mRNA_P-wetherbeei_contig18750.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18750.1.1
Unique NamemRNA_P-wetherbeei_contig18750.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: A0A835Z2D9_9STRA (ATP synthase regulation protein NCA2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.100e-21
Identity = 54/108 (50.00%), Postives = 82/108 (75.93%), Query Frame = 1
Query:   37 QAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTVASRRLAPTALVHQAMRTSVRDMERLLTASRGFAGQQAP 360
            +A++ I++G ++R+++IQ   +K + L +M+AIDDLY+ANQ+NLQLLA +PA++VVA  +F+ RNVF  + SRRL PTA+VH  MR ++R++ER LT S  F+ Q  P
Sbjct:  908 RALRGIIAGPLLRVLLIQIAHLKLQGLSAMEAIDDLYNANQLNLQLLASLPALIVVAGTYFVARNVFFAIMSRRLEPTAIVHAGMRGALREVERALTNSSAFSRQAQP 1015          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: D7G625_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G625_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.430e-20
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   40 AVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNV---FVTVAS-RRLAPTALVHQAMRTSVRDMERLLTASRGFAGQQAP 360
            +++  ++G+I RM+ IQ  F+KKELL SMQAID+L+ ANQV L+L++V+PA    A+L F +  V   FV  AS RRL PT  VH++MR S+R++ERLLT+SRGF G   P
Sbjct: 1957 SIRGTVNGRIPRMLFIQATFLKKELLHSMQAIDELFQANQVTLRLISVIPA----ALLLFAVAKVSGPFVHAASSRRLEPTTAVHRSMRASLREIERLLTSSRGFVGSHEP 2063          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: W7TDI7_9STRA (Nuclear control of ATP synthase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDI7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.550e-20
Identity = 52/97 (53.61%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   34 QQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTVASRRLAPTALVHQAMRTSVRDMERLL 324
            + AV+N+ SGKIVRM++IQ Q++KKELLV+M+AIDDLY+AN+VNLQ  AVVPA+L+    + +   +F  +ASRR++  + VH ++R ++RD+ERLL
Sbjct:  913 RHAVRNVFSGKIVRMLLIQMQYVKKELLVAMEAIDDLYNANKVNLQAFAVVPALLLTYCAYRMSLYLFGALASRRISNISGVHASLRRTLRDLERLL 1009          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: A0A5D6XN54_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN54_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.520e-16
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 SVASTRCPLLCQQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTVASRR----LAPTALVHQAMRTSVRDMERLLTASRGFAGQQ 354
            SV S +       A+KN++SG IVRM++IQ QFIKKEL+V+M AID+L HANQ+NLQL+A VP  LV   L+  LR++F +V  R         + V   +R ++RD+ERLL       G Q
Sbjct:  411 SVVSLQYEKQLSSALKNLMSGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNLQLMATVPTFLVFGGLYAALRSLFASVYRRTSEQLFTDPSDVAGFLRANLRDIERLLNKQNRGGGTQ 532          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: K3WDK6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDK6_GLOUD)

HSP 1 Score: 80.9 bits (198), Expect = 2.270e-15
Identity = 54/123 (43.90%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 SVASTRCPLLCQQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTV----ASRRLAPTALVHQAMRTSVRDMERLLTA-SRGFAGQQ 354
            SV S +       AV+N++SG IVRM++IQ QFIKKEL+V+M AID+L HANQ+NLQ++A VP  +V   ++ L +NVF  +    + R     + +   +R ++RD+ERLL   +R   GQQ
Sbjct:  407 SVVSLQYEKQLSSAVRNLMSGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNLQIMATVPTFIVFGGVYTLAKNVFAYIYKRTSERLFYDPSEIAGFLRNNLRDIERLLNKQNRSPNGQQ 529          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: A0A3F2RRH9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRH9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.080e-14
Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 SVASTRCPLLCQQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTV----ASRRLAPTALVHQAMRTSVRDMERLLTA-SRGFAGQQA 357
            SV S +       AV+N+++G IVRM++IQ QFIKKEL+V+M AID+L HANQ+N+Q+LA +P  LV   L+ L+ + F  +    + R    +  +   +R ++RD+ERLL   +RG A   A
Sbjct:  410 SVVSLQYEKQLASAVRNLMTGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNMQILATIPTFLVFGGLYKLVTSTFHMIYKRMSDRLFYDSTEIAGFLRNNLRDIERLLNKQNRGSASDDA 533          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: M4BLQ4_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BLQ4_HYAAE)

HSP 1 Score: 76.3 bits (186), Expect = 9.430e-14
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   40 AVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTV----ASRRLAPTALVHQAMRTSVRDMERLL 324
            AV+N+++G IVRM++IQ QFIKKEL+V+M AID+L HANQ+NLQ+LA +P  LV   L+ L+ + F  +    + R    +  + + +R ++RD+ERLL
Sbjct:  408 AVRNLITGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNLQILATIPTFLVFGGLYKLVTSTFHMIYKRMSDRLYYDSTEIARFLRNNLRDIERLL 506          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: G4ZBF5_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZBF5_PHYSP)

HSP 1 Score: 76.3 bits (186), Expect = 9.460e-14
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 SVASTRCPLLCQQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTV----ASRRLAPTALVHQAMRTSVRDMERLLTASRGFAG 348
            SV S +       AV+N+++G IVRM++IQ QFIKKEL+V+M AID+L HANQ+NLQ+LA +P  LV   L+ L+ + F  +    + R    ++ +   +R ++RD+ERLL      +G
Sbjct:  412 SVVSLQYEKQLASAVRNLMTGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNLQILATIPTFLVFGGLYKLVTSAFHMIYKRMSDRLYYDSSEIAGFLRNNLRDIERLLNKQNRGSG 531          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: D0NFE7_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NFE7_PHYIT)

HSP 1 Score: 75.9 bits (185), Expect = 1.290e-13
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SVASTRCPLLCQQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTV----ASRRLAPTALVHQAMRTSVRDMERLLTASRGFAG 348
            SV S +       AVKN+++G IVRM++IQ QFIKKEL+V+M AID+L HANQ+N+Q++A VP  LV   L+ L+ + F  V    + R    +  +   +R ++RD+ERLL      +G
Sbjct:  411 SVVSLQYEKQLASAVKNLMTGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNMQMMATVPTFLVFGGLYKLVTSAFHMVYKRMSDRLFYDSHEIAGFLRNNLRDIERLLNKQNRGSG 530          
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Match: A0A2P4YKW8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YKW8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.760e-13
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   40 AVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYHANQVNLQLLAVVPAVLVVAILHFLLRNVFVTV----ASRRLAPTALVHQAMRTSVRDMERLL 324
            AVKN+++G IVRM++IQ QFIKKEL+V+M AID+L HANQ+N+Q++A VP  LV   L+ L+ + F  +    + R    +  +   +R ++RD+ERLL
Sbjct:  421 AVKNLMTGDIVRMLLIQVQFIKKELMVAMGAIDELMHANQLNMQIMATVPTFLVFGGLYKLVTSAFHMIYKRMSDRLFYDSTEIAGFLRNNLRDIERLL 519          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18750.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2D9_9STRA1.100e-2150.00ATP synthase regulation protein NCA2-domain-contai... [more]
D7G625_ECTSI3.430e-2052.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TDI7_9STRA4.550e-2053.61Nuclear control of ATP synthase 2 n=2 Tax=Monodops... [more]
A0A5D6XN54_9STRA3.520e-1645.90Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WDK6_GLOUD2.270e-1543.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3F2RRH9_9STRA5.080e-1441.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
M4BLQ4_HYAAE9.430e-1446.46Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
G4ZBF5_PHYSP9.460e-1441.67Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
D0NFE7_PHYIT1.290e-1342.50Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A2P4YKW8_9STRA1.760e-1346.46Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18750contigP-wetherbeei_contig18750:258..981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G625
PFAMsNCA2
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K18158
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons2
Evalue5.62e-21
EggNOG OGs28M9W@1|root,2QQIS@2759|Eukaryota
DescriptionNuclear control of ATPase protein
Cds size360
COG categoryS
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186154.5729241-CDS-P-wetherbeei_contig18750:257..4161683186154.5729241-CDS-P-wetherbeei_contig18750:257..416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18750 258..416 +
1683186154.584726-CDS-P-wetherbeei_contig18750:780..9811683186154.584726-CDS-P-wetherbeei_contig18750:780..981Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18750 781..981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18750.1.1prot_P-wetherbeei_contig18750.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18750 258..981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18750.1.1

>prot_P-wetherbeei_contig18750.1.1 ID=prot_P-wetherbeei_contig18750.1.1|Name=mRNA_P-wetherbeei_contig18750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
SVASTRCPLLCQQAVKNILSGKIVRMVIIQTQFIKKELLVSMQAIDDLYH
ANQVNLQLLAVVPAVLVVAILHFLLRNVFVTVASRRLAPTALVHQAMRTS
VRDMERLLTASRGFAGQQAP
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mRNA from alignment at P-wetherbeei_contig18750:258..981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18750.1.1 ID=mRNA_P-wetherbeei_contig18750.1.1|Name=mRNA_P-wetherbeei_contig18750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=724bp|location=Sequence derived from alignment at P-wetherbeei_contig18750:258..981+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGTTGCGTCCACCCGCTGTCCATTGCTCTGCCAGCAGGCGGTCAAGAA CATTCTGAGCGGCAAGATCGTCCGGATGGTCATCATCCAGACGCAGTTCA TCAAGAAGGAGCTGCTCGTTTCGATGCAGGCCATTGACGACCTCTACCAC GCCAACCAGGTAGGCCTATTGCTTTTCCCTCTGGCCACCATCACTTTCCC TTTTCAGTGCGACATTCGTCTCGATCGCTCGTTTTGTCTCGGCCGTGTTG GTGGCGTTATAACTTCTGCGTCTGTTGTATGGCTTAAAGGTCAGACAGCT AGTGGCGGGGAAGCACATGTCTGCAGAAGCTGTAGACTTACCGAAGCATG ACATGAAAGCGTTTTCATTCCTTTCGTTGCATGGGGGCCTGCTAGCTTCA GGGCTCTGTGTGTCGATGGGACCATTGCCTAGCTTTTGAGAACTGACCCG CTGTCTTCACATATACTGCTTCCTTCATTTTCTCTGTCCTTGGGTACCGT CTGCCACCTGCATTCCGCTCCAGGTCAATCTGCAGCTGCTGGCGGTGGTG CCGGCCGTCCTGGTCGTGGCCATCCTCCACTTCCTGCTCCGGAACGTGTT TGTCACGGTCGCATCACGGCGCCTGGCGCCGACCGCCCTCGTCCACCAGG CAATGCGCACCTCGGTGCGCGACATGGAGCGGCTGCTGACGGCCTCGCGG GGCTTTGCTGGCCAGCAGGCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18750:258..981+

>mRNA_P-wetherbeei_contig18750.1.1 ID=mRNA_P-wetherbeei_contig18750.1.1|Name=mRNA_P-wetherbeei_contig18750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig18750:258..981+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGTTGCGTCCACCCGCTGTCCATTGCTCTGCCAGCAGGCGGTCAAGAA
CATTCTGAGCGGCAAGATCGTCCGGATGGTCATCATCCAGACGCAGTTCA
TCAAGAAGGAGCTGCTCGTTTCGATGCAGGCCATTGACGACCTCTACCAC
GCCAACCAGGTCAATCTGCAGCTGCTGGCGGTGGTGCCGGCCGTCCTGGT
CGTGGCCATCCTCCACTTCCTGCTCCGGAACGTGTTTGTCACGGTCGCAT
CACGGCGCCTGGCGCCGACCGCCCTCGTCCACCAGGCAATGCGCACCTCG
GTGCGCGACATGGAGCGGCTGCTGACGGCCTCGCGGGGCTTTGCTGGCCA
GCAGGCGCCG
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