mRNA_P-wetherbeei_contig18753.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18753.2.1
Unique NamemRNA_P-wetherbeei_contig18753.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18753.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18753contigP-wetherbeei_contig18753:236..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog82508.K1VA87
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size641
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000226
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VGMM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size639
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.6438854-CDS-P-wetherbeei_contig18753:235..8741683186154.6438854-CDS-P-wetherbeei_contig18753:235..874Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18753 236..874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18753.2.1prot_P-wetherbeei_contig18753.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18753 236..874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18753.2.1

>prot_P-wetherbeei_contig18753.2.1 ID=prot_P-wetherbeei_contig18753.2.1|Name=mRNA_P-wetherbeei_contig18753.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
RLPPQLSQAQAVQERHTSFAALPPGTGPPRVNVVSAANVFYAAATTKAAP
STRPAAAFQVAAPHDINASVPQREFIVDSGAARTFVSDLSILQRVKQISR
PVVAAGGEEYTATHSGVLHGIVEEADSGRPLEFSILDAEYVPGFKINLLS
VRHLHKQGIIALFNGPNSVLFDARGVKLRLLDDDSGIYKLKFVCMVRLPT
DWEYPPERFYCLS
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mRNA from alignment at P-wetherbeei_contig18753:236..876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18753.2.1 ID=mRNA_P-wetherbeei_contig18753.2.1|Name=mRNA_P-wetherbeei_contig18753.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=641bp|location=Sequence derived from alignment at P-wetherbeei_contig18753:236..876+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGCCACCGCAGCTTTCACAAGCGCAGGCCGTGCAGGAACGGCACAC
CAGCTTTGCTGCTCTCCCGCCGGGCACCGGCCCGCCACGCGTCAACGTCG
TCAGCGCGGCCAACGTCTTCTACGCAGCAGCAACGACAAAGGCGGCGCCT
TCGACGCGGCCAGCGGCGGCGTTTCAGGTCGCCGCGCCTCATGACATCAA
CGCATCTGTACCACAGCGGGAGTTCATTGTCGACAGCGGAGCTGCGCGGA
CCTTCGTGTCCGACCTGTCGATTCTGCAACGCGTCAAGCAGATCTCGCGC
CCGGTAGTGGCTGCCGGCGGCGAGGAGTACACCGCTACGCACAGCGGCGT
TCTGCATGGCATCGTGGAAGAAGCTGATTCCGGCCGGCCGCTGGAGTTTA
GCATCCTCGATGCTGAGTACGTGCCGGGCTTCAAGATCAACCTCCTGTCC
GTCCGCCACCTGCACAAGCAGGGCATCATCGCGCTCTTCAACGGACCGAA
CAGTGTGCTGTTCGATGCCCGTGGCGTCAAGCTGCGGCTGCTCGACGACG
ACAGCGGCATCTACAAGCTCAAATTCGTCTGCATGGTCCGGCTTCCTACT
GACTGGGAGTACCCGCCCGAGAGGTTTTACTGCCTTTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18753:236..876+

>mRNA_P-wetherbeei_contig18753.2.1 ID=mRNA_P-wetherbeei_contig18753.2.1|Name=mRNA_P-wetherbeei_contig18753.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig18753:236..876+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGCCACCGCAGCTTTCACAAGCGCAGGCCGTGCAGGAACGGCACAC
CAGCTTTGCTGCTCTCCCGCCGGGCACCGGCCCGCCACGCGTCAACGTCG
TCAGCGCGGCCAACGTCTTCTACGCAGCAGCAACGACAAAGGCGGCGCCT
TCGACGCGGCCAGCGGCGGCGTTTCAGGTCGCCGCGCCTCATGACATCAA
CGCATCTGTACCACAGCGGGAGTTCATTGTCGACAGCGGAGCTGCGCGGA
CCTTCGTGTCCGACCTGTCGATTCTGCAACGCGTCAAGCAGATCTCGCGC
CCGGTAGTGGCTGCCGGCGGCGAGGAGTACACCGCTACGCACAGCGGCGT
TCTGCATGGCATCGTGGAAGAAGCTGATTCCGGCCGGCCGCTGGAGTTTA
GCATCCTCGATGCTGAGTACGTGCCGGGCTTCAAGATCAACCTCCTGTCC
GTCCGCCACCTGCACAAGCAGGGCATCATCGCGCTCTTCAACGGACCGAA
CAGTGTGCTGTTCGATGCCCGTGGCGTCAAGCTGCGGCTGCTCGACGACG
ACAGCGGCATCTACAAGCTCAAATTCGTCTGCATGGTCCGGCTTCCTACT
GACTGGGAGTACCCGCCCGAGAGGTTTTACTGCCTTTCG
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