mRNA_P-wetherbeei_contig18756.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18756.3.1
Unique NamemRNA_P-wetherbeei_contig18756.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18756.3.1 vs. uniprot
Match: A0A1H9VT62_9BACI (Gamma-glutamylcyclotransferase family protein n=2 Tax=Salipaludibacillus TaxID=1884449 RepID=A0A1H9VT62_9BACI)

HSP 1 Score: 49.7 bits (117), Expect = 3.050e-5
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   19 LFVYGSLKRDEYNWHILRDGVIAHEPARLQGSMYLRGDGYPALLL 153
            +FVYG+L++ E N ++L+D    ++ AR++GS+Y  G GYPA LL
Sbjct:    8 VFVYGTLRQGESNHYLLKDSRRVYQQARIRGSLYDTGKGYPAFLL 52
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BLAST of mRNA_P-wetherbeei_contig18756.3.1 vs. uniprot
Match: A0A4P6PCM4_9BACT (Gamma-glutamylcyclotransferase n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PCM4_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 5.300e-5
Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:    1 SSMNLRLFVYGSLKRDEYNWHILRDGVIAHEPARLQGSMYLRGDGYPALLLPVGLPL--GTTDYARD 195
            ++  LRLFVYG+LKR  +N        ++ EPA   G +Y    G+PAL +P G  L  GTTD   D
Sbjct:    3 TNQQLRLFVYGTLKRGYWNHDRFCSQAVSIEPATTWGRLYHLPAGFPALKIPDGCILAHGTTDPLAD 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18756.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1H9VT62_9BACI3.050e-546.67Gamma-glutamylcyclotransferase family protein n=2 ... [more]
A0A4P6PCM4_9BACT5.300e-541.79Gamma-glutamylcyclotransferase n=1 Tax=Verrucomicr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18756contigP-wetherbeei_contig18756:1117..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121448.DGI_2773
PFAMsGGACT
Model size210
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.23e-07
EggNOG OGsCOG2105@1|root,COG2105@2|Bacteria,1R92V@1224|Proteobacteria,42QI0@68525|delta/epsilon subdivisions,2WKGE@28221|Deltaproteobacteria,2MAXV@213115|Desulfovibrionales
DescriptionGamma-glutamyl cyclotransferase, AIG2-like
Cds size204
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.755514-UTR-P-wetherbeei_contig18756:1116..11221683186154.755514-UTR-P-wetherbeei_contig18756:1116..1122Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18756 1117..1122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.7646692-CDS-P-wetherbeei_contig18756:1122..13261683186154.7646692-CDS-P-wetherbeei_contig18756:1122..1326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18756 1123..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18756.3.1prot_P-wetherbeei_contig18756.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18756 1123..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18756.3.1

>prot_P-wetherbeei_contig18756.3.1 ID=prot_P-wetherbeei_contig18756.3.1|Name=mRNA_P-wetherbeei_contig18756.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MNLRLFVYGSLKRDEYNWHILRDGVIAHEPARLQGSMYLRGDGYPALLLP
VGLPLGTTDYARDLGGAW
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mRNA from alignment at P-wetherbeei_contig18756:1117..1326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18756.3.1 ID=mRNA_P-wetherbeei_contig18756.3.1|Name=mRNA_P-wetherbeei_contig18756.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig18756:1117..1326+ (Phaeothamnion wetherbeei SAG_119_79)
TCCTCGATGAATCTTCGACTCTTCGTCTACGGGTCGCTGAAGCGCGACGA
ATATAACTGGCACATCCTCCGCGACGGAGTGATCGCCCACGAGCCTGCCC
GCCTGCAGGGCTCGATGTATCTGCGGGGCGACGGATATCCCGCTCTCTTG
TTGCCGGTAGGTCTTCCCCTGGGGACCACCGACTACGCCCGCGATCTGGG
AGGGGCCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18756:1117..1326+

>mRNA_P-wetherbeei_contig18756.3.1 ID=mRNA_P-wetherbeei_contig18756.3.1|Name=mRNA_P-wetherbeei_contig18756.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig18756:1117..1326+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCTTCGACTCTTCGTCTACGGGTCGCTGAAGCGCGACGAATATAA
CTGGCACATCCTCCGCGACGGAGTGATCGCCCACGAGCCTGCCCGCCTGC
AGGGCTCGATGTATCTGCGGGGCGACGGATATCCCGCTCTCTTGTTGCCG
GTAGGTCTTCCCCTGGGGACCACCGACTACGCCCGCGATCTGGGAGGGGC
CTGG
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