mRNA_P-wetherbeei_contig18779.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18779.1.1
Unique NamemRNA_P-wetherbeei_contig18779.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18779.1.1 vs. uniprot
Match: A0A6H5KHJ3_9PHAE (V-type proton ATPase subunit G n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.270e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    4 ISNAYRAEKEASYQASMQKTLGSSGMDAQVLEKQTAEAITAMRADFEKNKGTVLNLLVHEVCNVQTIVPEGLK 222
            + NA+RAEKEA+YQASMQK++GS+G +   L  QT  AI +M  D+ KNK  V +LLVHEVC++   VPEGLK
Sbjct:   40 LCNAFRAEKEAAYQASMQKSMGSTGKEGDTLGAQTEAAIQSMTDDYSKNKKVVGDLLVHEVCHIVYSVPEGLK 112
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BLAST of mRNA_P-wetherbeei_contig18779.1.1 vs. uniprot
Match: D7FJS2_ECTSI (V-type proton ATPase subunit G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.480e-17
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    4 ISNAYRAEKEASYQASMQKTLGSSGMDAQVLEKQTAEAITAMRADFEKNKGTVLNLLVHEVCNVQTIVPEGLK 222
            + NA+RAEKEA+YQASMQK++GS+G +   L  QT  AI +M  D+ KNK  V +LLVHEVC++   VPEGLK
Sbjct:   76 LCNAFRAEKEAAYQASMQKSMGSTGKEGDTLGAQTDAAIQSMTDDYSKNKEVVGDLLVHEVCHIVYSVPEGLK 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18779.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHJ3_9PHAE4.270e-1857.53V-type proton ATPase subunit G n=1 Tax=Ectocarpus ... [more]
D7FJS2_ECTSI1.480e-1757.53V-type proton ATPase subunit G n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18779contigP-wetherbeei_contig18779:540..1328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJS2
Preferred nameATP6V1G1
PFAMsV-ATPase_G
Model size240
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K01046,ko:K02152,ko:K14388
KEGG TC2.A.21.5.3,2.A.21.5.4,2.A.21.5.5,3.A.2.2
KEGG ReactionR02250,R02687
KEGG Pathwayko00190,ko00561,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map00561,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00098,M00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0001700,GO:0001763,GO:0002009,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007424,GO:0007430,GO:0008021,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008286,GO:0008324,GO:0008553,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009888,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019829,GO:0019899,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030133,GO:0030285,GO:0030554,GO:0030641,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031164,GO:0031224,GO:0031300,GO:0031301,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0034641,GO:0034654,GO:0035239,GO:0035295,GO:0035639,GO:0036094,GO:0036295,GO:0036296,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045202,GO:0045851,GO:0046034,GO:0046390,GO:0046483,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051117,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055065,GO:0055067,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0055086,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0070382,GO:0070482,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071453,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072512,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0097159,GO:0097367,GO:0097458,GO:0097708,GO:0098563,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:0099501,GO:0099503,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Exons2
Evalue2.43e-18
EggNOG OGsKOG1772@1|root,KOG1772@2759|Eukaryota
Ec32 ortholog descriptionVacuolar (H )-ATPase G subunit
Ec32 orthologEc-06_010400.1
EC3.1.1.3
Descriptionproton transmembrane transport
Cds size240
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.1898208-CDS-P-wetherbeei_contig18779:539..7191683186155.1898208-CDS-P-wetherbeei_contig18779:539..719Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18779 540..719 -
1683186155.1994307-CDS-P-wetherbeei_contig18779:1268..13281683186155.1994307-CDS-P-wetherbeei_contig18779:1268..1328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18779 1269..1328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18779.1.1prot_P-wetherbeei_contig18779.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18779 540..1328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18779.1.1

>prot_P-wetherbeei_contig18779.1.1 ID=prot_P-wetherbeei_contig18779.1.1|Name=mRNA_P-wetherbeei_contig18779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
SISNAYRAEKEASYQASMQKTLGSSGMDAQVLEKQTAEAITAMRADFEKN
KGTVLNLLVHEVCNVQTIVPEGLKRNVAK*
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mRNA from alignment at P-wetherbeei_contig18779:540..1328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18779.1.1 ID=mRNA_P-wetherbeei_contig18779.1.1|Name=mRNA_P-wetherbeei_contig18779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig18779:540..1328- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCAGCAACGCTTACCGCGCGGAGAAGGAGGCTTCCTATCAAGCCAG
CATGCAAAAGGTGAGGACTCTGCGCCATGCGCTTTATTGCCGCATTATAG
CGGCAGCTGTTTGTACAATTTTTCTGTGTCTTGCCGTGGCTGCCGTTCTT
TTTGGTTCCTGCATGTACTGGAGAAGAGATCGGATGCCAAAACAGGCCAG
AAGCCAACAATGGCACCTTTCGAGATAGGCAGCGAGGGCAAAAAAATCAG
CGCGGACATTGTTTCGCGCCGCATTAATCTCTTCTGTAGAGGCCTTCTCA
GATGGCCTCGTCTGAATCGCCATTCATCTCTTACAAGTGTTGCCAGAGTT
CGCACCGGCTCCTGTAAAAAGAACGGCGTTGTGGATCTGCTGCGCAGCTC
AGATGATGCTCTGGTGTCGGAATTTATTCTTTGTTTGCTTTCGTTGCCGT
CCCTTCATACAGCATTAGGGAAACGAAGCCGTGTCATCCTTTTCCTTCGC
ATTTCCCCTTTTTAGTTACTGTCTGTACTTTCTCGGGCCGTAAACAAAAT
CCCTTTTATACGCCCCACTTCGGCCTTCCCCTTACTTTCCTCCTTTCCAC
ACGGCACAGACGCTGGGCTCGTCCGGGATGGACGCGCAGGTGCTGGAGAA
GCAGACGGCGGAGGCGATAACGGCGATGCGGGCGGATTTCGAGAAGAACA
AAGGCACCGTCCTCAACCTTCTTGTACACGAGGTCTGCAACGTCCAGACC
ATCGTGCCTGAAGGGCTCAAGCGCAACGTCGCCAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18779:540..1328-

>mRNA_P-wetherbeei_contig18779.1.1 ID=mRNA_P-wetherbeei_contig18779.1.1|Name=mRNA_P-wetherbeei_contig18779.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig18779:540..1328- (Phaeothamnion wetherbeei SAG_119_79)
AGCATCAGCAACGCTTACCGCGCGGAGAAGGAGGCTTCCTATCAAGCCAG
CATGCAAAAGACGCTGGGCTCGTCCGGGATGGACGCGCAGGTGCTGGAGA
AGCAGACGGCGGAGGCGATAACGGCGATGCGGGCGGATTTCGAGAAGAAC
AAAGGCACCGTCCTCAACCTTCTTGTACACGAGGTCTGCAACGTCCAGAC
CATCGTGCCTGAAGGGCTCAAGCGCAACGTCGCCAAGTAA
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