mRNA_P-wetherbeei_contig18770.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18770.1.1
Unique NamemRNA_P-wetherbeei_contig18770.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18770.1.1 vs. uniprot
Match: D7FL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL55_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.040e-12
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   25 ALVRKNLLLKRVERWQTLLEIAIPVGFMLLLRWIKSVSTVIDQPNVAYACGQAFPWYYE 201
            A+++KN LLK  +  QTL E+ IP  FMLLL WIKS++TV D P   Y CGQ  PW YE
Sbjct:   19 AILKKNALLKMADWRQTLAEVTIPALFMLLLVWIKSLTTVYDSPATNYTCGQTIPWQYE 77
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BLAST of mRNA_P-wetherbeei_contig18770.1.1 vs. uniprot
Match: A0A6H5J6A2_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6A2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.650e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   25 ALVRKNLLLKRVERWQTLLEIAIPVGFMLLLRWIKSVSTVIDQPNVAYACGQAFPWYYE 201
            A+++KN LLK  +  QT+ E+ IP  FMLLL WIKS++TV D P   Y CGQ  PW YE
Sbjct:   19 AILKKNALLKMADWRQTVAEVTIPALFMLLLVWIKSLTTVYDSPATNYTCGQTIPWQYE 77
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BLAST of mRNA_P-wetherbeei_contig18770.1.1 vs. uniprot
Match: A0A4D9D786_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D786_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.220e-8
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   16 QYLALVRKNLLLKRVERWQTLLEIAIPVGFMLLLRWIKSVSTVIDQPNVAYACGQ 180
            Q  A++ KN+LLKR     T  E+AIPV F+ LL WIK++ T  D PNVAYACGQ
Sbjct:    7 QLRAILWKNILLKRRHWISTFCEVAIPVFFIGLLVWIKTICTKRDAPNVAYACGQ 61
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BLAST of mRNA_P-wetherbeei_contig18770.1.1 vs. uniprot
Match: A0A482SZK2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZK2_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 1.090e-7
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   76 LLEIAIPVGFMLLLRWIKSVSTVIDQPNVAYACGQAFPWYY 198
            L E+ +PV FM LL  IKS+++V D PNVAY CG  +PW Y
Sbjct:   26 LAELFLPVAFMALLILIKSITSVYDSPNVAYYCGNTYPWSY 66
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BLAST of mRNA_P-wetherbeei_contig18770.1.1 vs. uniprot
Match: A0A7S1UJX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJX6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.250e-6
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   67 WQT-LLEIAIPVGFMLLLRWIKSVSTVIDQPNVAYACGQAFPWY 195
            WQ+ LLE+A+PVGFML+L  IK+++   D PNV Y+CGQ    Y
Sbjct:    1 WQSSLLEVALPVGFMLILVLIKTLTDKYDAPNVDYSCGQTLDQY 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FL55_ECTSI1.040e-1255.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6A2_9PHAE2.650e-1254.24ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A4D9D786_9STRA1.220e-856.36Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A482SZK2_9ARCH1.090e-756.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1UJX6_9STRA6.250e-654.55Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18770contigP-wetherbeei_contig18770:151..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL55
PFAMsABC2_membrane_3,ABC_tran
Model size204
Max annot lvl2759|Eukaryota
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
Exons1
Evalue1.71e-13
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size204
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186155.1321762-CDS-P-wetherbeei_contig18770:150..3541683186155.1321762-CDS-P-wetherbeei_contig18770:150..354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18770 151..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18770.1.1prot_P-wetherbeei_contig18770.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18770 151..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18770.1.1

>prot_P-wetherbeei_contig18770.1.1 ID=prot_P-wetherbeei_contig18770.1.1|Name=mRNA_P-wetherbeei_contig18770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MGALVQYLALVRKNLLLKRVERWQTLLEIAIPVGFMLLLRWIKSVSTVID
QPNVAYACGQAFPWYYEV
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mRNA from alignment at P-wetherbeei_contig18770:151..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18770.1.1 ID=mRNA_P-wetherbeei_contig18770.1.1|Name=mRNA_P-wetherbeei_contig18770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig18770:151..354- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCCTTGGTGCAGTATCTGGCGCTCGTCCGAAAGAATCTGTTGCT
GAAGAGAGTGGAGCGATGGCAGACGCTGCTGGAAATCGCTATTCCTGTTG
GCTTTATGCTACTTCTCAGATGGATCAAATCGGTTAGCACTGTCATCGAC
CAACCCAACGTGGCATACGCCTGCGGCCAGGCCTTTCCGTGGTACTATGA
GGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18770:151..354-

>mRNA_P-wetherbeei_contig18770.1.1 ID=mRNA_P-wetherbeei_contig18770.1.1|Name=mRNA_P-wetherbeei_contig18770.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig18770:151..354- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGCCTTGGTGCAGTATCTGGCGCTCGTCCGAAAGAATCTGTTGCT
GAAGAGAGTGGAGCGATGGCAGACGCTGCTGGAAATCGCTATTCCTGTTG
GCTTTATGCTACTTCTCAGATGGATCAAATCGGTTAGCACTGTCATCGAC
CAACCCAACGTGGCATACGCCTGCGGCCAGGCCTTTCCGTGGTACTATGA
GGTG
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