei_contig1879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=970bp|location=Sequence derived from alignment at P-wetherbeei_contig1879:5429..6398+ (Phaeothamnion wetherbeei SAG_119_79)
CATCTGGGTCGCGATGCAAACTGGAGAAATTTGGAGCTGAGGAGGAAGCC
CCTGTCGTTATCACGGTGGGGTCAAACGGGCGAAAAGTGAGTTTGCGTTC
CTTCGCGCTTCAGTCTATTGCGTGTCTCTCTCCTGGCATGAAAAATGACT
TGTCGTGTTCAGTTACTCTTGCGCGAATTTTTCTATGTTCTGAGGCAGCG
GGAGAAGGCGAAAATTGTGGTTTTCCATCGGAAGTCCTTTTCCGAGACAT
TCGAGCATTTACACGAGGCTGGAAGATTGGTTGTCTTTTTTCAAACCCAC
TAACTCGTTCTTTTTGACGTTTGCATTTCAATTTCTGGTCAGCAAGCATG
ACAAAAAGCAACCGCTTTTCGAGCTTCATTTGCAAAAGAAGAAGCGGCCG
TTCTCCATCATCATCCTGGCAGATGGACGCTTCGTGGCGGCGCGGAAACT
TCCTTTGGTCATCACTGTCCGAAGCTCACCTTCCGCAATCGCTTTTCGCT
GCCCAATTCCAAGCATGACTTCTCTCAGTTGTTCTCTGGTCGAGGACTAC
ATCCCCCTTGCTAATCTGAACGTCTTCCCATCAAAATCTCATCCTTTTTC
CCTCTTTCGTCGGCAAATGCGTTACCCTTCTGTCCTCTGGCCGGCGCAAT
GCAAACAGGTTCCAGTCCACGTCCGGCGGCCGCTTCGCCCCACCGCCTCC
GCTGCCGCCTCCCGCGAAATCGCCGCTCCCCTCGACGCCACGTACCCCTA
TTTGATCATCGGATTCGGCGTCGCGGCACAGGCGGCTCTCGGGGCGCTCC
TGGAGGCCGACCCGCAAGCGCGCGTTTTGGTCGTTGACGCTGATCCTGCC
GCGCGCGGCCCCGACGCGGCGGCCCTGCCGGGCGGCGCCCGCGTCGACTT
TCGGGCAGGCGTGCGGGTGCGACGGCTCGACGCCCCGGCCGGCATTGCCG
TGCTCGTGGGAAAAGTGGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1879:5429..6398+

>mRNA_P-wetherbeei_contig1879.3.1 ID=mRNA_P-wetherbeei_contig1879.3.1|Name=mRNA_P-wetherbeei_contig1879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig1879:5429..6398+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTCTCTCAGTTGTTCTCTGGTCGAGGACTACATCCCCCTTGCTAA
TCTGAACGTCTTCCCATCAAAATCTCATCCTTTTTCCCTCTTTCGTCGGC
AAATGCGTTACCCTTCTGTCCTCTGGCCGGCGCAATGCAAACAGGTTCCA
GTCCACGTCCGGCGGCCGCTTCGCCCCACCGCCTCCGCTGCCGCCTCCCG
CGAAATCGCCGCTCCCCTCGACGCCACGTACCCCTATTTGATCATCGGAT
TCGGCGTCGCGGCACAGGCGGCTCTCGGGGCGCTCCTGGAGGCCGACCCG
CAAGCGCGCGTTTTGGTCGTTGACGCTGATCCTGCCGCGCGCGGCCCCGA
CGCGGCGGCCCTGCCGGGCGGCGCCCGCGTCGACTTTCGGGCAGGCGTGC
GGGTGCGACGGCTCGACGCCCCGGCCGGCATTGCCGTGCTCGTGGGAAAA
GTGGGA
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